4U2N | Genus

Total Genus 70

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	70
sequence length	248
structure length	230
Chain Sequence	SDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKSLAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSDQDLLMYTAGFLQIQEIMEKGTEFFLK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 230 atoms

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230 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Homo sapiens
publication title	Structures of heterodimeric POZ domains of Miz1/BCL6 and Miz1/NAC1. pubmed doi rcsb
molecule keywords	Zinc finger and BTB domain-containing protein 17,Nucleus acc
total genus	70
structure length	230
sequence length	248
chains with identical sequence	B
ec nomenclature
pdb deposition date	2014-07-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	4u2nA02
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	4u2nA01

3WSOB 3DRZA 2R9RB 1EOEA 1HV2A 5H7HA 5A15A 5H7GA 2Q81A 4AWJB 1NEXA 3HVEA 3OGKA 4J8ZA 3ZTDB 1R29A 1NN7A 4W9HH 2C9WC 2E32B 4BGCA 2P1PA 4AJYC 4CXJA 4CRHA 1EXBE 2Z8HA 5DADA 3GA1A 2OVPA 4EOZA 4W9HB 3HTMA 4CXTA 3ZRFB 4CP3A 3B84A 4N9F5 3DCGB 5EUPA 1DSXA 4W9KB 1FS2B 2OVRA 4JTCB 2FNJC 1EODA 1A68A 2E31B 5HZGC 2IHCA 5BXHA 2P1QA 2VPKA 4HXIA 4WQOC 3M4TA 4AP2A 4B9KB 5BO4C 3OHVA 4BKSB 5A6RA 4W9IB 2A79B 1P22B 4U77A 2MA9C 3FKCA 5FTAA 2PPIA 2VKPA 5BXBA 2JZ3C 1R2BA 1R28A 1FS1B 3MKSA 4W9GB 1CS3A 2NN2A 4B9KE 3I3NA 3OGMA 4UYIA 3ZTCB 2I2RA 5DAFA 3HU6A 4B95B 2P1NA 4W9JB 2NZ0B 2P1MA 4JTDB 4JTAB 5HYWB 3M8VA 1S1GA 3L2OA 2ASTA 4W9FB 1QDWA 1LM8C 3C6PA 4BKTB 3ZKJB 3C6OA 4APFA 4CXIA 1EOFA 3HVEB 3ZRCB 1LDKD 3C6NA 3LBZA 2ASSA 5LLIB 3E4UA 1FQVB 2IZVC 3LUTB 4I6JC 4W9LB 3HQIA 4W9EB 1QDVA 3OHUA 2P1OA 5JH5B 3ZNGB 2YY9A 4ZOUA 5BXDA 4W9DB 1BUOA 3V7DA 4JGHC 3LNMB 4U2NA 3KVTA 5IBKA 4W9CB 3M52A 1VCBB 1LQBB 2IF5A 3ZUNB 4U2MA 3M5BA 3OGLA 2OVQA 4UIJA 1T1DA 3BIMA
chains in the Genus database with same CATH superfamily

3WSOB 3DRZA 2R9RB 1EOEA 1HV2A 5H7HA 5A15A 5H7GA 2Q81A 4AWJB 1NEXA 3HVEA 3OGKA 4J8ZA 3ZTDB 3DRXA 1R29A 1NN7A 4W9HH 2C9WC 2E32B 4BGCA 2P1PA 4AJYC 4CXJA 4CRHA 1EXBE 2Z8HA 5DADA 3GA1A 2OVPA 4EOZA 4W9HB 3HTMA 4CXTA 3ZRFB 4CP3A 3B84A 4N9F5 3DCGB 5EUPA 1DSXA 4W9KB 1FS2B 2OVRA 4JTCB 2FNJC 1EODA 1A68A 2E31B 5HZGC 2IHCA 5BXHA 2P1QA 2VPKA 3DRYA 4HXIA 3M4TA 4WQOC 4AP2A 4B9KB 5BO4C 3OHVA 4BKSB 5A6RA 4W9IB 2A79B 1P22B 4U77A 2MA9C 3FKCA 5FTAA 2PPIA 2VKPA 5BXBA 2JZ3C 1R2BA 1R28A 1FS1B 3MKSA 4W9GB 1CS3A 2NN2A 4B9KE 3I3NA 3OGMA 4UYIA 3ZTCB 2I2RA 5DAFA 3HU6A 4B95B 2P1NA 4W9JB 2NZ0B 2P1MA 4JTDB 4JTAB 5HYWB 3M8VA 1S1GA 3L2OA 2ASTA 4W9FB 1QDWA 1LM8C 3C6PA 4YY8A 4BKTB 3ZKJB 3C6OA 4APFA 4CXIA 1EOFA 3HVEB 3ZRCB 1LDKD 3C6NA 3LBZA 2ASSA 5LLIB 3E4UA 1FQVB 2IZVC 3LUTB 4I6JC 4W9LB 3HQIA 4W9EB 1QDVA 3OHUA 2P1OA 4ZGCA 5JH5B 3ZNGB 2YY9A 4ZOUA 5BXDA 4W9DB 1BUOA 3V7DA 4JGHC 3LNMB 4U2NA 3KVTA 5IBKA 4W9CB 3M52A 1VCBB 1LQBB 2IF5A 3ZUNB 4U2MA 3M5BA 3OGLA 2OVQA 4UIJA 1T1DA 3BIMA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3WSO B;  3DRZ A;  2R9R B;  1EOE A;  1HV2 A;  5H7H A;  5A15 A;  5H7G A;  2Q81 A;  4AWJ B;  1NEX A;  3HVE A;  3OGK A;  4J8Z A;  3ZTD B;  1R29 A;  1NN7 A;  4W9H H;  2C9W C;  2E32 B;  4BGC A;  2P1P A;  4AJY C;  4CXJ A;  4CRH A;  1EXB E;  2Z8H A;  5DAD A;  3GA1 A;  2OVP A;  4EOZ A;  4W9H B;  3HTM A;  4CXT A;  3ZRF B;  4CP3 A;  3B84 A;  4N9F 5;  3DCG B;  5EUP A;  1DSX A;  4W9K B;  1FS2 B;  2OVR A;  4JTC B;  2FNJ C;  1EOD A;  1A68 A;  2E31 B;  5HZG C;  2IHC A;  5BXH A;  2P1Q A;  2VPK A;  4HXI A;  4WQO C;  3M4T A;  4AP2 A;  4B9K B;  5BO4 C;  3OHV A;  4BKS B;  5A6R A;  4W9I B;  2A79 B;  1P22 B;  4U77 A;  2MA9 C;  3FKC A;  5FTA A;  2PPI A;  2VKP A;  5BXB A;  2JZ3 C;  1R2B A;  1R28 A;  1FS1 B;  3MKS A;  4W9G B;  1CS3 A;  2NN2 A;  4B9K E;  3I3N A;  3OGM A;  4UYI A;  3ZTC B;  2I2R A;  5DAF A;  3HU6 A;  4B95 B;  2P1N A;  4W9J B;  2NZ0 B;  2P1M A;  4JTD B;  4JTA B;  5HYW B;  3M8V A;  1S1G A;  3L2O A;  2AST A;  4W9F B;  1QDW A;  1LM8 C;  3C6P A;  4BKT B;  3ZKJ B;  3C6O A;  4APF A;  4CXI A;  1EOF A;  3HVE B;  3ZRC B;  1LDK D;  3C6N A;  3LBZ A;  2ASS A;  5LLI B;  3E4U A;  1FQV B;  2IZV C;  3LUT B;  4I6J C;  4W9L B;  3HQI A;  4W9E B;  1QDV A;  3OHU A;  2P1O A;  5JH5 B;  3ZNG B;  2YY9 A;  4ZOU A;  5BXD A;  4W9D B;  1BUO A;  3V7D A;  4JGH C;  3LNM B;  4U2N A;  3KVT A;  5IBK A;  4W9C B;  3M52 A;  1VCB B;  1LQB B;  2IF5 A;  3ZUN B;  4U2M A;  3M5B A;  3OGL A;  2OVQ A;  4UIJ A;  1T1D A;  3BIM A; 
#chains in the Genus database with same CATH topology
 3WSO B;  3DRZ A;  2R9R B;  1EOE A;  1HV2 A;  5H7H A;  5A15 A;  5H7G A;  2Q81 A;  4AWJ B;  1NEX A;  3HVE A;  3OGK A;  4J8Z A;  3ZTD B;  3DRX A;  1R29 A;  1NN7 A;  4W9H H;  2C9W C;  2E32 B;  4BGC A;  2P1P A;  4AJY C;  4CXJ A;  4CRH A;  1EXB E;  2Z8H A;  5DAD A;  3GA1 A;  2OVP A;  4EOZ A;  4W9H B;  3HTM A;  4CXT A;  3ZRF B;  4CP3 A;  3B84 A;  4N9F 5;  3DCG B;  5EUP A;  1DSX A;  4W9K B;  1FS2 B;  2OVR A;  4JTC B;  2FNJ C;  1EOD A;  1A68 A;  2E31 B;  5HZG C;  2IHC A;  5BXH A;  2P1Q A;  2VPK A;  3DRY A;  4HXI A;  3M4T A;  4WQO C;  4AP2 A;  4B9K B;  5BO4 C;  3OHV A;  4BKS B;  5A6R A;  4W9I B;  2A79 B;  1P22 B;  4U77 A;  2MA9 C;  3FKC A;  5FTA A;  2PPI A;  2VKP A;  5BXB A;  2JZ3 C;  1R2B A;  1R28 A;  1FS1 B;  3MKS A;  4W9G B;  1CS3 A;  2NN2 A;  4B9K E;  3I3N A;  3OGM A;  4UYI A;  3ZTC B;  2I2R A;  5DAF A;  3HU6 A;  4B95 B;  2P1N A;  4W9J B;  2NZ0 B;  2P1M A;  4JTD B;  4JTA B;  5HYW B;  3M8V A;  1S1G A;  3L2O A;  2AST A;  4W9F B;  1QDW A;  1LM8 C;  3C6P A;  4YY8 A;  4BKT B;  3ZKJ B;  3C6O A;  4APF A;  4CXI A;  1EOF A;  3HVE B;  3ZRC B;  1LDK D;  3C6N A;  3LBZ A;  2ASS A;  5LLI B;  3E4U A;  1FQV B;  2IZV C;  3LUT B;  4I6J C;  4W9L B;  3HQI A;  4W9E B;  1QDV A;  3OHU A;  2P1O A;  4ZGC A;  5JH5 B;  3ZNG B;  2YY9 A;  4ZOU A;  5BXD A;  4W9D B;  1BUO A;  3V7D A;  4JGH C;  3LNM B;  4U2N A;  3KVT A;  5IBK A;  4W9C B;  3M52 A;  1VCB B;  1LQB B;  2IF5 A;  3ZUN B;  4U2M A;  3M5B A;  3OGL A;  2OVQ A;  4UIJ A;  1T1D A;  3BIM A; 
#chains in the Genus database with same CATH homology
 3WSO B;  3DRZ A;  2R9R B;  1EOE A;  1HV2 A;  5H7H A;  5A15 A;  5H7G A;  2Q81 A;  4AWJ B;  1NEX A;  3HVE A;  3OGK A;  4J8Z A;  3ZTD B;  3DRX A;  1R29 A;  1NN7 A;  4W9H H;  2C9W C;  2E32 B;  4BGC A;  2P1P A;  4AJY C;  4CXJ A;  4CRH A;  1EXB E;  2Z8H A;  5DAD A;  3GA1 A;  2OVP A;  4EOZ A;  4W9H B;  3HTM A;  4CXT A;  3ZRF B;  4CP3 A;  3B84 A;  4N9F 5;  3DCG B;  5EUP A;  1DSX A;  4W9K B;  1FS2 B;  2OVR A;  4JTC B;  2FNJ C;  1EOD A;  1A68 A;  2E31 B;  5HZG C;  2IHC A;  5BXH A;  2P1Q A;  2VPK A;  3DRY A;  4HXI A;  3M4T A;  4WQO C;  4AP2 A;  4B9K B;  5BO4 C;  3OHV A;  4BKS B;  5A6R A;  4W9I B;  2A79 B;  1P22 B;  4U77 A;  2MA9 C;  3FKC A;  5FTA A;  2PPI A;  2VKP A;  5BXB A;  2JZ3 C;  1R2B A;  1R28 A;  1FS1 B;  3MKS A;  4W9G B;  1CS3 A;  2NN2 A;  4B9K E;  3I3N A;  3OGM A;  4UYI A;  3ZTC B;  2I2R A;  5DAF A;  3HU6 A;  4B95 B;  2P1N A;  4W9J B;  2NZ0 B;  2P1M A;  4JTD B;  4JTA B;  5HYW B;  3M8V A;  1S1G A;  3L2O A;  2AST A;  4W9F B;  1QDW A;  1LM8 C;  3C6P A;  4YY8 A;  4BKT B;  3ZKJ B;  3C6O A;  4APF A;  4CXI A;  1EOF A;  3HVE B;  3ZRC B;  1LDK D;  3C6N A;  3LBZ A;  2ASS A;  5LLI B;  3E4U A;  1FQV B;  2IZV C;  3LUT B;  4I6J C;  4W9L B;  3HQI A;  4W9E B;  1QDV A;  3OHU A;  2P1O A;  4ZGC A;  5JH5 B;  3ZNG B;  2YY9 A;  4ZOU A;  5BXD A;  4W9D B;  1BUO A;  3V7D A;  4JGH C;  3LNM B;  4U2N A;  3KVT A;  5IBK A;  4W9C B;  3M52 A;  1VCB B;  1LQB B;  2IF5 A;  3ZUN B;  4U2M A;  3M5B A;  3OGL A;  2OVQ A;  4UIJ A;  1T1D A;  3BIM A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4U2NA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations