4CRH | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	104
structure length	94
Chain Sequence	MGEVIHLNVGGKRFSTSRQTLTWIPDSFFSSLLSTLKDETGAIFIDRDPTVFAPILNFLRTKELDSSLLHEAQFYGLTPLVRRLQLREELDRSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein-binding protein
source organism	Homo sapiens
publication title	Structural complexity in the KCTD family of Cullin3-dependent E3 ubiquitin ligases. pubmed doi rcsb
molecule keywords	SH3KBP1-BINDING PROTEIN 1
total genus	31
structure length	94
sequence length	104
ec nomenclature
pdb deposition date	2014-02-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02214	BTB_2	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	4crhA00

1R28A 3FKCA 2R9RB 2YY9A 2I2RA 5BXHA 4WQOC 3C6NA 5DADA 2IHCA 5EUPA 4AWJB 1EOEA 3ZTCB 4CP3A 4APFA 5BXBA 3HVEA 3KVTA 1LDKD 3LBZA 4ZOUA 1EXBE 4CRHA 4CXTA 4U2MA 4EOZA 3HVEB 5FTAA 3OGMA 2P1QA 1VCBB 2OVRA 3ZTDB 2VKPA 1LQBB 3OHVA 5A15A 3MKSA 1QDWA 1NN7A 3C6PA 3OHUA 5IBKA 5DAFA 4JTDB 2P1PA 4W9DB 3HU6A 4JTAB 2IZVC 4U2NA 4UIJA 1QDVA 4AP2A 2E32B 3M52A 4W9CB 3ZRCB 4BGCA 3WSOB 3LUTB 4B95B 4JTCB 4W9GB 4J8ZA 3C6OA 5H7GA 5BO4C 3E4UA 1R2BA 1FQVB 4W9HB 3HTMA 4BKSB 2C9WC 1BUOA 4W9KB 4AJYC 2E31B 4W9EB 1A68A 2FNJC 3M8VA 4CXIA 2NZ0B 4JGHC 3DRZA 5HYWB 4CXJA 1R29A 1LM8C 1T1DA 2PPIA 2VPKA 4U77A 4W9FB 2MA9C 1NEXA 2NN2A 2P1NA 1P22B 4W9LB 1EODA 3L2OA 5LLIB 4N9F5 2ASTA 5A6RA 3GA1A 3M5BA 1DSXA 3ZUNB 1EOFA 4UYIA 5JH5B 1CS3A 2OVPA 1FS2B 5BXDA 1HV2A 1S1GA 3ZRFB 3BIMA 3V7DA 4W9IB 3OGLA 4W9HH 4I6JC 2OVQA 2JZ3C 3DCGB 3B84A 3LNMB 2P1MA 2A79B 4BKTB 2IF5A 4B9KB 5H7HA 3M4TA 2P1OA 3OGKA 2Q81A 3ZKJB 3I3NA 3HQIA 2ASSA 2Z8HA 4HXIA 5HZGC 4W9JB 4B9KE 3ZNGB 1FS1B
chains in the Genus database with same CATH superfamily

1R28A 3FKCA 2R9RB 2YY9A 2I2RA 5BXHA 4WQOC 3C6NA 5DADA 2IHCA 5EUPA 4AWJB 1EOEA 3ZTCB 4CP3A 4APFA 5BXBA 3HVEA 3KVTA 4YY8A 1LDKD 3LBZA 4ZOUA 1EXBE 4CRHA 3DRXA 4CXTA 4U2MA 4EOZA 3HVEB 5FTAA 3OGMA 2P1QA 1VCBB 2OVRA 3ZTDB 3ZNGB 2VKPA 1LQBB 3OHVA 5A15A 3MKSA 1QDWA 1NN7A 3C6PA 3OHUA 5IBKA 5DAFA 4JTDB 2P1PA 4W9DB 3HU6A 4JTAB 2IZVC 4U2NA 4UIJA 1QDVA 4AP2A 2E32B 3M52A 4W9CB 3ZRCB 4BGCA 3WSOB 3LUTB 4B95B 4JTCB 4W9GB 4J8ZA 3C6OA 5H7GA 5BO4C 3E4UA 1R2BA 1FQVB 4W9HB 3HTMA 4BKSB 2C9WC 1BUOA 4W9KB 4AJYC 2E31B 4W9EB 1A68A 2FNJC 3M8VA 4CXIA 2NZ0B 4JGHC 3DRZA 5HYWB 4CXJA 1R29A 1LM8C 1T1DA 2PPIA 2VPKA 4ZGCA 4U77A 4W9FB 2MA9C 1NEXA 2NN2A 2P1NA 1P22B 4W9LB 1EODA 3L2OA 5LLIB 4N9F5 2ASTA 5A6RA 3GA1A 3M5BA 1DSXA 3ZUNB 1EOFA 4UYIA 5JH5B 1CS3A 2OVPA 1FS2B 5BXDA 1HV2A 1S1GA 3ZRFB 3BIMA 3V7DA 4W9IB 3OGLA 4W9HH 4I6JC 2OVQA 2JZ3C 3DCGB 3B84A 3LNMB 2P1MA 2A79B 4BKTB 2IF5A 4B9KB 5H7HA 3M4TA 2P1OA 3OGKA 2Q81A 3ZKJB 3I3NA 3HQIA 2ASSA 2Z8HA 4HXIA 5HZGC 4W9JB 4B9KE 3DRYA 1FS1B
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1R28 A;  3FKC A;  2R9R B;  2YY9 A;  2I2R A;  5BXH A;  4WQO C;  3C6N A;  5DAD A;  2IHC A;  5EUP A;  4AWJ B;  1EOE A;  3ZTC B;  4CP3 A;  4APF A;  5BXB A;  3HVE A;  3KVT A;  1LDK D;  3LBZ A;  4ZOU A;  1EXB E;  4CRH A;  4CXT A;  4U2M A;  4EOZ A;  3HVE B;  5FTA A;  3OGM A;  2P1Q A;  1VCB B;  2OVR A;  3ZTD B;  2VKP A;  1LQB B;  3OHV A;  5A15 A;  3MKS A;  1QDW A;  1NN7 A;  3C6P A;  3OHU A;  5IBK A;  5DAF A;  4JTD B;  2P1P A;  4W9D B;  3HU6 A;  4JTA B;  2IZV C;  4U2N A;  4UIJ A;  1QDV A;  4AP2 A;  2E32 B;  3M52 A;  4W9C B;  3ZRC B;  4BGC A;  3WSO B;  3LUT B;  4B95 B;  4JTC B;  4W9G B;  4J8Z A;  3C6O A;  5H7G A;  5BO4 C;  3E4U A;  1R2B A;  1FQV B;  4W9H B;  3HTM A;  4BKS B;  2C9W C;  1BUO A;  4W9K B;  4AJY C;  2E31 B;  4W9E B;  1A68 A;  2FNJ C;  3M8V A;  4CXI A;  2NZ0 B;  4JGH C;  3DRZ A;  5HYW B;  4CXJ A;  1R29 A;  1LM8 C;  1T1D A;  2PPI A;  2VPK A;  4U77 A;  4W9F B;  2MA9 C;  1NEX A;  2NN2 A;  2P1N A;  1P22 B;  4W9L B;  1EOD A;  3L2O A;  5LLI B;  4N9F 5;  2AST A;  5A6R A;  3GA1 A;  3M5B A;  1DSX A;  3ZUN B;  1EOF A;  4UYI A;  5JH5 B;  1CS3 A;  2OVP A;  1FS2 B;  5BXD A;  1HV2 A;  1S1G A;  3ZRF B;  3BIM A;  3V7D A;  4W9I B;  3OGL A;  4W9H H;  4I6J C;  2OVQ A;  2JZ3 C;  3DCG B;  3B84 A;  3LNM B;  2P1M A;  2A79 B;  4BKT B;  2IF5 A;  4B9K B;  5H7H A;  3M4T A;  2P1O A;  3OGK A;  2Q81 A;  3ZKJ B;  3I3N A;  3HQI A;  2ASS A;  2Z8H A;  4HXI A;  5HZG C;  4W9J B;  4B9K E;  3ZNG B;  1FS1 B; 
#chains in the Genus database with same CATH topology
 1R28 A;  3FKC A;  2R9R B;  2YY9 A;  2I2R A;  5BXH A;  4WQO C;  3C6N A;  5DAD A;  2IHC A;  5EUP A;  4AWJ B;  1EOE A;  3ZTC B;  4CP3 A;  4APF A;  5BXB A;  3HVE A;  3KVT A;  4YY8 A;  1LDK D;  3LBZ A;  4ZOU A;  1EXB E;  4CRH A;  3DRX A;  4CXT A;  4U2M A;  4EOZ A;  3HVE B;  5FTA A;  3OGM A;  2P1Q A;  1VCB B;  2OVR A;  3ZTD B;  3ZNG B;  2VKP A;  1LQB B;  3OHV A;  5A15 A;  3MKS A;  1QDW A;  1NN7 A;  3C6P A;  3OHU A;  5IBK A;  5DAF A;  4JTD B;  2P1P A;  4W9D B;  3HU6 A;  4JTA B;  2IZV C;  4U2N A;  4UIJ A;  1QDV A;  4AP2 A;  2E32 B;  3M52 A;  4W9C B;  3ZRC B;  4BGC A;  3WSO B;  3LUT B;  4B95 B;  4JTC B;  4W9G B;  4J8Z A;  3C6O A;  5H7G A;  5BO4 C;  3E4U A;  1R2B A;  1FQV B;  4W9H B;  3HTM A;  4BKS B;  2C9W C;  1BUO A;  4W9K B;  4AJY C;  2E31 B;  4W9E B;  1A68 A;  2FNJ C;  3M8V A;  4CXI A;  2NZ0 B;  4JGH C;  3DRZ A;  5HYW B;  4CXJ A;  1R29 A;  1LM8 C;  1T1D A;  2PPI A;  2VPK A;  4ZGC A;  4U77 A;  4W9F B;  2MA9 C;  1NEX A;  2NN2 A;  2P1N A;  1P22 B;  4W9L B;  1EOD A;  3L2O A;  5LLI B;  4N9F 5;  2AST A;  5A6R A;  3GA1 A;  3M5B A;  1DSX A;  3ZUN B;  1EOF A;  4UYI A;  5JH5 B;  1CS3 A;  2OVP A;  1FS2 B;  5BXD A;  1HV2 A;  1S1G A;  3ZRF B;  3BIM A;  3V7D A;  4W9I B;  3OGL A;  4W9H H;  4I6J C;  2OVQ A;  2JZ3 C;  3DCG B;  3B84 A;  3LNM B;  2P1M A;  2A79 B;  4BKT B;  2IF5 A;  4B9K B;  5H7H A;  3M4T A;  2P1O A;  3OGK A;  2Q81 A;  3ZKJ B;  3I3N A;  3HQI A;  2ASS A;  2Z8H A;  4HXI A;  5HZG C;  4W9J B;  4B9K E;  3DRY A;  1FS1 B; 
#chains in the Genus database with same CATH homology
 1R28 A;  3FKC A;  2R9R B;  2YY9 A;  2I2R A;  5BXH A;  4WQO C;  3C6N A;  5DAD A;  2IHC A;  5EUP A;  4AWJ B;  1EOE A;  3ZTC B;  4CP3 A;  4APF A;  5BXB A;  3HVE A;  3KVT A;  4YY8 A;  1LDK D;  3LBZ A;  4ZOU A;  1EXB E;  4CRH A;  3DRX A;  4CXT A;  4U2M A;  4EOZ A;  3HVE B;  5FTA A;  3OGM A;  2P1Q A;  1VCB B;  2OVR A;  3ZTD B;  3ZNG B;  2VKP A;  1LQB B;  3OHV A;  5A15 A;  3MKS A;  1QDW A;  1NN7 A;  3C6P A;  3OHU A;  5IBK A;  5DAF A;  4JTD B;  2P1P A;  4W9D B;  3HU6 A;  4JTA B;  2IZV C;  4U2N A;  4UIJ A;  1QDV A;  4AP2 A;  2E32 B;  3M52 A;  4W9C B;  3ZRC B;  4BGC A;  3WSO B;  3LUT B;  4B95 B;  4JTC B;  4W9G B;  4J8Z A;  3C6O A;  5H7G A;  5BO4 C;  3E4U A;  1R2B A;  1FQV B;  4W9H B;  3HTM A;  4BKS B;  2C9W C;  1BUO A;  4W9K B;  4AJY C;  2E31 B;  4W9E B;  1A68 A;  2FNJ C;  3M8V A;  4CXI A;  2NZ0 B;  4JGH C;  3DRZ A;  5HYW B;  4CXJ A;  1R29 A;  1LM8 C;  1T1D A;  2PPI A;  2VPK A;  4ZGC A;  4U77 A;  4W9F B;  2MA9 C;  1NEX A;  2NN2 A;  2P1N A;  1P22 B;  4W9L B;  1EOD A;  3L2O A;  5LLI B;  4N9F 5;  2AST A;  5A6R A;  3GA1 A;  3M5B A;  1DSX A;  3ZUN B;  1EOF A;  4UYI A;  5JH5 B;  1CS3 A;  2OVP A;  1FS2 B;  5BXD A;  1HV2 A;  1S1G A;  3ZRF B;  3BIM A;  3V7D A;  4W9I B;  3OGL A;  4W9H H;  4I6J C;  2OVQ A;  2JZ3 C;  3DCG B;  3B84 A;  3LNM B;  2P1M A;  2A79 B;  4BKT B;  2IF5 A;  4B9K B;  5H7H A;  3M4T A;  2P1O A;  3OGK A;  2Q81 A;  3ZKJ B;  3I3N A;  3HQI A;  2ASS A;  2Z8H A;  4HXI A;  5HZG C;  4W9J B;  4B9K E;  3DRY A;  1FS1 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4CRHA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations