5BXB | Genus

Total Genus 31

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	31
sequence length	105
structure length	105
Chain Sequence	ANAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQDRE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 105 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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105 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Homo sapiens
publication title	Structural Insights into KCTD Protein Assembly and Cullin3 Recognition. pubmed doi rcsb
molecule keywords	BTB/POZ domain-containing protein KCTD1
total genus	31
structure length	105
sequence length	105
chains with identical sequence	B, C, D, E, F, G, H, I, J
ec nomenclature
pdb deposition date	2015-06-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02214	BTB_2	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	5bxbA00

4W9GB 3DRZA 2Z8HA 3OGKA 2R9RB 1R2BA 5EUPA 4APFA 4B95B 4W9DB 1FS2B 3ZNGB 3C6PA 1A68A 1BUOA 1S1GA 4U2NA 5H7GA 5IBKA 4N9F5 2VKPA 4W9FB 2MA9C 4BKSB 4BGCA 5JH5B 4W9HH 2A79B 4CXIA 3FKCA 1EXBE 5DAFA 1R28A 4CP3A 3M8VA 3ZUNB 4AWJB 3GA1A 2JZ3C 4JTCB 4EOZA 1EODA 5A15A 1HV2A 3LBZA 3C6NA 2IZVC 5A6RA 4AJYC 2OVQA 3WSOB 5BXBA 2P1QA 4ZOUA 2ASSA 1EOFA 4W9IB 4CXTA 1LDKD 5BXDA 4U77A 4B9KB 4W9HB 2E32B 1P22B 2P1OA 3HU6A 5BO4C 1VCBB 4B9KE 4JGHC 2I2RA 4W9KB 5HYWB 2P1NA 4W9CB 4AP2A 5HZGC 4U2MA 3HVEA 1QDVA 3C6OA 3ZRCB 4W9LB 3HQIA 4HXIA 3ZKJB 3ZTDB 1FQVB 1LQBB 1NEXA 1LM8C 3L2OA 1T1DA 3OHVA 2E31B 4W9EB 2VPKA 5DADA 1EOEA 4JTAB 2FNJC 3HTMA 1QDWA 5H7HA 3ZRFB 3OHUA 2ASTA 2IF5A 2NN2A 4W9JB 3LNMB 3LUTB 3OGLA 1DSXA 1NN7A 2C9WC 2Q81A 4UYIA 3DCGB 4BKTB 4WQOC 1FS1B 4CRHA 3ZTCB 1CS3A 3V7DA 2P1PA 3M5BA 1R29A 2NZ0B 3OGMA 3I3NA 3BIMA 3MKSA 3B84A 4J8ZA 2OVRA 2IHCA 4UIJA 5FTAA 2YY9A 2PPIA 3HVEB 3KVTA 5LLIB 4JTDB 4I6JC 3M52A 5BXHA 2OVPA 2P1MA 4CXJA 3E4UA 3M4TA
chains in the Genus database with same CATH superfamily

4W9GB 3DRZA 2Z8HA 3OGKA 2R9RB 1R2BA 5EUPA 4APFA 4B95B 3DRYA 4W9DB 1FS2B 3ZNGB 3C6PA 1A68A 1BUOA 1S1GA 4U2NA 5H7GA 5IBKA 4N9F5 2VKPA 4W9FB 2MA9C 4BKSB 4BGCA 5JH5B 4W9HH 2A79B 4CXIA 3FKCA 1EXBE 5DAFA 1R28A 4CP3A 3M8VA 3ZUNB 4AWJB 3GA1A 2JZ3C 4JTCB 4EOZA 1EODA 5A15A 1HV2A 3LBZA 3C6NA 2IZVC 5A6RA 4AJYC 2OVQA 3WSOB 5BXBA 2P1QA 4ZOUA 2ASSA 1EOFA 4W9IB 4CXTA 1LDKD 5BXDA 4U77A 4B9KB 4W9HB 2E32B 1P22B 2P1OA 3HU6A 5BO4C 1VCBB 4B9KE 4JGHC 2I2RA 4W9KB 5HYWB 2P1NA 4YY8A 4W9CB 4AP2A 4ZGCA 4U2MA 5HZGC 3HVEA 1QDVA 3C6OA 3ZRCB 4W9LB 3HQIA 4HXIA 3ZKJB 3ZTDB 1FQVB 1LQBB 1NEXA 1LM8C 3L2OA 1T1DA 3OHVA 2E31B 4W9EB 2VPKA 5DADA 1EOEA 4JTAB 2FNJC 3HTMA 1QDWA 5H7HA 3ZRFB 3OHUA 2ASTA 2IF5A 2NN2A 4W9JB 3LNMB 3LUTB 3OGLA 1DSXA 1NN7A 2C9WC 2Q81A 4UYIA 3DCGB 4BKTB 4WQOC 1FS1B 4CRHA 3ZTCB 1CS3A 3V7DA 2P1PA 3M5BA 1R29A 2NZ0B 3OGMA 3I3NA 3BIMA 3MKSA 3B84A 4J8ZA 2OVRA 2IHCA 4UIJA 5FTAA 3DRXA 2YY9A 2PPIA 3HVEB 3KVTA 5LLIB 4JTDB 4I6JC 3M52A 5BXHA 2OVPA 2P1MA 4CXJA 3E4UA 3M4TA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4W9G B;  3DRZ A;  2Z8H A;  3OGK A;  2R9R B;  1R2B A;  5EUP A;  4APF A;  4B95 B;  4W9D B;  1FS2 B;  3ZNG B;  3C6P A;  1A68 A;  1BUO A;  1S1G A;  4U2N A;  5H7G A;  5IBK A;  4N9F 5;  2VKP A;  4W9F B;  2MA9 C;  4BKS B;  4BGC A;  5JH5 B;  4W9H H;  2A79 B;  4CXI A;  3FKC A;  1EXB E;  5DAF A;  1R28 A;  4CP3 A;  3M8V A;  3ZUN B;  4AWJ B;  3GA1 A;  2JZ3 C;  4JTC B;  4EOZ A;  1EOD A;  5A15 A;  1HV2 A;  3LBZ A;  3C6N A;  2IZV C;  5A6R A;  4AJY C;  2OVQ A;  3WSO B;  5BXB A;  2P1Q A;  4ZOU A;  2ASS A;  1EOF A;  4W9I B;  4CXT A;  1LDK D;  5BXD A;  4U77 A;  4B9K B;  4W9H B;  2E32 B;  1P22 B;  2P1O A;  3HU6 A;  5BO4 C;  1VCB B;  4B9K E;  4JGH C;  2I2R A;  4W9K B;  5HYW B;  2P1N A;  4W9C B;  4AP2 A;  5HZG C;  4U2M A;  3HVE A;  1QDV A;  3C6O A;  3ZRC B;  4W9L B;  3HQI A;  4HXI A;  3ZKJ B;  3ZTD B;  1FQV B;  1LQB B;  1NEX A;  1LM8 C;  3L2O A;  1T1D A;  3OHV A;  2E31 B;  4W9E B;  2VPK A;  5DAD A;  1EOE A;  4JTA B;  2FNJ C;  3HTM A;  1QDW A;  5H7H A;  3ZRF B;  3OHU A;  2AST A;  2IF5 A;  2NN2 A;  4W9J B;  3LNM B;  3LUT B;  3OGL A;  1DSX A;  1NN7 A;  2C9W C;  2Q81 A;  4UYI A;  3DCG B;  4BKT B;  4WQO C;  1FS1 B;  4CRH A;  3ZTC B;  1CS3 A;  3V7D A;  2P1P A;  3M5B A;  1R29 A;  2NZ0 B;  3OGM A;  3I3N A;  3BIM A;  3MKS A;  3B84 A;  4J8Z A;  2OVR A;  2IHC A;  4UIJ A;  5FTA A;  2YY9 A;  2PPI A;  3HVE B;  3KVT A;  5LLI B;  4JTD B;  4I6J C;  3M52 A;  5BXH A;  2OVP A;  2P1M A;  4CXJ A;  3E4U A;  3M4T A; 
#chains in the Genus database with same CATH topology
 4W9G B;  3DRZ A;  2Z8H A;  3OGK A;  2R9R B;  1R2B A;  5EUP A;  4APF A;  4B95 B;  3DRY A;  4W9D B;  1FS2 B;  3ZNG B;  3C6P A;  1A68 A;  1BUO A;  1S1G A;  4U2N A;  5H7G A;  5IBK A;  4N9F 5;  2VKP A;  4W9F B;  2MA9 C;  4BKS B;  4BGC A;  5JH5 B;  4W9H H;  2A79 B;  4CXI A;  3FKC A;  1EXB E;  5DAF A;  1R28 A;  4CP3 A;  3M8V A;  3ZUN B;  4AWJ B;  3GA1 A;  2JZ3 C;  4JTC B;  4EOZ A;  1EOD A;  5A15 A;  1HV2 A;  3LBZ A;  3C6N A;  2IZV C;  5A6R A;  4AJY C;  2OVQ A;  3WSO B;  5BXB A;  2P1Q A;  4ZOU A;  2ASS A;  1EOF A;  4W9I B;  4CXT A;  1LDK D;  5BXD A;  4U77 A;  4B9K B;  4W9H B;  2E32 B;  1P22 B;  2P1O A;  3HU6 A;  5BO4 C;  1VCB B;  4B9K E;  4JGH C;  2I2R A;  4W9K B;  5HYW B;  2P1N A;  4YY8 A;  4W9C B;  4AP2 A;  4ZGC A;  4U2M A;  5HZG C;  3HVE A;  1QDV A;  3C6O A;  3ZRC B;  4W9L B;  3HQI A;  4HXI A;  3ZKJ B;  3ZTD B;  1FQV B;  1LQB B;  1NEX A;  1LM8 C;  3L2O A;  1T1D A;  3OHV A;  2E31 B;  4W9E B;  2VPK A;  5DAD A;  1EOE A;  4JTA B;  2FNJ C;  3HTM A;  1QDW A;  5H7H A;  3ZRF B;  3OHU A;  2AST A;  2IF5 A;  2NN2 A;  4W9J B;  3LNM B;  3LUT B;  3OGL A;  1DSX A;  1NN7 A;  2C9W C;  2Q81 A;  4UYI A;  3DCG B;  4BKT B;  4WQO C;  1FS1 B;  4CRH A;  3ZTC B;  1CS3 A;  3V7D A;  2P1P A;  3M5B A;  1R29 A;  2NZ0 B;  3OGM A;  3I3N A;  3BIM A;  3MKS A;  3B84 A;  4J8Z A;  2OVR A;  2IHC A;  4UIJ A;  5FTA A;  3DRX A;  2YY9 A;  2PPI A;  3HVE B;  3KVT A;  5LLI B;  4JTD B;  4I6J C;  3M52 A;  5BXH A;  2OVP A;  2P1M A;  4CXJ A;  3E4U A;  3M4T A; 
#chains in the Genus database with same CATH homology
 4W9G B;  3DRZ A;  2Z8H A;  3OGK A;  2R9R B;  1R2B A;  5EUP A;  4APF A;  4B95 B;  3DRY A;  4W9D B;  1FS2 B;  3ZNG B;  3C6P A;  1A68 A;  1BUO A;  1S1G A;  4U2N A;  5H7G A;  5IBK A;  4N9F 5;  2VKP A;  4W9F B;  2MA9 C;  4BKS B;  4BGC A;  5JH5 B;  4W9H H;  2A79 B;  4CXI A;  3FKC A;  1EXB E;  5DAF A;  1R28 A;  4CP3 A;  3M8V A;  3ZUN B;  4AWJ B;  3GA1 A;  2JZ3 C;  4JTC B;  4EOZ A;  1EOD A;  5A15 A;  1HV2 A;  3LBZ A;  3C6N A;  2IZV C;  5A6R A;  4AJY C;  2OVQ A;  3WSO B;  5BXB A;  2P1Q A;  4ZOU A;  2ASS A;  1EOF A;  4W9I B;  4CXT A;  1LDK D;  5BXD A;  4U77 A;  4B9K B;  4W9H B;  2E32 B;  1P22 B;  2P1O A;  3HU6 A;  5BO4 C;  1VCB B;  4B9K E;  4JGH C;  2I2R A;  4W9K B;  5HYW B;  2P1N A;  4YY8 A;  4W9C B;  4AP2 A;  4ZGC A;  4U2M A;  5HZG C;  3HVE A;  1QDV A;  3C6O A;  3ZRC B;  4W9L B;  3HQI A;  4HXI A;  3ZKJ B;  3ZTD B;  1FQV B;  1LQB B;  1NEX A;  1LM8 C;  3L2O A;  1T1D A;  3OHV A;  2E31 B;  4W9E B;  2VPK A;  5DAD A;  1EOE A;  4JTA B;  2FNJ C;  3HTM A;  1QDW A;  5H7H A;  3ZRF B;  3OHU A;  2AST A;  2IF5 A;  2NN2 A;  4W9J B;  3LNM B;  3LUT B;  3OGL A;  1DSX A;  1NN7 A;  2C9W C;  2Q81 A;  4UYI A;  3DCG B;  4BKT B;  4WQO C;  1FS1 B;  4CRH A;  3ZTC B;  1CS3 A;  3V7D A;  2P1P A;  3M5B A;  1R29 A;  2NZ0 B;  3OGM A;  3I3N A;  3BIM A;  3MKS A;  3B84 A;  4J8Z A;  2OVR A;  2IHC A;  4UIJ A;  5FTA A;  3DRX A;  2YY9 A;  2PPI A;  3HVE B;  3KVT A;  5LLI B;  4JTD B;  4I6J C;  3M52 A;  5BXH A;  2OVP A;  2P1M A;  4CXJ A;  3E4U A;  3M4T A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5BXBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations