4U2M | Genus

Total Genus 79

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	79
sequence length	249
structure length	228
Chain Sequence	DFPQHSQHVLEQLNQQRQLGLLCDCTFVGVHFKAHKAVLAACSEYFKMLFVDQNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAGTADSCIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKCNLSVINLDPEINPEGFCILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 228 atoms

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228 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Structures of heterodimeric POZ domains of Miz1/BCL6 and Miz1/NAC1. pubmed doi rcsb
molecule keywords	Zinc finger and BTB domain-containing protein 17,B-cell lymp
total genus	79
structure length	228
sequence length	249
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2014-07-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	4u2mA02
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	4u2mA01

2P1OA 3GA1A 4U77A 4APFA 2FNJC 3I3NA 5A15A 1R2BA 3M4TA 1BUOA 2P1MA 3HVEB 5BO4C 3MKSA 4I6JC 3ZNGB 5JH5B 3LNMB 5BXBA 3ZUNB 1P22B 4W9HH 1HV2A 4W9IB 4W9EB 1EXBE 1NN7A 3FKCA 1VCBB 1NEXA 2I2RA 1QDVA 1FQVB 2A79B 3M52A 4U2NA 4W9HB 5A6RA 1FS2B 1EOEA 3ZKJB 3C6PA 2YY9A 4WQOC 1EOFA 3DRZA 2JZ3C 2P1NA 5BXHA 1CS3A 5FTAA 5HYWB 4BKTB 2Z8HA 2IZVC 4W9JB 3M8VA 3ZRFB 5DAFA 2P1QA 2E32B 5H7HA 4W9CB 5H7GA 3ZTCB 3C6NA 2MA9C 4AWJB 1R29A 3C6OA 3LUTB 2VPKA 3ZRCB 2IF5A 5IBKA 1LM8C 1T1DA 2ASSA 3HU6A 4EOZA 3V7DA 2NZ0B 2C9WC 4CXIA 1S1GA 2PPIA 3HQIA 4CP3A 4B9KB 2VKPA 4JTCB 3L2OA 3HVEA 4CRHA 5LLIB 2Q81A 4U2MA 2R9RB 3WSOB 4B95B 4W9FB 1DSXA 1LQBB 1QDWA 5BXDA 3KVTA 2OVPA 4JTAB 4BKSB 4ZOUA 3OGKA 4BGCA 5HZGC 4CXTA 2OVQA 4W9LB 4CXJA 5EUPA 4W9KB 3HTMA 3LBZA 3M5BA 3OHUA 2E31B 3OGMA 4JTDB 3ZTDB 3B84A 4W9DB 2ASTA 4B9KE 4J8ZA 1EODA 1R28A 4AP2A 1A68A 4UYIA 4W9GB 4JGHC 3DCGB 5DADA 4AJYC 2OVRA 1LDKD 3OGLA 4UIJA 2IHCA 2P1PA 3E4UA 3OHVA 4N9F5 2NN2A 3BIMA 1FS1B 4HXIA
chains in the Genus database with same CATH superfamily

2P1OA 3GA1A 4U77A 4APFA 2FNJC 3I3NA 5A15A 1R2BA 3M4TA 1BUOA 2P1MA 3HVEB 5BO4C 3MKSA 4I6JC 3ZNGB 5JH5B 3LNMB 5BXBA 3ZUNB 1P22B 4W9HH 1HV2A 4W9IB 4W9EB 1EXBE 1NN7A 3FKCA 3DRXA 1VCBB 1NEXA 2I2RA 1QDVA 1FQVB 2A79B 3M52A 4U2NA 4W9HB 5A6RA 1FS2B 1EOEA 3ZKJB 3C6PA 2YY9A 4WQOC 1EOFA 3DRZA 2JZ3C 2P1NA 5BXHA 1CS3A 5FTAA 4ZGCA 5HYWB 4BKTB 2Z8HA 2IZVC 4W9JB 3M8VA 3ZRFB 5DAFA 2P1QA 2E32B 5H7HA 4W9CB 5H7GA 3ZTCB 3C6NA 2MA9C 4AWJB 1R29A 3C6OA 3LUTB 2VPKA 3ZRCB 2IF5A 5IBKA 1LM8C 1T1DA 2ASSA 3HU6A 4EOZA 3V7DA 2NZ0B 2C9WC 4CXIA 1S1GA 2PPIA 3HQIA 4CP3A 4B9KB 2VKPA 4JTCB 3L2OA 3HVEA 4CRHA 5LLIB 2Q81A 4U2MA 2R9RB 3WSOB 4B95B 4W9FB 1DSXA 1LQBB 1QDWA 5BXDA 3KVTA 2OVPA 4JTAB 4BKSB 4ZOUA 4YY8A 3OGKA 4BGCA 5HZGC 4CXTA 2OVQA 4W9LB 4CXJA 5EUPA 4W9KB 3HTMA 3LBZA 3M5BA 3OHUA 2E31B 3OGMA 4JTDB 3ZTDB 3B84A 4W9DB 2ASTA 4B9KE 4J8ZA 1EODA 1R28A 4AP2A 1A68A 4UYIA 4W9GB 4JGHC 3DCGB 5DADA 4AJYC 2OVRA 1LDKD 3OGLA 4UIJA 2IHCA 2P1PA 3DRYA 3E4UA 3OHVA 4N9F5 2NN2A 3BIMA 1FS1B 4HXIA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2P1O A;  3GA1 A;  4U77 A;  4APF A;  2FNJ C;  3I3N A;  5A15 A;  1R2B A;  3M4T A;  1BUO A;  2P1M A;  3HVE B;  5BO4 C;  3MKS A;  4I6J C;  3ZNG B;  5JH5 B;  3LNM B;  5BXB A;  3ZUN B;  1P22 B;  4W9H H;  1HV2 A;  4W9I B;  4W9E B;  1EXB E;  1NN7 A;  3FKC A;  1VCB B;  1NEX A;  2I2R A;  1QDV A;  1FQV B;  2A79 B;  3M52 A;  4U2N A;  4W9H B;  5A6R A;  1FS2 B;  1EOE A;  3ZKJ B;  3C6P A;  2YY9 A;  4WQO C;  1EOF A;  3DRZ A;  2JZ3 C;  2P1N A;  5BXH A;  1CS3 A;  5FTA A;  5HYW B;  4BKT B;  2Z8H A;  2IZV C;  4W9J B;  3M8V A;  3ZRF B;  5DAF A;  2P1Q A;  2E32 B;  5H7H A;  4W9C B;  5H7G A;  3ZTC B;  3C6N A;  2MA9 C;  4AWJ B;  1R29 A;  3C6O A;  3LUT B;  2VPK A;  3ZRC B;  2IF5 A;  5IBK A;  1LM8 C;  1T1D A;  2ASS A;  3HU6 A;  4EOZ A;  3V7D A;  2NZ0 B;  2C9W C;  4CXI A;  1S1G A;  2PPI A;  3HQI A;  4CP3 A;  4B9K B;  2VKP A;  4JTC B;  3L2O A;  3HVE A;  4CRH A;  5LLI B;  2Q81 A;  4U2M A;  2R9R B;  3WSO B;  4B95 B;  4W9F B;  1DSX A;  1LQB B;  1QDW A;  5BXD A;  3KVT A;  2OVP A;  4JTA B;  4BKS B;  4ZOU A;  3OGK A;  4BGC A;  5HZG C;  4CXT A;  2OVQ A;  4W9L B;  4CXJ A;  5EUP A;  4W9K B;  3HTM A;  3LBZ A;  3M5B A;  3OHU A;  2E31 B;  3OGM A;  4JTD B;  3ZTD B;  3B84 A;  4W9D B;  2AST A;  4B9K E;  4J8Z A;  1EOD A;  1R28 A;  4AP2 A;  1A68 A;  4UYI A;  4W9G B;  4JGH C;  3DCG B;  5DAD A;  4AJY C;  2OVR A;  1LDK D;  3OGL A;  4UIJ A;  2IHC A;  2P1P A;  3E4U A;  3OHV A;  4N9F 5;  2NN2 A;  3BIM A;  1FS1 B;  4HXI A; 
#chains in the Genus database with same CATH topology
 2P1O A;  3GA1 A;  4U77 A;  4APF A;  2FNJ C;  3I3N A;  5A15 A;  1R2B A;  3M4T A;  1BUO A;  2P1M A;  3HVE B;  5BO4 C;  3MKS A;  4I6J C;  3ZNG B;  5JH5 B;  3LNM B;  5BXB A;  3ZUN B;  1P22 B;  4W9H H;  1HV2 A;  4W9I B;  4W9E B;  1EXB E;  1NN7 A;  3FKC A;  3DRX A;  1VCB B;  1NEX A;  2I2R A;  1QDV A;  1FQV B;  2A79 B;  3M52 A;  4U2N A;  4W9H B;  5A6R A;  1FS2 B;  1EOE A;  3ZKJ B;  3C6P A;  2YY9 A;  4WQO C;  1EOF A;  3DRZ A;  2JZ3 C;  2P1N A;  5BXH A;  1CS3 A;  5FTA A;  4ZGC A;  5HYW B;  4BKT B;  2Z8H A;  2IZV C;  4W9J B;  3M8V A;  3ZRF B;  5DAF A;  2P1Q A;  2E32 B;  5H7H A;  4W9C B;  5H7G A;  3ZTC B;  3C6N A;  2MA9 C;  4AWJ B;  1R29 A;  3C6O A;  3LUT B;  2VPK A;  3ZRC B;  2IF5 A;  5IBK A;  1LM8 C;  1T1D A;  2ASS A;  3HU6 A;  4EOZ A;  3V7D A;  2NZ0 B;  2C9W C;  4CXI A;  1S1G A;  2PPI A;  3HQI A;  4CP3 A;  4B9K B;  2VKP A;  4JTC B;  3L2O A;  3HVE A;  4CRH A;  5LLI B;  2Q81 A;  4U2M A;  2R9R B;  3WSO B;  4B95 B;  4W9F B;  1DSX A;  1LQB B;  1QDW A;  5BXD A;  3KVT A;  2OVP A;  4JTA B;  4BKS B;  4ZOU A;  4YY8 A;  3OGK A;  4BGC A;  5HZG C;  4CXT A;  2OVQ A;  4W9L B;  4CXJ A;  5EUP A;  4W9K B;  3HTM A;  3LBZ A;  3M5B A;  3OHU A;  2E31 B;  3OGM A;  4JTD B;  3ZTD B;  3B84 A;  4W9D B;  2AST A;  4B9K E;  4J8Z A;  1EOD A;  1R28 A;  4AP2 A;  1A68 A;  4UYI A;  4W9G B;  4JGH C;  3DCG B;  5DAD A;  4AJY C;  2OVR A;  1LDK D;  3OGL A;  4UIJ A;  2IHC A;  2P1P A;  3DRY A;  3E4U A;  3OHV A;  4N9F 5;  2NN2 A;  3BIM A;  1FS1 B;  4HXI A; 
#chains in the Genus database with same CATH homology
 2P1O A;  3GA1 A;  4U77 A;  4APF A;  2FNJ C;  3I3N A;  5A15 A;  1R2B A;  3M4T A;  1BUO A;  2P1M A;  3HVE B;  5BO4 C;  3MKS A;  4I6J C;  3ZNG B;  5JH5 B;  3LNM B;  5BXB A;  3ZUN B;  1P22 B;  4W9H H;  1HV2 A;  4W9I B;  4W9E B;  1EXB E;  1NN7 A;  3FKC A;  3DRX A;  1VCB B;  1NEX A;  2I2R A;  1QDV A;  1FQV B;  2A79 B;  3M52 A;  4U2N A;  4W9H B;  5A6R A;  1FS2 B;  1EOE A;  3ZKJ B;  3C6P A;  2YY9 A;  4WQO C;  1EOF A;  3DRZ A;  2JZ3 C;  2P1N A;  5BXH A;  1CS3 A;  5FTA A;  4ZGC A;  5HYW B;  4BKT B;  2Z8H A;  2IZV C;  4W9J B;  3M8V A;  3ZRF B;  5DAF A;  2P1Q A;  2E32 B;  5H7H A;  4W9C B;  5H7G A;  3ZTC B;  3C6N A;  2MA9 C;  4AWJ B;  1R29 A;  3C6O A;  3LUT B;  2VPK A;  3ZRC B;  2IF5 A;  5IBK A;  1LM8 C;  1T1D A;  2ASS A;  3HU6 A;  4EOZ A;  3V7D A;  2NZ0 B;  2C9W C;  4CXI A;  1S1G A;  2PPI A;  3HQI A;  4CP3 A;  4B9K B;  2VKP A;  4JTC B;  3L2O A;  3HVE A;  4CRH A;  5LLI B;  2Q81 A;  4U2M A;  2R9R B;  3WSO B;  4B95 B;  4W9F B;  1DSX A;  1LQB B;  1QDW A;  5BXD A;  3KVT A;  2OVP A;  4JTA B;  4BKS B;  4ZOU A;  4YY8 A;  3OGK A;  4BGC A;  5HZG C;  4CXT A;  2OVQ A;  4W9L B;  4CXJ A;  5EUP A;  4W9K B;  3HTM A;  3LBZ A;  3M5B A;  3OHU A;  2E31 B;  3OGM A;  4JTD B;  3ZTD B;  3B84 A;  4W9D B;  2AST A;  4B9K E;  4J8Z A;  1EOD A;  1R28 A;  4AP2 A;  1A68 A;  4UYI A;  4W9G B;  4JGH C;  3DCG B;  5DAD A;  4AJY C;  2OVR A;  1LDK D;  3OGL A;  4UIJ A;  2IHC A;  2P1P A;  3DRY A;  3E4U A;  3OHV A;  4N9F 5;  2NN2 A;  3BIM A;  1FS1 B;  4HXI A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4U2MA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations