4HAS | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	104
structure length	104
Chain Sequence	AVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKREFANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSES

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Crystal structure of PX domain of human sorting nexin SNX27 rcsb
molecule keywords	Sorting nexin-27
total genus	31
structure length	104
sequence length	104
chains with identical sequence	B
ec nomenclature
pdb deposition date	2012-09-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	4hasA00

2DYBA 2V6VA 2RAJA 2YPSA 2RAKA 3IQ2A 4PQPA 3HPBA 2CZOA 3LUIA 4AZ9A 4IKDA 1KQ6A 1XTNA 1XTEA 2I4KA 4AKVA 2ETTA 1H6HA 4IKBA 4P2JA 2WWEA 2REAA 3P0CA 2RAIA 2CSKA 4ON3A 4PZGA 2L73A 2REDA 1OCUA 2AR5A 4PQOA 4P2IA 1GD5A 1KMDA 2IWLX 3FOGA 4BGJA 1O7KA 4IKBB 3HPCX 4HASA 4OXWA 1OCSA 3DYTA 2V14A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2DYB A;  2V6V A;  2RAJ A;  2YPS A;  2RAK A;  3IQ2 A;  4PQP A;  3HPB A;  2CZO A;  3LUI A;  4AZ9 A;  4IKD A;  1KQ6 A;  1XTN A;  1XTE A;  2I4K A;  4AKV A;  2ETT A;  1H6H A;  4IKB A;  4P2J A;  2WWE A;  2REA A;  3P0C A;  2RAI A;  2CSK A;  4ON3 A;  4PZG A;  2L73 A;  2RED A;  1OCU A;  2AR5 A;  4PQO A;  4P2I A;  1GD5 A;  1KMD A;  2IWL X;  3FOG A;  4BGJ A;  1O7K A;  4IKB B;  3HPC X;  4HAS A;  4OXW A;  1OCS A;  3DYT A;  2V14 A; 
#chains in the Genus database with same CATH topology
 2DYB A;  2V6V A;  2RAJ A;  2YPS A;  2RAK A;  3IQ2 A;  4PQP A;  3HPB A;  2CZO A;  3LUI A;  4AZ9 A;  4IKD A;  1KQ6 A;  1XTN A;  1XTE A;  2I4K A;  4AKV A;  2ETT A;  1H6H A;  4IKB A;  4P2J A;  2WWE A;  2REA A;  3P0C A;  2RAI A;  2CSK A;  4ON3 A;  4PZG A;  2L73 A;  2RED A;  1OCU A;  2AR5 A;  4PQO A;  4P2I A;  1GD5 A;  1KMD A;  2IWL X;  3FOG A;  4BGJ A;  1O7K A;  4IKB B;  3HPC X;  4HAS A;  4OXW A;  1OCS A;  3DYT A;  2V14 A; 
#chains in the Genus database with same CATH homology
 2DYB A;  2V6V A;  2RAJ A;  2YPS A;  2RAK A;  3IQ2 A;  4PQP A;  3HPB A;  2CZO A;  3LUI A;  4AZ9 A;  4IKD A;  1KQ6 A;  1XTN A;  1XTE A;  2I4K A;  4AKV A;  2ETT A;  1H6H A;  4IKB A;  4P2J A;  2WWE A;  2REA A;  3P0C A;  2RAI A;  2CSK A;  4ON3 A;  4PZG A;  2L73 A;  2RED A;  1OCU A;  2AR5 A;  4PQO A;  4P2I A;  1GD5 A;  1KMD A;  2IWL X;  3FOG A;  4BGJ A;  1O7K A;  4IKB B;  3HPC X;  4HAS A;  4OXW A;  1OCS A;  3DYT A;  2V14 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4HASA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations