5A15 | Genus

Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	22
sequence length	102
structure length	95
Chain Sequence	FPEVVELNVGGQVYFTRHSTLISIPHSLLWKMFSPLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPEKGRLKREAEYFQLPDLVKLLTP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 95 atoms

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95 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Signaling protein
source organism	Homo sapiens
publication title	Structural complexity in the KCTD family of Cullin3-dependent E3 ubiquitin ligases. pubmed doi rcsb
molecule keywords	BTB/POZ DOMAIN-CONTAINING PROTEIN KCTD16
total genus	22
structure length	95
sequence length	102
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L, M, N, O
ec nomenclature
pdb deposition date	2015-04-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02214	BTB_2	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	5a15A00

2I2RA 2PPIA 4BGCA 4B9KE 5EUPA 3OGMA 5FTAA 1FS2B 5A6RA 3ZTDB 1VCBB 2P1MA 4AWJB 2OVRA 5JH5B 2YY9A 1FQVB 1CS3A 4UYIA 4W9IB 3LBZA 5A15A 2IHCA 1R29A 5DADA 5BXHA 4JTAB 4W9HH 3OHUA 1QDVA 1T1DA 4JGHC 4W9DB 4HXIA 4W9CB 2ASSA 4W9JB 3M52A 4B95B 5BO4C 4I6JC 4AJYC 1NEXA 5HYWB 3I3NA 2P1OA 1DSXA 4W9FB 4CXTA 5IBKA 3HQIA 3BIMA 3E4UA 2A79B 4JTCB 2P1QA 2P1PA 3OGKA 2E32B 3OHVA 1QDWA 1NN7A 3ZRCB 5H7HA 3ZKJB 1HV2A 3M5BA 3C6OA 3M4TA 4N9F5 2ASTA 3ZTCB 2C9WC 2Z8HA 3HVEA 3HVEB 3ZRFB 4BKTB 4J8ZA 2FNJC 3C6PA 4W9LB 2OVQA 3HU6A 3ZUNB 1LDKD 4U2NA 1P22B 4B9KB 4W9GB 2JZ3C 1EOFA 3DRZA 4CXIA 3V7DA 4U77A 5DAFA 4BKSB 1BUOA 3DCGB 3HTMA 2VKPA 2R9RB 2IF5A 5H7GA 4EOZA 5BXBA 2P1NA 5BXDA 3GA1A 4ZOUA 2E31B 4APFA 3B84A 1LM8C 4U2MA 2OVPA 4W9HB 1R2BA 1EXBE 3OGLA 1S1GA 3FKCA 4JTDB 3C6NA 2NN2A 2Q81A 3M8VA 4W9EB 4UIJA 1EOEA 1LQBB 2MA9C 3LUTB 4CP3A 4CRHA 3ZNGB 4AP2A 5LLIB 2IZVC 3L2OA 4W9KB 3MKSA 1EODA 3WSOB 1FS1B 1A68A 2VPKA 3KVTA 1R28A 5HZGC 4CXJA 4WQOC 3LNMB 2NZ0B
chains in the Genus database with same CATH superfamily

2I2RA 2PPIA 4BGCA 4B9KE 5EUPA 3OGMA 5FTAA 1FS2B 5A6RA 3ZTDB 1VCBB 2P1MA 4AWJB 2OVRA 5JH5B 2YY9A 1FQVB 1CS3A 4UYIA 4W9IB 3LBZA 5A15A 2IHCA 1R29A 5DADA 5BXHA 4JTAB 4W9HH 3OHUA 1QDVA 1T1DA 4JGHC 4W9DB 4HXIA 4W9CB 2ASSA 4W9JB 3M52A 4B95B 5BO4C 4I6JC 4AJYC 1NEXA 5HYWB 3I3NA 2P1OA 1DSXA 4W9FB 4CXTA 5IBKA 3HQIA 3BIMA 3E4UA 2A79B 3DRXA 4JTCB 2P1QA 2P1PA 3OGKA 2E32B 3OHVA 1QDWA 1NN7A 3ZRCB 5H7HA 3ZKJB 1HV2A 3M5BA 3C6OA 3M4TA 4N9F5 2ASTA 3ZTCB 4ZGCA 2C9WC 2Z8HA 3HVEA 3HVEB 3ZRFB 4BKTB 4J8ZA 2FNJC 3C6PA 4W9LB 2OVQA 3HU6A 3ZUNB 1LDKD 4U2NA 1P22B 4B9KB 4YY8A 4W9GB 2JZ3C 1EOFA 3DRZA 4CXIA 3V7DA 4U77A 5DAFA 4BKSB 1BUOA 3DCGB 3HTMA 2VKPA 2R9RB 2IF5A 5H7GA 4EOZA 5BXBA 2P1NA 5BXDA 3GA1A 4ZOUA 2E31B 4APFA 3B84A 1LM8C 4U2MA 2OVPA 4W9HB 1R2BA 1EXBE 3OGLA 1S1GA 3FKCA 4JTDB 3C6NA 2NN2A 2Q81A 3M8VA 4W9EB 4UIJA 1EOEA 1LQBB 2MA9C 3DRYA 3LUTB 4CP3A 4CRHA 3ZNGB 4AP2A 5LLIB 2IZVC 3L2OA 4W9KB 3MKSA 1EODA 3WSOB 1FS1B 1A68A 2VPKA 3KVTA 1R28A 5HZGC 4CXJA 4WQOC 3LNMB 2NZ0B
chains in the Genus database with same CATH topology

2I2RA 2PPIA 4BGCA 4B9KE 5EUPA 3OGMA 5FTAA 1FS2B 5A6RA 3ZTDB 1VCBB 2P1MA 4AWJB 2OVRA 5JH5B 2YY9A 1FQVB 1CS3A 4UYIA 4W9IB 3LBZA 5A15A 2IHCA 1R29A 5DADA 5BXHA 4JTAB 4W9HH 3OHUA 1QDVA 1T1DA 4JGHC 4W9DB 4HXIA 4W9CB 2ASSA 4W9JB 3M52A 4B95B 5BO4C 4I6JC 4AJYC 1NEXA 5HYWB 3I3NA 2P1OA 1DSXA 4W9FB 4CXTA 5IBKA 3HQIA 3BIMA 3E4UA 2A79B 3DRXA 4JTCB 2P1QA 2P1PA 3OGKA 2E32B 3OHVA 1QDWA 1NN7A 3ZRCB 5H7HA 3ZKJB 1HV2A 3M5BA 3C6OA 3M4TA 4N9F5 2ASTA 3ZTCB 4ZGCA 2C9WC 2Z8HA 3HVEA 3HVEB 3ZRFB 4BKTB 4J8ZA 2FNJC 3C6PA 4W9LB 2OVQA 3HU6A 3ZUNB 1LDKD 4U2NA 1P22B 4B9KB 4YY8A 4W9GB 2JZ3C 1EOFA 3DRZA 4CXIA 3V7DA 4U77A 5DAFA 4BKSB 1BUOA 3DCGB 3HTMA 2VKPA 2R9RB 2IF5A 5H7GA 4EOZA 5BXBA 2P1NA 5BXDA 3GA1A 4ZOUA 2E31B 4APFA 3B84A 1LM8C 4U2MA 2OVPA 4W9HB 1R2BA 1EXBE 3OGLA 1S1GA 3FKCA 4JTDB 3C6NA 2NN2A 2Q81A 3M8VA 4W9EB 4UIJA 1EOEA 1LQBB 2MA9C 3DRYA 3LUTB 4CP3A 4CRHA 3ZNGB 4AP2A 5LLIB 2IZVC 3L2OA 4W9KB 3MKSA 1EODA 3WSOB 1FS1B 1A68A 2VPKA 3KVTA 1R28A 5HZGC 4CXJA 4WQOC 3LNMB 2NZ0B
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2I2R A;  2PPI A;  4BGC A;  4B9K E;  5EUP A;  3OGM A;  5FTA A;  1FS2 B;  5A6R A;  3ZTD B;  1VCB B;  2P1M A;  4AWJ B;  2OVR A;  5JH5 B;  2YY9 A;  1FQV B;  1CS3 A;  4UYI A;  4W9I B;  3LBZ A;  5A15 A;  2IHC A;  1R29 A;  5DAD A;  5BXH A;  4JTA B;  4W9H H;  3OHU A;  1QDV A;  1T1D A;  4JGH C;  4W9D B;  4HXI A;  4W9C B;  2ASS A;  4W9J B;  3M52 A;  4B95 B;  5BO4 C;  4I6J C;  4AJY C;  1NEX A;  5HYW B;  3I3N A;  2P1O A;  1DSX A;  4W9F B;  4CXT A;  5IBK A;  3HQI A;  3BIM A;  3E4U A;  2A79 B;  4JTC B;  2P1Q A;  2P1P A;  3OGK A;  2E32 B;  3OHV A;  1QDW A;  1NN7 A;  3ZRC B;  5H7H A;  3ZKJ B;  1HV2 A;  3M5B A;  3C6O A;  3M4T A;  4N9F 5;  2AST A;  3ZTC B;  2C9W C;  2Z8H A;  3HVE A;  3HVE B;  3ZRF B;  4BKT B;  4J8Z A;  2FNJ C;  3C6P A;  4W9L B;  2OVQ A;  3HU6 A;  3ZUN B;  1LDK D;  4U2N A;  1P22 B;  4B9K B;  4W9G B;  2JZ3 C;  1EOF A;  3DRZ A;  4CXI A;  3V7D A;  4U77 A;  5DAF A;  4BKS B;  1BUO A;  3DCG B;  3HTM A;  2VKP A;  2R9R B;  2IF5 A;  5H7G A;  4EOZ A;  5BXB A;  2P1N A;  5BXD A;  3GA1 A;  4ZOU A;  2E31 B;  4APF A;  3B84 A;  1LM8 C;  4U2M A;  2OVP A;  4W9H B;  1R2B A;  1EXB E;  3OGL A;  1S1G A;  3FKC A;  4JTD B;  3C6N A;  2NN2 A;  2Q81 A;  3M8V A;  4W9E B;  4UIJ A;  1EOE A;  1LQB B;  2MA9 C;  3LUT B;  4CP3 A;  4CRH A;  3ZNG B;  4AP2 A;  5LLI B;  2IZV C;  3L2O A;  4W9K B;  3MKS A;  1EOD A;  3WSO B;  1FS1 B;  1A68 A;  2VPK A;  3KVT A;  1R28 A;  5HZG C;  4CXJ A;  4WQO C;  3LNM B;  2NZ0 B; 
#chains in the Genus database with same CATH topology
 2I2R A;  2PPI A;  4BGC A;  4B9K E;  5EUP A;  3OGM A;  5FTA A;  1FS2 B;  5A6R A;  3ZTD B;  1VCB B;  2P1M A;  4AWJ B;  2OVR A;  5JH5 B;  2YY9 A;  1FQV B;  1CS3 A;  4UYI A;  4W9I B;  3LBZ A;  5A15 A;  2IHC A;  1R29 A;  5DAD A;  5BXH A;  4JTA B;  4W9H H;  3OHU A;  1QDV A;  1T1D A;  4JGH C;  4W9D B;  4HXI A;  4W9C B;  2ASS A;  4W9J B;  3M52 A;  4B95 B;  5BO4 C;  4I6J C;  4AJY C;  1NEX A;  5HYW B;  3I3N A;  2P1O A;  1DSX A;  4W9F B;  4CXT A;  5IBK A;  3HQI A;  3BIM A;  3E4U A;  2A79 B;  3DRX A;  4JTC B;  2P1Q A;  2P1P A;  3OGK A;  2E32 B;  3OHV A;  1QDW A;  1NN7 A;  3ZRC B;  5H7H A;  3ZKJ B;  1HV2 A;  3M5B A;  3C6O A;  3M4T A;  4N9F 5;  2AST A;  3ZTC B;  4ZGC A;  2C9W C;  2Z8H A;  3HVE A;  3HVE B;  3ZRF B;  4BKT B;  4J8Z A;  2FNJ C;  3C6P A;  4W9L B;  2OVQ A;  3HU6 A;  3ZUN B;  1LDK D;  4U2N A;  1P22 B;  4B9K B;  4YY8 A;  4W9G B;  2JZ3 C;  1EOF A;  3DRZ A;  4CXI A;  3V7D A;  4U77 A;  5DAF A;  4BKS B;  1BUO A;  3DCG B;  3HTM A;  2VKP A;  2R9R B;  2IF5 A;  5H7G A;  4EOZ A;  5BXB A;  2P1N A;  5BXD A;  3GA1 A;  4ZOU A;  2E31 B;  4APF A;  3B84 A;  1LM8 C;  4U2M A;  2OVP A;  4W9H B;  1R2B A;  1EXB E;  3OGL A;  1S1G A;  3FKC A;  4JTD B;  3C6N A;  2NN2 A;  2Q81 A;  3M8V A;  4W9E B;  4UIJ A;  1EOE A;  1LQB B;  2MA9 C;  3DRY A;  3LUT B;  4CP3 A;  4CRH A;  3ZNG B;  4AP2 A;  5LLI B;  2IZV C;  3L2O A;  4W9K B;  3MKS A;  1EOD A;  3WSO B;  1FS1 B;  1A68 A;  2VPK A;  3KVT A;  1R28 A;  5HZG C;  4CXJ A;  4WQO C;  3LNM B;  2NZ0 B; 
#chains in the Genus database with same CATH homology
 2I2R A;  2PPI A;  4BGC A;  4B9K E;  5EUP A;  3OGM A;  5FTA A;  1FS2 B;  5A6R A;  3ZTD B;  1VCB B;  2P1M A;  4AWJ B;  2OVR A;  5JH5 B;  2YY9 A;  1FQV B;  1CS3 A;  4UYI A;  4W9I B;  3LBZ A;  5A15 A;  2IHC A;  1R29 A;  5DAD A;  5BXH A;  4JTA B;  4W9H H;  3OHU A;  1QDV A;  1T1D A;  4JGH C;  4W9D B;  4HXI A;  4W9C B;  2ASS A;  4W9J B;  3M52 A;  4B95 B;  5BO4 C;  4I6J C;  4AJY C;  1NEX A;  5HYW B;  3I3N A;  2P1O A;  1DSX A;  4W9F B;  4CXT A;  5IBK A;  3HQI A;  3BIM A;  3E4U A;  2A79 B;  3DRX A;  4JTC B;  2P1Q A;  2P1P A;  3OGK A;  2E32 B;  3OHV A;  1QDW A;  1NN7 A;  3ZRC B;  5H7H A;  3ZKJ B;  1HV2 A;  3M5B A;  3C6O A;  3M4T A;  4N9F 5;  2AST A;  3ZTC B;  4ZGC A;  2C9W C;  2Z8H A;  3HVE A;  3HVE B;  3ZRF B;  4BKT B;  4J8Z A;  2FNJ C;  3C6P A;  4W9L B;  2OVQ A;  3HU6 A;  3ZUN B;  1LDK D;  4U2N A;  1P22 B;  4B9K B;  4YY8 A;  4W9G B;  2JZ3 C;  1EOF A;  3DRZ A;  4CXI A;  3V7D A;  4U77 A;  5DAF A;  4BKS B;  1BUO A;  3DCG B;  3HTM A;  2VKP A;  2R9R B;  2IF5 A;  5H7G A;  4EOZ A;  5BXB A;  2P1N A;  5BXD A;  3GA1 A;  4ZOU A;  2E31 B;  4APF A;  3B84 A;  1LM8 C;  4U2M A;  2OVP A;  4W9H B;  1R2B A;  1EXB E;  3OGL A;  1S1G A;  3FKC A;  4JTD B;  3C6N A;  2NN2 A;  2Q81 A;  3M8V A;  4W9E B;  4UIJ A;  1EOE A;  1LQB B;  2MA9 C;  3DRY A;  3LUT B;  4CP3 A;  4CRH A;  3ZNG B;  4AP2 A;  5LLI B;  2IZV C;  3L2O A;  4W9K B;  3MKS A;  1EOD A;  3WSO B;  1FS1 B;  1A68 A;  2VPK A;  3KVT A;  1R28 A;  5HZG C;  4CXJ A;  4WQO C;  3LNM B;  2NZ0 B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5A15A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations