4PZG | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	152
structure length	152
Chain Sequence	EEFVSVWVRDPRIQKEDFWHSYIDYEICIHTNSMCFTMKTSCVRRRYREFVWLRQRLQSNALLVQLPELPSKNLFFNMNNRQHVDQRRQGLEDFLRKVLQNALLLSDSSLHLFLQSHLNSEDIEACVSGQTKYSVEEAIHKFALMNRRFPEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 152 atoms

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152 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein transport
source organism	Homo sapiens
publication title	Structure of human SNX10 reveals insights into its role in human autosomal recessive osteopetrosis. pubmed doi rcsb
molecule keywords	Sorting nexin-10
total genus	49
structure length	152
sequence length	152
chains with identical sequence	B
ec nomenclature
pdb deposition date	2014-03-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00787	PX	PX domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	4pzgA00

4P2IA 2CZOA 2REAA 4IKDA 3HPCX 2WWEA 3FOGA 4AKVA 4AZ9A 4BGJA 4OXWA 3DYTA 1H6HA 2RAIA 2IWLX 4PQOA 1GD5A 1O7KA 1XTEA 2DYBA 2V14A 2RAJA 2REDA 3P0CA 1KQ6A 1KMDA 2L73A 2RAKA 4IKBB 4P2JA 4IKBA 2CSKA 4ON3A 2I4KA 4PQPA 1XTNA 1OCUA 3HPBA 3IQ2A 2AR5A 4PZGA 1OCSA 3LUIA 4HASA 2V6VA 2ETTA 2YPSA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4P2I A;  2CZO A;  2REA A;  4IKD A;  3HPC X;  2WWE A;  3FOG A;  4AKV A;  4AZ9 A;  4BGJ A;  4OXW A;  3DYT A;  1H6H A;  2RAI A;  2IWL X;  4PQO A;  1GD5 A;  1O7K A;  1XTE A;  2DYB A;  2V14 A;  2RAJ A;  2RED A;  3P0C A;  1KQ6 A;  1KMD A;  2L73 A;  2RAK A;  4IKB B;  4P2J A;  4IKB A;  2CSK A;  4ON3 A;  2I4K A;  4PQP A;  1XTN A;  1OCU A;  3HPB A;  3IQ2 A;  2AR5 A;  4PZG A;  1OCS A;  3LUI A;  4HAS A;  2V6V A;  2ETT A;  2YPS A; 
#chains in the Genus database with same CATH topology
 4P2I A;  2CZO A;  2REA A;  4IKD A;  3HPC X;  2WWE A;  3FOG A;  4AKV A;  4AZ9 A;  4BGJ A;  4OXW A;  3DYT A;  1H6H A;  2RAI A;  2IWL X;  4PQO A;  1GD5 A;  1O7K A;  1XTE A;  2DYB A;  2V14 A;  2RAJ A;  2RED A;  3P0C A;  1KQ6 A;  1KMD A;  2L73 A;  2RAK A;  4IKB B;  4P2J A;  4IKB A;  2CSK A;  4ON3 A;  2I4K A;  4PQP A;  1XTN A;  1OCU A;  3HPB A;  3IQ2 A;  2AR5 A;  4PZG A;  1OCS A;  3LUI A;  4HAS A;  2V6V A;  2ETT A;  2YPS A; 
#chains in the Genus database with same CATH homology
 4P2I A;  2CZO A;  2REA A;  4IKD A;  3HPC X;  2WWE A;  3FOG A;  4AKV A;  4AZ9 A;  4BGJ A;  4OXW A;  3DYT A;  1H6H A;  2RAI A;  2IWL X;  4PQO A;  1GD5 A;  1O7K A;  1XTE A;  2DYB A;  2V14 A;  2RAJ A;  2RED A;  3P0C A;  1KQ6 A;  1KMD A;  2L73 A;  2RAK A;  4IKB B;  4P2J A;  4IKB A;  2CSK A;  4ON3 A;  2I4K A;  4PQP A;  1XTN A;  1OCU A;  3HPB A;  3IQ2 A;  2AR5 A;  4PZG A;  1OCS A;  3LUI A;  4HAS A;  2V6V A;  2ETT A;  2YPS A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4PZGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations