4IKB | Genus

Total Genus 35

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	35
sequence length	127
structure length	125
Chain Sequence	EVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSVRRRYREFVWLRKQLQRNAGLVPVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIEAVQG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 125 atoms

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125 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Structure of Sorting Nexin 11 (SNX11) Reveals a Novel Extended PX Domain (PXe Domain) Critical for the Inhibition of Sorting Nexin 10 (SNX10) Induced Vacuolation rcsb
molecule keywords	Sorting nexin-11
total genus	35
structure length	125
sequence length	127
ec nomenclature
pdb deposition date	2012-12-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	4ikbB00

3HPCX 1O7KA 2REAA 3FOGA 1OCUA 2WWEA 2AR5A 1H6HA 2REDA 4OXWA 2CSKA 2DYBA 2RAKA 4PQPA 4BGJA 4P2JA 1KMDA 3DYTA 2V14A 3P0CA 2RAJA 4IKBB 4IKBA 4HASA 1GD5A 1XTNA 2L73A 3IQ2A 4IKDA 1OCSA 4ON3A 2V6VA 2RAIA 2CZOA 4PQOA 4AKVA 2YPSA 1KQ6A 1XTEA 2IWLX 4AZ9A 3HPBA 3LUIA 4PZGA 2ETTA 4P2IA 2I4KA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3HPC X;  1O7K A;  2REA A;  3FOG A;  1OCU A;  2WWE A;  2AR5 A;  1H6H A;  2RED A;  4OXW A;  2CSK A;  2DYB A;  2RAK A;  4PQP A;  4BGJ A;  4P2J A;  1KMD A;  3DYT A;  2V14 A;  3P0C A;  2RAJ A;  4IKB B;  4IKB A;  4HAS A;  1GD5 A;  1XTN A;  2L73 A;  3IQ2 A;  4IKD A;  1OCS A;  4ON3 A;  2V6V A;  2RAI A;  2CZO A;  4PQO A;  4AKV A;  2YPS A;  1KQ6 A;  1XTE A;  2IWL X;  4AZ9 A;  3HPB A;  3LUI A;  4PZG A;  2ETT A;  4P2I A;  2I4K A; 
#chains in the Genus database with same CATH topology
 3HPC X;  1O7K A;  2REA A;  3FOG A;  1OCU A;  2WWE A;  2AR5 A;  1H6H A;  2RED A;  4OXW A;  2CSK A;  2DYB A;  2RAK A;  4PQP A;  4BGJ A;  4P2J A;  1KMD A;  3DYT A;  2V14 A;  3P0C A;  2RAJ A;  4IKB B;  4IKB A;  4HAS A;  1GD5 A;  1XTN A;  2L73 A;  3IQ2 A;  4IKD A;  1OCS A;  4ON3 A;  2V6V A;  2RAI A;  2CZO A;  4PQO A;  4AKV A;  2YPS A;  1KQ6 A;  1XTE A;  2IWL X;  4AZ9 A;  3HPB A;  3LUI A;  4PZG A;  2ETT A;  4P2I A;  2I4K A; 
#chains in the Genus database with same CATH homology
 3HPC X;  1O7K A;  2REA A;  3FOG A;  1OCU A;  2WWE A;  2AR5 A;  1H6H A;  2RED A;  4OXW A;  2CSK A;  2DYB A;  2RAK A;  4PQP A;  4BGJ A;  4P2J A;  1KMD A;  3DYT A;  2V14 A;  3P0C A;  2RAJ A;  4IKB B;  4IKB A;  4HAS A;  1GD5 A;  1XTN A;  2L73 A;  3IQ2 A;  4IKD A;  1OCS A;  4ON3 A;  2V6V A;  2RAI A;  2CZO A;  4PQO A;  4AKV A;  2YPS A;  1KQ6 A;  1XTE A;  2IWL X;  4AZ9 A;  3HPB A;  3LUI A;  4PZG A;  2ETT A;  4P2I A;  2I4K A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4IKBB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations