4ON3 | Genus

Total Genus 47

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	47
sequence length	150
structure length	150
Chain Sequence	EEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMAFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Structure of human SNX10 reveals insights into its role in human autosomal recessive osteopetrosis. pubmed doi rcsb
molecule keywords	Sorting nexin-10
total genus	47
structure length	150
sequence length	150
chains with identical sequence	B
ec nomenclature
pdb deposition date	2014-01-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	4on3A00

3HPBA 4IKBA 1H6HA 2L73A 2RAKA 4PZGA 2WWEA 4ON3A 2REDA 4P2JA 4PQPA 2REAA 2I4KA 3P0CA 1XTEA 2YPSA 2IWLX 2RAIA 1GD5A 4P2IA 2DYBA 4AKVA 2RAJA 2ETTA 1KMDA 3HPCX 4AZ9A 3LUIA 1OCUA 4IKBB 4IKDA 2V14A 4PQOA 4BGJA 2V6VA 1OCSA 1O7KA 3IQ2A 1KQ6A 3DYTA 3FOGA 2CSKA 4OXWA 2CZOA 2AR5A 4HASA 1XTNA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3HPB A;  4IKB A;  1H6H A;  2L73 A;  2RAK A;  4PZG A;  2WWE A;  4ON3 A;  2RED A;  4P2J A;  4PQP A;  2REA A;  2I4K A;  3P0C A;  1XTE A;  2YPS A;  2IWL X;  2RAI A;  1GD5 A;  4P2I A;  2DYB A;  4AKV A;  2RAJ A;  2ETT A;  1KMD A;  3HPC X;  4AZ9 A;  3LUI A;  1OCU A;  4IKB B;  4IKD A;  2V14 A;  4PQO A;  4BGJ A;  2V6V A;  1OCS A;  1O7K A;  3IQ2 A;  1KQ6 A;  3DYT A;  3FOG A;  2CSK A;  4OXW A;  2CZO A;  2AR5 A;  4HAS A;  1XTN A; 
#chains in the Genus database with same CATH topology
 3HPB A;  4IKB A;  1H6H A;  2L73 A;  2RAK A;  4PZG A;  2WWE A;  4ON3 A;  2RED A;  4P2J A;  4PQP A;  2REA A;  2I4K A;  3P0C A;  1XTE A;  2YPS A;  2IWL X;  2RAI A;  1GD5 A;  4P2I A;  2DYB A;  4AKV A;  2RAJ A;  2ETT A;  1KMD A;  3HPC X;  4AZ9 A;  3LUI A;  1OCU A;  4IKB B;  4IKD A;  2V14 A;  4PQO A;  4BGJ A;  2V6V A;  1OCS A;  1O7K A;  3IQ2 A;  1KQ6 A;  3DYT A;  3FOG A;  2CSK A;  4OXW A;  2CZO A;  2AR5 A;  4HAS A;  1XTN A; 
#chains in the Genus database with same CATH homology
 3HPB A;  4IKB A;  1H6H A;  2L73 A;  2RAK A;  4PZG A;  2WWE A;  4ON3 A;  2RED A;  4P2J A;  4PQP A;  2REA A;  2I4K A;  3P0C A;  1XTE A;  2YPS A;  2IWL X;  2RAI A;  1GD5 A;  4P2I A;  2DYB A;  4AKV A;  2RAJ A;  2ETT A;  1KMD A;  3HPC X;  4AZ9 A;  3LUI A;  1OCU A;  4IKB B;  4IKD A;  2V14 A;  4PQO A;  4BGJ A;  2V6V A;  1OCS A;  1O7K A;  3IQ2 A;  1KQ6 A;  3DYT A;  3FOG A;  2CSK A;  4OXW A;  2CZO A;  2AR5 A;  4HAS A;  1XTN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4ON3A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations