4U77 | Genus

Total Genus 34

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	121
structure length	121
Chain Sequence	GEVKSVKVDNWGVFFLQKLQNFFNKTDYCDLTLQFRDNSQLKVHRLVLSACTDYFNVLEQTCEIVDDALIMPNEFQADVVVPIVNFMYTGTLEFELKMYGKLLRTAKEMNMTVLLKLLEAH

Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__033569832006298__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__033569832006298__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/4U77/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__033569832006298__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"033569832006298","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/4U77/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__033569832006298__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transcription
source organism	Drosophila melanogaster
publication title	Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome. pubmed doi rcsb
molecule keywords	Centrosome-associated zinc finger protein CP190
total genus	34
structure length	121
sequence length	121
ec nomenclature
pdb deposition date	2014-07-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	4u77A00

2Q81A 4W9JB 3I3NA 2PPIA 1NEXA 3LNMB 1DSXA 3V7DA 3C6OA 3ZRCB 4AP2A 2JZ3C 2NN2A 1R2BA 1BUOA 2ASTA 1NN7A 4W9EB 5H7GA 3HTMA 3M4TA 4CXTA 3OGKA 2VPKA 2A79B 4HXIA 4JTAB 4W9HB 3M8VA 3BIMA 4W9DB 4CP3A 1R28A 4B9KB 3HVEA 1FS1B 4W9CB 5A15A 3WSOB 5FTAA 4I6JC 3OHVA 5DADA 3M52A 2P1MA 1FS2B 1T1DA 3OGMA 3FKCA 4BGCA 2P1QA 4AJYC 4EOZA 5IBKA 2MA9C 5BXBA 4APFA 1VCBB 5DAFA 5JH5B 5BXDA 1LQBB 3L2OA 3LBZA 4JTCB 3M5BA 3ZRFB 5BXHA 5EUPA 3HQIA 3KVTA 1EOFA 3HU6A 2I2RA 2NZ0B 1EODA 2E32B 1R29A 2P1NA 4W9LB 1S1GA 2Z8HA 2IZVC 4W9IB 1EOEA 1CS3A 2C9WC 4AWJB 4JGHC 1QDVA 2R9RB 4J8ZA 1LM8C 3DRZA 5LLIB 2OVPA 2ASSA 3OGLA 1A68A 3C6PA 4UIJA 5HZGC 3LUTB 4CXJA 3OHUA 4U2NA 4W9GB 3DCGB 4BKTB 4N9F5 2OVRA 5H7HA 3ZNGB 4JTDB 4B95B 3ZTCB 1FQVB 4W9FB 4B9KE 4U77A 2OVQA 5A6RA 1EXBE 4UYIA 4W9KB 1HV2A 4BKSB 4ZOUA 3B84A 5HYWB 2P1PA 2FNJC 2E31B 3ZTDB 1QDWA 2YY9A 2IHCA 3C6NA 1LDKD 4W9HH 2IF5A 3HVEB 3E4UA 5BO4C 2P1OA 3ZUNB 4CRHA 4CXIA 3ZKJB 1P22B 3MKSA 4WQOC 3GA1A 4U2MA 2VKPA
chains in the Genus database with same CATH superfamily

2Q81A 4W9JB 3I3NA 2PPIA 1NEXA 3LNMB 1DSXA 3V7DA 3C6OA 3ZRCB 4AP2A 2JZ3C 2NN2A 1R2BA 1BUOA 2ASTA 1NN7A 4W9EB 5H7GA 3HTMA 3M4TA 4CXTA 3OGKA 2VPKA 2A79B 4HXIA 4JTAB 4W9HB 3M8VA 3BIMA 4W9DB 4CP3A 1R28A 4B9KB 3HVEA 1FS1B 4W9CB 5A15A 3WSOB 5FTAA 4I6JC 3OHVA 5DADA 3M52A 2P1MA 1FS2B 1T1DA 3OGMA 3FKCA 4BGCA 2P1QA 4AJYC 4EOZA 5IBKA 2MA9C 5BXBA 4APFA 1VCBB 5DAFA 5JH5B 5BXDA 1LQBB 3L2OA 3LBZA 4JTCB 3M5BA 3ZRFB 5BXHA 5EUPA 3HQIA 3KVTA 1EOFA 3HU6A 2I2RA 2NZ0B 1EODA 2E32B 1R29A 2P1NA 4W9LB 1S1GA 2Z8HA 2IZVC 4W9IB 1EOEA 1CS3A 2C9WC 4AWJB 4JGHC 1QDVA 2R9RB 4J8ZA 1LM8C 3DRZA 5LLIB 2OVPA 2ASSA 4ZGCA 3OGLA 1A68A 3C6PA 4UIJA 5HZGC 3LUTB 4CXJA 3OHUA 4U2NA 4W9GB 3DCGB 4BKTB 4N9F5 2OVRA 5H7HA 3ZNGB 4JTDB 4B95B 3ZTCB 1FQVB 4W9FB 4B9KE 4U77A 2OVQA 5A6RA 1EXBE 4UYIA 3DRXA 4YY8A 4W9KB 1HV2A 4BKSB 4ZOUA 3B84A 5HYWB 2P1PA 2FNJC 2E31B 3ZTDB 1QDWA 2YY9A 2IHCA 3C6NA 1LDKD 4W9HH 2IF5A 3DRYA 3E4UA 3HVEB 2P1OA 5BO4C 3ZUNB 4CRHA 4CXIA 3ZKJB 1P22B 3MKSA 4WQOC 3GA1A 4U2MA 2VKPA
chains in the Genus database with same CATH topology

2Q81A 4W9JB 3I3NA 2PPIA 1NEXA 3LNMB 1DSXA 3V7DA 3C6OA 3ZRCB 4AP2A 2JZ3C 2NN2A 1R2BA 1BUOA 2ASTA 1NN7A 4W9EB 5H7GA 3HTMA 3M4TA 4CXTA 3OGKA 2VPKA 2A79B 4HXIA 4JTAB 4W9HB 3M8VA 3BIMA 4W9DB 4CP3A 1R28A 4B9KB 3HVEA 1FS1B 4W9CB 5A15A 3WSOB 5FTAA 4I6JC 3OHVA 5DADA 3M52A 2P1MA 1FS2B 1T1DA 3OGMA 3FKCA 4BGCA 2P1QA 4AJYC 4EOZA 5IBKA 2MA9C 5BXBA 4APFA 1VCBB 5DAFA 5JH5B 5BXDA 1LQBB 3L2OA 3LBZA 4JTCB 3M5BA 3ZRFB 5BXHA 5EUPA 3HQIA 3KVTA 1EOFA 3HU6A 2I2RA 2NZ0B 1EODA 2E32B 1R29A 2P1NA 4W9LB 1S1GA 2Z8HA 2IZVC 4W9IB 1EOEA 1CS3A 2C9WC 4AWJB 4JGHC 1QDVA 2R9RB 4J8ZA 1LM8C 3DRZA 5LLIB 2OVPA 2ASSA 4ZGCA 3OGLA 1A68A 3C6PA 4UIJA 5HZGC 3LUTB 4CXJA 3OHUA 4U2NA 4W9GB 3DCGB 4BKTB 4N9F5 2OVRA 5H7HA 3ZNGB 4JTDB 4B95B 3ZTCB 1FQVB 4W9FB 4B9KE 4U77A 2OVQA 5A6RA 1EXBE 4UYIA 3DRXA 4YY8A 4W9KB 1HV2A 4BKSB 4ZOUA 3B84A 5HYWB 2P1PA 2FNJC 2E31B 3ZTDB 1QDWA 2YY9A 2IHCA 3C6NA 1LDKD 4W9HH 2IF5A 3DRYA 3E4UA 3HVEB 2P1OA 5BO4C 3ZUNB 4CRHA 4CXIA 3ZKJB 1P22B 3MKSA 4WQOC 3GA1A 4U2MA 2VKPA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2Q81 A;  4W9J B;  3I3N A;  2PPI A;  1NEX A;  3LNM B;  1DSX A;  3V7D A;  3C6O A;  3ZRC B;  4AP2 A;  2JZ3 C;  2NN2 A;  1R2B A;  1BUO A;  2AST A;  1NN7 A;  4W9E B;  5H7G A;  3HTM A;  3M4T A;  4CXT A;  3OGK A;  2VPK A;  2A79 B;  4HXI A;  4JTA B;  4W9H B;  3M8V A;  3BIM A;  4W9D B;  4CP3 A;  1R28 A;  4B9K B;  3HVE A;  1FS1 B;  4W9C B;  5A15 A;  3WSO B;  5FTA A;  4I6J C;  3OHV A;  5DAD A;  3M52 A;  2P1M A;  1FS2 B;  1T1D A;  3OGM A;  3FKC A;  4BGC A;  2P1Q A;  4AJY C;  4EOZ A;  5IBK A;  2MA9 C;  5BXB A;  4APF A;  1VCB B;  5DAF A;  5JH5 B;  5BXD A;  1LQB B;  3L2O A;  3LBZ A;  4JTC B;  3M5B A;  3ZRF B;  5BXH A;  5EUP A;  3HQI A;  3KVT A;  1EOF A;  3HU6 A;  2I2R A;  2NZ0 B;  1EOD A;  2E32 B;  1R29 A;  2P1N A;  4W9L B;  1S1G A;  2Z8H A;  2IZV C;  4W9I B;  1EOE A;  1CS3 A;  2C9W C;  4AWJ B;  4JGH C;  1QDV A;  2R9R B;  4J8Z A;  1LM8 C;  3DRZ A;  5LLI B;  2OVP A;  2ASS A;  3OGL A;  1A68 A;  3C6P A;  4UIJ A;  5HZG C;  3LUT B;  4CXJ A;  3OHU A;  4U2N A;  4W9G B;  3DCG B;  4BKT B;  4N9F 5;  2OVR A;  5H7H A;  3ZNG B;  4JTD B;  4B95 B;  3ZTC B;  1FQV B;  4W9F B;  4B9K E;  4U77 A;  2OVQ A;  5A6R A;  1EXB E;  4UYI A;  4W9K B;  1HV2 A;  4BKS B;  4ZOU A;  3B84 A;  5HYW B;  2P1P A;  2FNJ C;  2E31 B;  3ZTD B;  1QDW A;  2YY9 A;  2IHC A;  3C6N A;  1LDK D;  4W9H H;  2IF5 A;  3HVE B;  3E4U A;  5BO4 C;  2P1O A;  3ZUN B;  4CRH A;  4CXI A;  3ZKJ B;  1P22 B;  3MKS A;  4WQO C;  3GA1 A;  4U2M A;  2VKP A; 
#chains in the Genus database with same CATH topology
 2Q81 A;  4W9J B;  3I3N A;  2PPI A;  1NEX A;  3LNM B;  1DSX A;  3V7D A;  3C6O A;  3ZRC B;  4AP2 A;  2JZ3 C;  2NN2 A;  1R2B A;  1BUO A;  2AST A;  1NN7 A;  4W9E B;  5H7G A;  3HTM A;  3M4T A;  4CXT A;  3OGK A;  2VPK A;  2A79 B;  4HXI A;  4JTA B;  4W9H B;  3M8V A;  3BIM A;  4W9D B;  4CP3 A;  1R28 A;  4B9K B;  3HVE A;  1FS1 B;  4W9C B;  5A15 A;  3WSO B;  5FTA A;  4I6J C;  3OHV A;  5DAD A;  3M52 A;  2P1M A;  1FS2 B;  1T1D A;  3OGM A;  3FKC A;  4BGC A;  2P1Q A;  4AJY C;  4EOZ A;  5IBK A;  2MA9 C;  5BXB A;  4APF A;  1VCB B;  5DAF A;  5JH5 B;  5BXD A;  1LQB B;  3L2O A;  3LBZ A;  4JTC B;  3M5B A;  3ZRF B;  5BXH A;  5EUP A;  3HQI A;  3KVT A;  1EOF A;  3HU6 A;  2I2R A;  2NZ0 B;  1EOD A;  2E32 B;  1R29 A;  2P1N A;  4W9L B;  1S1G A;  2Z8H A;  2IZV C;  4W9I B;  1EOE A;  1CS3 A;  2C9W C;  4AWJ B;  4JGH C;  1QDV A;  2R9R B;  4J8Z A;  1LM8 C;  3DRZ A;  5LLI B;  2OVP A;  2ASS A;  4ZGC A;  3OGL A;  1A68 A;  3C6P A;  4UIJ A;  5HZG C;  3LUT B;  4CXJ A;  3OHU A;  4U2N A;  4W9G B;  3DCG B;  4BKT B;  4N9F 5;  2OVR A;  5H7H A;  3ZNG B;  4JTD B;  4B95 B;  3ZTC B;  1FQV B;  4W9F B;  4B9K E;  4U77 A;  2OVQ A;  5A6R A;  1EXB E;  4UYI A;  3DRX A;  4YY8 A;  4W9K B;  1HV2 A;  4BKS B;  4ZOU A;  3B84 A;  5HYW B;  2P1P A;  2FNJ C;  2E31 B;  3ZTD B;  1QDW A;  2YY9 A;  2IHC A;  3C6N A;  1LDK D;  4W9H H;  2IF5 A;  3DRY A;  3E4U A;  3HVE B;  2P1O A;  5BO4 C;  3ZUN B;  4CRH A;  4CXI A;  3ZKJ B;  1P22 B;  3MKS A;  4WQO C;  3GA1 A;  4U2M A;  2VKP A; 
#chains in the Genus database with same CATH homology
 2Q81 A;  4W9J B;  3I3N A;  2PPI A;  1NEX A;  3LNM B;  1DSX A;  3V7D A;  3C6O A;  3ZRC B;  4AP2 A;  2JZ3 C;  2NN2 A;  1R2B A;  1BUO A;  2AST A;  1NN7 A;  4W9E B;  5H7G A;  3HTM A;  3M4T A;  4CXT A;  3OGK A;  2VPK A;  2A79 B;  4HXI A;  4JTA B;  4W9H B;  3M8V A;  3BIM A;  4W9D B;  4CP3 A;  1R28 A;  4B9K B;  3HVE A;  1FS1 B;  4W9C B;  5A15 A;  3WSO B;  5FTA A;  4I6J C;  3OHV A;  5DAD A;  3M52 A;  2P1M A;  1FS2 B;  1T1D A;  3OGM A;  3FKC A;  4BGC A;  2P1Q A;  4AJY C;  4EOZ A;  5IBK A;  2MA9 C;  5BXB A;  4APF A;  1VCB B;  5DAF A;  5JH5 B;  5BXD A;  1LQB B;  3L2O A;  3LBZ A;  4JTC B;  3M5B A;  3ZRF B;  5BXH A;  5EUP A;  3HQI A;  3KVT A;  1EOF A;  3HU6 A;  2I2R A;  2NZ0 B;  1EOD A;  2E32 B;  1R29 A;  2P1N A;  4W9L B;  1S1G A;  2Z8H A;  2IZV C;  4W9I B;  1EOE A;  1CS3 A;  2C9W C;  4AWJ B;  4JGH C;  1QDV A;  2R9R B;  4J8Z A;  1LM8 C;  3DRZ A;  5LLI B;  2OVP A;  2ASS A;  4ZGC A;  3OGL A;  1A68 A;  3C6P A;  4UIJ A;  5HZG C;  3LUT B;  4CXJ A;  3OHU A;  4U2N A;  4W9G B;  3DCG B;  4BKT B;  4N9F 5;  2OVR A;  5H7H A;  3ZNG B;  4JTD B;  4B95 B;  3ZTC B;  1FQV B;  4W9F B;  4B9K E;  4U77 A;  2OVQ A;  5A6R A;  1EXB E;  4UYI A;  3DRX A;  4YY8 A;  4W9K B;  1HV2 A;  4BKS B;  4ZOU A;  3B84 A;  5HYW B;  2P1P A;  2FNJ C;  2E31 B;  3ZTD B;  1QDW A;  2YY9 A;  2IHC A;  3C6N A;  1LDK D;  4W9H H;  2IF5 A;  3DRY A;  3E4U A;  3HVE B;  2P1O A;  5BO4 C;  3ZUN B;  4CRH A;  4CXI A;  3ZKJ B;  1P22 B;  3MKS A;  4WQO C;  3GA1 A;  4U2M A;  2VKP A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

4U77A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations