4B9KE

Pvhl-elob-eloc complex_(2s,4r)-1-(3-amino-2-methylbenzoyl)-4-hydroxy-n-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide bound
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
95
structure length
86
Chain Sequence
MYVKLISSDGHEFIVKREHALTSGTIKAMLSTNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (18-22)TI1 (23-26)EMPTYS2 (28-32)AH1 (33-37)AH2 (40-45)AH3 (67-83)TIV1 (46-58)TII1 (83-86)S3 (59-61)Updating...
connected with : NaN
molecule tags Ligase
source organism Homo sapiens
publication title Small-Molecule Inhibitors of the Interaction between the E3 Ligase Vhl and Hif1 Alpha
pubmed doi rcsb
molecule keywords TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
total genus 22
structure length 86
sequence length 95
ec nomenclature
pdb deposition date 2012-09-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF03931 Skp1_POZ Skp1 family, tetramerisation domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 4b9kE00
3HQIA 2E32B 4W9GB 2NZ0B 3OHVA 3GA1A 2MA9C 3ZUNB 3BIMA 3HVEB 2C9WC 2VPKA 4N9F5 5DAFA 1HV2A 1EOFA 5HYWB 2P1OA 3DRZA 2JZ3C 3C6NA 1CS3A 4B9KB 4UYIA 3ZTCB 5H7GA 3L2OA 4W9CB 1EOEA 2P1QA 2VKPA 2I2RA 3B84A 4W9EB 1R28A 1FS1B 3DCGB 4JGHC 4BGCA 4CXIA 4CP3A 4AWJB 2P1NA 3WSOB 4B9KE 5BXDA 2FNJC 4W9HH 2IHCA 4W9HB 3LNMB 1QDVA 4W9LB 2P1PA 4JTAB 2E31B 2Q81A 2Z8HA 1NN7A 1EODA 1LDKD 5HZGC 4APFA 3MKSA 4W9IB 3C6OA 2A79B 4W9FB 4I6JC 1S1GA 3OHUA 2IF5A 1LQBB 4U77A 2ASTA 4W9KB 2ASSA 1EXBE 3HVEA 3M52A 1QDWA 4J8ZA 5A15A 1LM8C 3V7DA 1P22B 5BO4C 2OVQA 5EUPA 3E4UA 5FTAA 1VCBB 3ZNGB 3FKCA 3LBZA 5BXHA 2IZVC 3HTMA 2OVRA 4U2NA 1R2BA 3I3NA 2R9RB 4W9JB 3C6PA 4WQOC 3ZRFB 4AJYC 4EOZA 3ZRCB 3OGLA 3M4TA 4JTCB 5LLIB 1R29A 3HU6A 5H7HA 1A68A 4CXJA 4AP2A 4JTDB 4BKTB 4CRHA 4U2MA 2YY9A 5JH5B 2OVPA 3ZTDB 4HXIA 4CXTA 3OGMA 4W9DB 5DADA 3M8VA 1FQVB 1BUOA 2NN2A 5A6RA 3ZKJB 4B95B 4BKSB 1NEXA 4ZOUA 4UIJA 1FS2B 3KVTA 3OGKA 3M5BA 3LUTB 2P1MA 5IBKA 2PPIA 5BXBA 1T1DA 1DSXA
chains in the Genus database with same CATH superfamily
3HQIA 2E32B 4W9GB 2NZ0B 3OHVA 3GA1A 2MA9C 3ZUNB 3BIMA 3HVEB 2C9WC 2VPKA 4N9F5 5DAFA 1HV2A 1EOFA 5HYWB 2P1OA 3DRZA 3DRYA 2JZ3C 3C6NA 1CS3A 4B9KB 4UYIA 3ZTCB 5H7GA 3L2OA 4W9CB 1EOEA 2P1QA 2VKPA 2I2RA 3B84A 4W9EB 1R28A 1FS1B 3DCGB 4JGHC 4BGCA 4CXIA 4CP3A 4AWJB 2P1NA 3WSOB 4B9KE 5BXDA 2FNJC 4W9HH 2IHCA 4W9HB 3LNMB 1QDVA 4W9LB 2P1PA 4JTAB 2E31B 2Q81A 2Z8HA 1NN7A 1EODA 4ZGCA 1LDKD 5HZGC 4APFA 3MKSA 4W9IB 3C6OA 2A79B 4W9FB 4I6JC 1S1GA 3OHUA 2IF5A 1LQBB 4U77A 2ASTA 4W9KB 2ASSA 1EXBE 3HVEA 3M52A 1QDWA 4J8ZA 5A15A 1LM8C 3V7DA 1P22B 5BO4C 2OVQA 5EUPA 3E4UA 5FTAA 1VCBB 3ZNGB 3FKCA 3LBZA 5BXHA 2IZVC 3HTMA 2OVRA 4U2NA 1R2BA 3I3NA 2R9RB 4W9JB 3C6PA 4WQOC 3ZRFB 4AJYC 4EOZA 3ZRCB 3OGLA 3M4TA 4JTCB 5LLIB 1R29A 3HU6A 5H7HA 1A68A 4CXJA 4AP2A 4JTDB 4BKTB 4CRHA 4U2MA 2YY9A 5JH5B 2OVPA 3ZTDB 4HXIA 4CXTA 3OGMA 4YY8A 4W9DB 5DADA 3M8VA 1FQVB 1BUOA 2NN2A 5A6RA 3ZKJB 4B95B 4BKSB 1NEXA 4ZOUA 4UIJA 1FS2B 3KVTA 3OGKA 3M5BA 3LUTB 2P1MA 5IBKA 3DRXA 2PPIA 5BXBA 1T1DA 1DSXA
chains in the Genus database with same CATH topology
3HQIA 2E32B 4W9GB 2NZ0B 3OHVA 3GA1A 2MA9C 3ZUNB 3BIMA 3HVEB 2C9WC 2VPKA 4N9F5 5DAFA 1HV2A 1EOFA 5HYWB 2P1OA 3DRZA 3DRYA 2JZ3C 3C6NA 1CS3A 4B9KB 4UYIA 3ZTCB 5H7GA 3L2OA 4W9CB 1EOEA 2P1QA 2VKPA 2I2RA 3B84A 4W9EB 1R28A 1FS1B 3DCGB 4JGHC 4BGCA 4CXIA 4CP3A 4AWJB 2P1NA 3WSOB 4B9KE 5BXDA 2FNJC 4W9HH 2IHCA 4W9HB 3LNMB 1QDVA 4W9LB 2P1PA 4JTAB 2E31B 2Q81A 2Z8HA 1NN7A 1EODA 4ZGCA 1LDKD 5HZGC 4APFA 3MKSA 4W9IB 3C6OA 2A79B 4W9FB 4I6JC 1S1GA 3OHUA 2IF5A 1LQBB 4U77A 2ASTA 4W9KB 2ASSA 1EXBE 3HVEA 3M52A 1QDWA 4J8ZA 5A15A 1LM8C 3V7DA 1P22B 5BO4C 2OVQA 5EUPA 3E4UA 5FTAA 1VCBB 3ZNGB 3FKCA 3LBZA 5BXHA 2IZVC 3HTMA 2OVRA 4U2NA 1R2BA 3I3NA 2R9RB 4W9JB 3C6PA 4WQOC 3ZRFB 4AJYC 4EOZA 3ZRCB 3OGLA 3M4TA 4JTCB 5LLIB 1R29A 3HU6A 5H7HA 1A68A 4CXJA 4AP2A 4JTDB 4BKTB 4CRHA 4U2MA 2YY9A 5JH5B 2OVPA 3ZTDB 4HXIA 4CXTA 3OGMA 4YY8A 4W9DB 5DADA 3M8VA 1FQVB 1BUOA 2NN2A 5A6RA 3ZKJB 4B95B 4BKSB 1NEXA 4ZOUA 4UIJA 1FS2B 3KVTA 3OGKA 3M5BA 3LUTB 2P1MA 5IBKA 3DRXA 2PPIA 5BXBA 1T1DA 1DSXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HQI A;  2E32 B;  4W9G B;  2NZ0 B;  3OHV A;  3GA1 A;  2MA9 C;  3ZUN B;  3BIM A;  3HVE B;  2C9W C;  2VPK A;  4N9F 5;  5DAF A;  1HV2 A;  1EOF A;  5HYW B;  2P1O A;  3DRZ A;  2JZ3 C;  3C6N A;  1CS3 A;  4B9K B;  4UYI A;  3ZTC B;  5H7G A;  3L2O A;  4W9C B;  1EOE A;  2P1Q A;  2VKP A;  2I2R A;  3B84 A;  4W9E B;  1R28 A;  1FS1 B;  3DCG B;  4JGH C;  4BGC A;  4CXI A;  4CP3 A;  4AWJ B;  2P1N A;  3WSO B;  4B9K E;  5BXD A;  2FNJ C;  4W9H H;  2IHC A;  4W9H B;  3LNM B;  1QDV A;  4W9L B;  2P1P A;  4JTA B;  2E31 B;  2Q81 A;  2Z8H A;  1NN7 A;  1EOD A;  1LDK D;  5HZG C;  4APF A;  3MKS A;  4W9I B;  3C6O A;  2A79 B;  4W9F B;  4I6J C;  1S1G A;  3OHU A;  2IF5 A;  1LQB B;  4U77 A;  2AST A;  4W9K B;  2ASS A;  1EXB E;  3HVE A;  3M52 A;  1QDW A;  4J8Z A;  5A15 A;  1LM8 C;  3V7D A;  1P22 B;  5BO4 C;  2OVQ A;  5EUP A;  3E4U A;  5FTA A;  1VCB B;  3ZNG B;  3FKC A;  3LBZ A;  5BXH A;  2IZV C;  3HTM A;  2OVR A;  4U2N A;  1R2B A;  3I3N A;  2R9R B;  4W9J B;  3C6P A;  4WQO C;  3ZRF B;  4AJY C;  4EOZ A;  3ZRC B;  3OGL A;  3M4T A;  4JTC B;  5LLI B;  1R29 A;  3HU6 A;  5H7H A;  1A68 A;  4CXJ A;  4AP2 A;  4JTD B;  4BKT B;  4CRH A;  4U2M A;  2YY9 A;  5JH5 B;  2OVP A;  3ZTD B;  4HXI A;  4CXT A;  3OGM A;  4W9D B;  5DAD A;  3M8V A;  1FQV B;  1BUO A;  2NN2 A;  5A6R A;  3ZKJ B;  4B95 B;  4BKS B;  1NEX A;  4ZOU A;  4UIJ A;  1FS2 B;  3KVT A;  3OGK A;  3M5B A;  3LUT B;  2P1M A;  5IBK A;  2PPI A;  5BXB A;  1T1D A;  1DSX A; 
#chains in the Genus database with same CATH topology
 3HQI A;  2E32 B;  4W9G B;  2NZ0 B;  3OHV A;  3GA1 A;  2MA9 C;  3ZUN B;  3BIM A;  3HVE B;  2C9W C;  2VPK A;  4N9F 5;  5DAF A;  1HV2 A;  1EOF A;  5HYW B;  2P1O A;  3DRZ A;  3DRY A;  2JZ3 C;  3C6N A;  1CS3 A;  4B9K B;  4UYI A;  3ZTC B;  5H7G A;  3L2O A;  4W9C B;  1EOE A;  2P1Q A;  2VKP A;  2I2R A;  3B84 A;  4W9E B;  1R28 A;  1FS1 B;  3DCG B;  4JGH C;  4BGC A;  4CXI A;  4CP3 A;  4AWJ B;  2P1N A;  3WSO B;  4B9K E;  5BXD A;  2FNJ C;  4W9H H;  2IHC A;  4W9H B;  3LNM B;  1QDV A;  4W9L B;  2P1P A;  4JTA B;  2E31 B;  2Q81 A;  2Z8H A;  1NN7 A;  1EOD A;  4ZGC A;  1LDK D;  5HZG C;  4APF A;  3MKS A;  4W9I B;  3C6O A;  2A79 B;  4W9F B;  4I6J C;  1S1G A;  3OHU A;  2IF5 A;  1LQB B;  4U77 A;  2AST A;  4W9K B;  2ASS A;  1EXB E;  3HVE A;  3M52 A;  1QDW A;  4J8Z A;  5A15 A;  1LM8 C;  3V7D A;  1P22 B;  5BO4 C;  2OVQ A;  5EUP A;  3E4U A;  5FTA A;  1VCB B;  3ZNG B;  3FKC A;  3LBZ A;  5BXH A;  2IZV C;  3HTM A;  2OVR A;  4U2N A;  1R2B A;  3I3N A;  2R9R B;  4W9J B;  3C6P A;  4WQO C;  3ZRF B;  4AJY C;  4EOZ A;  3ZRC B;  3OGL A;  3M4T A;  4JTC B;  5LLI B;  1R29 A;  3HU6 A;  5H7H A;  1A68 A;  4CXJ A;  4AP2 A;  4JTD B;  4BKT B;  4CRH A;  4U2M A;  2YY9 A;  5JH5 B;  2OVP A;  3ZTD B;  4HXI A;  4CXT A;  3OGM A;  4YY8 A;  4W9D B;  5DAD A;  3M8V A;  1FQV B;  1BUO A;  2NN2 A;  5A6R A;  3ZKJ B;  4B95 B;  4BKS B;  1NEX A;  4ZOU A;  4UIJ A;  1FS2 B;  3KVT A;  3OGK A;  3M5B A;  3LUT B;  2P1M A;  5IBK A;  3DRX A;  2PPI A;  5BXB A;  1T1D A;  1DSX A; 
#chains in the Genus database with same CATH homology
 3HQI A;  2E32 B;  4W9G B;  2NZ0 B;  3OHV A;  3GA1 A;  2MA9 C;  3ZUN B;  3BIM A;  3HVE B;  2C9W C;  2VPK A;  4N9F 5;  5DAF A;  1HV2 A;  1EOF A;  5HYW B;  2P1O A;  3DRZ A;  3DRY A;  2JZ3 C;  3C6N A;  1CS3 A;  4B9K B;  4UYI A;  3ZTC B;  5H7G A;  3L2O A;  4W9C B;  1EOE A;  2P1Q A;  2VKP A;  2I2R A;  3B84 A;  4W9E B;  1R28 A;  1FS1 B;  3DCG B;  4JGH C;  4BGC A;  4CXI A;  4CP3 A;  4AWJ B;  2P1N A;  3WSO B;  4B9K E;  5BXD A;  2FNJ C;  4W9H H;  2IHC A;  4W9H B;  3LNM B;  1QDV A;  4W9L B;  2P1P A;  4JTA B;  2E31 B;  2Q81 A;  2Z8H A;  1NN7 A;  1EOD A;  4ZGC A;  1LDK D;  5HZG C;  4APF A;  3MKS A;  4W9I B;  3C6O A;  2A79 B;  4W9F B;  4I6J C;  1S1G A;  3OHU A;  2IF5 A;  1LQB B;  4U77 A;  2AST A;  4W9K B;  2ASS A;  1EXB E;  3HVE A;  3M52 A;  1QDW A;  4J8Z A;  5A15 A;  1LM8 C;  3V7D A;  1P22 B;  5BO4 C;  2OVQ A;  5EUP A;  3E4U A;  5FTA A;  1VCB B;  3ZNG B;  3FKC A;  3LBZ A;  5BXH A;  2IZV C;  3HTM A;  2OVR A;  4U2N A;  1R2B A;  3I3N A;  2R9R B;  4W9J B;  3C6P A;  4WQO C;  3ZRF B;  4AJY C;  4EOZ A;  3ZRC B;  3OGL A;  3M4T A;  4JTC B;  5LLI B;  1R29 A;  3HU6 A;  5H7H A;  1A68 A;  4CXJ A;  4AP2 A;  4JTD B;  4BKT B;  4CRH A;  4U2M A;  2YY9 A;  5JH5 B;  2OVP A;  3ZTD B;  4HXI A;  4CXT A;  3OGM A;  4YY8 A;  4W9D B;  5DAD A;  3M8V A;  1FQV B;  1BUO A;  2NN2 A;  5A6R A;  3ZKJ B;  4B95 B;  4BKS B;  1NEX A;  4ZOU A;  4UIJ A;  1FS2 B;  3KVT A;  3OGK A;  3M5B A;  3LUT B;  2P1M A;  5IBK A;  3DRX A;  2PPI A;  5BXB A;  1T1D A;  1DSX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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