The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
79
|
sequence length |
249
|
structure length |
228
|
Chain Sequence |
DFPQHSQHVLEQLNQQRQLGLLCDCTFVGVHFKAHKAVLAACSEYFKMLFVDQNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAGTADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structures of heterodimeric POZ domains of Miz1/BCL6 and Miz1/NAC1.
pubmed doi rcsb |
| molecule keywords |
Zinc finger and BTB domain-containing protein 17,B-cell lymp
|
| molecule tags |
Transcription
|
| source organism |
Homo sapiens
|
| total genus |
79
|
| structure length |
228
|
| sequence length |
249
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2014-07-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00651 | BTB | BTB/POZ domain |
| A | PF00651 | BTB | BTB/POZ domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1; Chain A | Potassium Channel Kv1.1; Chain A | ||
| Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1; Chain A | Potassium Channel Kv1.1; Chain A |
#chains in the Genus database with same CATH superfamily 5A6R A; 4JTC B; 3HTM A; 2OVR A; 3M8V A; 4UYI A; 4W9D B; 3WSO B; 2IZV C; 1EOF A; 4W9E B; 3C6O A; 4BGC A; 4EOZ A; 3LNM B; 4AP2 A; 4BKT B; 3C6P A; 2OVQ A; 2MA9 C; 5BXH A; 3ZRC B; 3OGM A; 5H7H A; 3ZRF B; 2AST A; 3M5B A; 2P1P A; 4CP3 A; 4WQO C; 2I2R A; 3DCG B; 3DRZ A; 3GA1 A; 3V7D A; 5JH5 B; 5LLI B; 2P1N A; 2C9W C; 4U2N A; 4U77 A; 4W9F B; 3L2O A; 1FS2 B; 4W9H H; 4APF A; 5FTA A; 2PPI A; 4CXT A; 2JZ3 C; 2Q81 A; 3ZNG B; 5BXD A; 3LUT B; 3M4T A; 4JTA B; 1FS1 B; 3C6N A; 3ZTC B; 1P22 B; 2R9R B; 1VCB B; 2E31 B; 3FKC A; 4AJY C; 5BXB A; 2Z8H A; 4B9K E; 5IBK A; 4CRH A; 1CS3 A; 1R28 A; 1QDW A; 4CXJ A; 4BKS B; 1HV2 A; 3OHV A; 2YY9 A; 4ZOU A; 4B95 B; 4W9G B; 3HVE B; 4W9I B; 5HYW B; 3OHU A; 1LM8 C; 1NEX A; 2IF5 A; 5BO4 C; 3MKS A; 3HU6 A; 4JTD B; 1LQB B; 1BUO A; 1EOD A; 4W9K B; 4W9L B; 5H7G A; 4W9H B; 2FNJ C; 2NN2 A; 2A79 B; 1S1G A; 5A15 A; 3B84 A; 2OVP A; 4I6J C; 2VPK A; 3BIM A; 3OGL A; 3HQI A; 3E4U A; 4HXI A; 1EXB E; 5HZG C; 4J8Z A; 2VKP A; 5DAD A; 3M52 A; 2P1M A; 4JGH C; 5DAF A; 2ASS A; 3KVT A; 4N9F 5; 1DSX A; 4AWJ B; 1LDK D; 4B9K B; 3I3N A; 1R2B A; 2P1Q A; 2IHC A; 5EUP A; 4W9J B; 3ZTD B; 3LBZ A; 1FQV B; 1R29 A; 2E32 B; 4U2M A; 4UIJ A; 1NN7 A; 3HVE A; 1T1D A; 3ZKJ B; 1QDV A; 3OGK A; 3ZUN B; 2P1O A; 1A68 A; 2NZ0 B; 4W9C B; 4CXI A; 1EOE A; #chains in the Genus database with same CATH topology 5A6R A; 4JTC B; 3HTM A; 2OVR A; 3M8V A; 4UYI A; 4W9D B; 3WSO B; 2IZV C; 1EOF A; 4W9E B; 3C6O A; 4BGC A; 4EOZ A; 3LNM B; 4AP2 A; 4BKT B; 3C6P A; 4YY8 A; 2OVQ A; 2MA9 C; 5BXH A; 3ZRC B; 3OGM A; 5H7H A; 3ZRF B; 2AST A; 3M5B A; 2P1P A; 4CP3 A; 4WQO C; 2I2R A; 3DCG B; 3DRZ A; 3GA1 A; 3V7D A; 5JH5 B; 5LLI B; 2P1N A; 2C9W C; 4U2N A; 4U77 A; 4W9F B; 3L2O A; 1FS2 B; 4W9H H; 4APF A; 5FTA A; 2PPI A; 4CXT A; 2JZ3 C; 2Q81 A; 3ZNG B; 5BXD A; 3LUT B; 3M4T A; 4JTA B; 1FS1 B; 3C6N A; 3ZTC B; 1P22 B; 2R9R B; 1VCB B; 2E31 B; 3FKC A; 4AJY C; 5BXB A; 2Z8H A; 4B9K E; 5IBK A; 4CRH A; 3DRY A; 1CS3 A; 1R28 A; 1QDW A; 4CXJ A; 4BKS B; 1HV2 A; 3OHV A; 2YY9 A; 4ZOU A; 4B95 B; 4W9G B; 3HVE B; 4W9I B; 5HYW B; 3OHU A; 1LM8 C; 1NEX A; 2IF5 A; 5BO4 C; 3MKS A; 3HU6 A; 4JTD B; 1LQB B; 1BUO A; 1EOD A; 4W9K B; 4W9L B; 5H7G A; 4W9H B; 2FNJ C; 2NN2 A; 2A79 B; 1S1G A; 5A15 A; 3B84 A; 4ZGC A; 2OVP A; 4I6J C; 2VPK A; 3BIM A; 3OGL A; 3HQI A; 3E4U A; 4HXI A; 1EXB E; 5HZG C; 4J8Z A; 2VKP A; 5DAD A; 3M52 A; 2P1M A; 4JGH C; 5DAF A; 2ASS A; 3KVT A; 4N9F 5; 1DSX A; 4AWJ B; 1LDK D; 4B9K B; 3I3N A; 1R2B A; 2P1Q A; 2IHC A; 5EUP A; 4W9J B; 3ZTD B; 3LBZ A; 1FQV B; 1R29 A; 2E32 B; 4U2M A; 4UIJ A; 1NN7 A; 3HVE A; 1T1D A; 3ZKJ B; 1QDV A; 3DRX A; 3OGK A; 3ZUN B; 2P1O A; 1A68 A; 2NZ0 B; 4W9C B; 4CXI A; 1EOE A; #chains in the Genus database with same CATH homology 5A6R A; 4JTC B; 3HTM A; 2OVR A; 3M8V A; 4UYI A; 4W9D B; 3WSO B; 2IZV C; 1EOF A; 4W9E B; 3C6O A; 4BGC A; 4EOZ A; 3LNM B; 4AP2 A; 4BKT B; 3C6P A; 4YY8 A; 2OVQ A; 2MA9 C; 5BXH A; 3ZRC B; 3OGM A; 5H7H A; 3ZRF B; 2AST A; 3M5B A; 2P1P A; 4CP3 A; 4WQO C; 2I2R A; 3DCG B; 3DRZ A; 3GA1 A; 3V7D A; 5JH5 B; 5LLI B; 2P1N A; 2C9W C; 4U2N A; 4U77 A; 4W9F B; 3L2O A; 1FS2 B; 4W9H H; 4APF A; 5FTA A; 2PPI A; 4CXT A; 2JZ3 C; 2Q81 A; 3ZNG B; 5BXD A; 3LUT B; 3M4T A; 4JTA B; 1FS1 B; 3C6N A; 3ZTC B; 1P22 B; 2R9R B; 1VCB B; 2E31 B; 3FKC A; 4AJY C; 5BXB A; 2Z8H A; 4B9K E; 5IBK A; 4CRH A; 3DRY A; 1CS3 A; 1R28 A; 1QDW A; 4CXJ A; 4BKS B; 1HV2 A; 3OHV A; 2YY9 A; 4ZOU A; 4B95 B; 4W9G B; 3HVE B; 4W9I B; 5HYW B; 3OHU A; 1LM8 C; 1NEX A; 2IF5 A; 5BO4 C; 3MKS A; 3HU6 A; 4JTD B; 1LQB B; 1BUO A; 1EOD A; 4W9K B; 4W9L B; 5H7G A; 4W9H B; 2FNJ C; 2NN2 A; 2A79 B; 1S1G A; 5A15 A; 3B84 A; 4ZGC A; 2OVP A; 4I6J C; 2VPK A; 3BIM A; 3OGL A; 3HQI A; 3E4U A; 4HXI A; 1EXB E; 5HZG C; 4J8Z A; 2VKP A; 5DAD A; 3M52 A; 2P1M A; 4JGH C; 5DAF A; 2ASS A; 3KVT A; 4N9F 5; 1DSX A; 4AWJ B; 1LDK D; 4B9K B; 3I3N A; 1R2B A; 2P1Q A; 2IHC A; 5EUP A; 4W9J B; 3ZTD B; 3LBZ A; 1FQV B; 1R29 A; 2E32 B; 4U2M A; 4UIJ A; 1NN7 A; 3HVE A; 1T1D A; 3ZKJ B; 1QDV A; 3DRX A; 3OGK A; 3ZUN B; 2P1O A; 1A68 A; 2NZ0 B; 4W9C B; 4CXI A; 1EOE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
