4BGJ | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	135
structure length	118
Chain Sequence	PRNLAAWKISIPYVDFFEERIPVFCIDVERNDRRHEPEHWSVYRRYLEFYVLESKLTEFHGAFPDAQLPSKRIIGPKNYEFLKSKREEFQEYLQKLLQHPELSNSQLLADFLSPNQFL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 118 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Crystal Structure of the Phox-Homology Domain of Human Sorting Nexin 14 rcsb
molecule keywords	SORTING NEXIN-14
total genus	34
structure length	118
sequence length	135
ec nomenclature
pdb deposition date	2013-03-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	4bgjA00

4PQPA 4AKVA 2CSKA 1XTEA 3P0CA 4P2JA 1OCSA 3HPCX 2IWLX 2REAA 4BGJA 1XTNA 2L73A 4PQOA 2WWEA 3DYTA 2DYBA 4IKDA 4IKBB 2YPSA 1GD5A 2CZOA 3HPBA 2I4KA 3FOGA 2RAKA 4ON3A 1KQ6A 1KMDA 1OCUA 4IKBA 2AR5A 2ETTA 3LUIA 4HASA 2RAJA 1O7KA 2RAIA 1H6HA 2V14A 2V6VA 3IQ2A 4OXWA 4P2IA 4PZGA 4AZ9A 2REDA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4PQP A;  4AKV A;  2CSK A;  1XTE A;  3P0C A;  4P2J A;  1OCS A;  3HPC X;  2IWL X;  2REA A;  4BGJ A;  1XTN A;  2L73 A;  4PQO A;  2WWE A;  3DYT A;  2DYB A;  4IKD A;  4IKB B;  2YPS A;  1GD5 A;  2CZO A;  3HPB A;  2I4K A;  3FOG A;  2RAK A;  4ON3 A;  1KQ6 A;  1KMD A;  1OCU A;  4IKB A;  2AR5 A;  2ETT A;  3LUI A;  4HAS A;  2RAJ A;  1O7K A;  2RAI A;  1H6H A;  2V14 A;  2V6V A;  3IQ2 A;  4OXW A;  4P2I A;  4PZG A;  4AZ9 A;  2RED A; 
#chains in the Genus database with same CATH topology
 4PQP A;  4AKV A;  2CSK A;  1XTE A;  3P0C A;  4P2J A;  1OCS A;  3HPC X;  2IWL X;  2REA A;  4BGJ A;  1XTN A;  2L73 A;  4PQO A;  2WWE A;  3DYT A;  2DYB A;  4IKD A;  4IKB B;  2YPS A;  1GD5 A;  2CZO A;  3HPB A;  2I4K A;  3FOG A;  2RAK A;  4ON3 A;  1KQ6 A;  1KMD A;  1OCU A;  4IKB A;  2AR5 A;  2ETT A;  3LUI A;  4HAS A;  2RAJ A;  1O7K A;  2RAI A;  1H6H A;  2V14 A;  2V6V A;  3IQ2 A;  4OXW A;  4P2I A;  4PZG A;  4AZ9 A;  2RED A; 
#chains in the Genus database with same CATH homology
 4PQP A;  4AKV A;  2CSK A;  1XTE A;  3P0C A;  4P2J A;  1OCS A;  3HPC X;  2IWL X;  2REA A;  4BGJ A;  1XTN A;  2L73 A;  4PQO A;  2WWE A;  3DYT A;  2DYB A;  4IKD A;  4IKB B;  2YPS A;  1GD5 A;  2CZO A;  3HPB A;  2I4K A;  3FOG A;  2RAK A;  4ON3 A;  1KQ6 A;  1KMD A;  1OCU A;  4IKB A;  2AR5 A;  2ETT A;  3LUI A;  4HAS A;  2RAJ A;  1O7K A;  2RAI A;  1H6H A;  2V14 A;  2V6V A;  3IQ2 A;  4OXW A;  4P2I A;  4PZG A;  4AZ9 A;  2RED A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4BGJA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations