5BXD | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	101
structure length	101
Chain Sequence	NAPVHIDVGGHMYTSSLATLTKYPESRIGRLFDGTEPIVLDSLKQHYFIDRDGQMFRYILNFLRTSKLLIPDDFKDYTLLYEEAKYFQLQPMLLEMERWKQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Homo sapiens
publication title	Structural Insights into KCTD Protein Assembly and Cullin3 Recognition. pubmed doi rcsb
molecule keywords	BTB/POZ domain-containing protein KCTD1
total genus	25
structure length	101
sequence length	101
chains with identical sequence	B, C, D, E
ec nomenclature
pdb deposition date	2015-06-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02214	BTB_2	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	5bxdA00

4W9EB 1EODA 4W9LB 2Q81A 4W9HB 4J8ZA 3MKSA 2I2RA 4JGHC 3ZKJB 4B9KB 2E32B 2P1NA 3M5BA 2IHCA 4HXIA 3GA1A 4BGCA 3OGLA 1FQVB 3C6PA 4BKSB 2ASTA 3ZRFB 4CXJA 2JZ3C 3HTMA 4WQOC 1R2BA 1FS1B 1LDKD 3E4UA 4U77A 3ZRCB 2VKPA 1T1DA 3M4TA 2OVRA 5H7GA 5A15A 5DADA 2P1PA 1R29A 1EOFA 3OHVA 4CXTA 5BXHA 2NN2A 4U2NA 1DSXA 5HZGC 5FTAA 3HQIA 3ZTDB 1VCBB 1HV2A 2A79B 2R9RB 1CS3A 5BO4C 4JTDB 4N9F5 4W9GB 2IF5A 2IZVC 3C6NA 3DCGB 3HVEB 3ZNGB 3ZUNB 4JTAB 4CP3A 4AWJB 4I6JC 1LM8C 1S1GA 1QDWA 2P1OA 4B9KE 2VPKA 2NZ0B 1R28A 1QDVA 4CXIA 2MA9C 2OVQA 4W9FB 5H7HA 1NN7A 4ZOUA 4AP2A 4EOZA 5IBKA 4CRHA 2P1QA 4W9DB 5LLIB 3DRZA 1A68A 5HYWB 3BIMA 3OGKA 4W9IB 4W9CB 2C9WC 3M52A 3B84A 4W9JB 3HVEA 5EUPA 3ZTCB 1EOEA 4B95B 1NEXA 1FS2B 3FKCA 5A6RA 5DAFA 3LNMB 4U2MA 2FNJC 3OGMA 3LBZA 3L2OA 3LUTB 4JTCB 2YY9A 4W9HH 3WSOB 5JH5B 4UIJA 3M8VA 4BKTB 2E31B 3C6OA 1LQBB 3V7DA 2ASSA 5BXDA 2Z8HA 1EXBE 1P22B 2PPIA 4UYIA 4AJYC 4APFA 3I3NA 3OHUA 5BXBA 1BUOA 4W9KB 3KVTA 2OVPA 2P1MA 3HU6A
chains in the Genus database with same CATH superfamily

4W9EB 1EODA 4W9LB 2Q81A 4W9HB 4J8ZA 3MKSA 2I2RA 4JGHC 3ZKJB 4B9KB 2E32B 2P1NA 3M5BA 2IHCA 4HXIA 3GA1A 4BGCA 3OGLA 1FQVB 3C6PA 4BKSB 2ASTA 3ZRFB 4CXJA 2JZ3C 3HTMA 4WQOC 1R2BA 1FS1B 1LDKD 3DRXA 3E4UA 4U77A 3ZRCB 2VKPA 1T1DA 3M4TA 2OVRA 5H7GA 5A15A 5DADA 2P1PA 1R29A 1EOFA 3OHVA 4CXTA 5BXHA 2NN2A 4U2NA 1DSXA 5HZGC 5FTAA 3HQIA 3ZTDB 1VCBB 1HV2A 2A79B 2R9RB 1CS3A 5BO4C 4JTDB 4N9F5 4W9GB 2IF5A 2IZVC 3C6NA 3DCGB 3HVEB 3ZNGB 3ZUNB 4JTAB 4CP3A 4AWJB 4I6JC 3DRYA 1LM8C 1S1GA 1QDWA 2P1OA 4B9KE 2VPKA 2NZ0B 4ZGCA 1R28A 1QDVA 4CXIA 2MA9C 2OVQA 4W9FB 5H7HA 1NN7A 4ZOUA 4AP2A 4EOZA 5IBKA 4CRHA 2P1QA 4W9DB 5LLIB 3DRZA 1A68A 5HYWB 3BIMA 3OGKA 4W9IB 4W9CB 2C9WC 3M52A 3B84A 4W9JB 3HVEA 5EUPA 3ZTCB 1EOEA 4B95B 1NEXA 1FS2B 3FKCA 5A6RA 5DAFA 3LNMB 4U2MA 2FNJC 3OGMA 3LBZA 3L2OA 3LUTB 4JTCB 2YY9A 4W9HH 3WSOB 5JH5B 4UIJA 3M8VA 4BKTB 2E31B 3C6OA 1LQBB 3V7DA 2ASSA 5BXDA 2Z8HA 1EXBE 1P22B 2PPIA 4UYIA 4AJYC 4APFA 4YY8A 3I3NA 3OHUA 5BXBA 1BUOA 4W9KB 3KVTA 2OVPA 2P1MA 3HU6A
chains in the Genus database with same CATH topology

4W9EB 1EODA 4W9LB 2Q81A 4W9HB 4J8ZA 3MKSA 2I2RA 4JGHC 3ZKJB 4B9KB 2E32B 2P1NA 3M5BA 2IHCA 4HXIA 3GA1A 4BGCA 3OGLA 1FQVB 3C6PA 4BKSB 2ASTA 3ZRFB 4CXJA 2JZ3C 3HTMA 4WQOC 1R2BA 1FS1B 1LDKD 3DRXA 3E4UA 4U77A 3ZRCB 2VKPA 1T1DA 3M4TA 2OVRA 5H7GA 5A15A 5DADA 2P1PA 1R29A 1EOFA 3OHVA 4CXTA 5BXHA 2NN2A 4U2NA 1DSXA 5HZGC 5FTAA 3HQIA 3ZTDB 1VCBB 1HV2A 2A79B 2R9RB 1CS3A 5BO4C 4JTDB 4N9F5 4W9GB 2IF5A 2IZVC 3C6NA 3DCGB 3HVEB 3ZNGB 3ZUNB 4JTAB 4CP3A 4AWJB 4I6JC 3DRYA 1LM8C 1S1GA 1QDWA 2P1OA 4B9KE 2VPKA 2NZ0B 4ZGCA 1R28A 1QDVA 4CXIA 2MA9C 2OVQA 4W9FB 5H7HA 1NN7A 4ZOUA 4AP2A 4EOZA 5IBKA 4CRHA 2P1QA 4W9DB 5LLIB 3DRZA 1A68A 5HYWB 3BIMA 3OGKA 4W9IB 4W9CB 2C9WC 3M52A 3B84A 4W9JB 3HVEA 5EUPA 3ZTCB 1EOEA 4B95B 1NEXA 1FS2B 3FKCA 5A6RA 5DAFA 3LNMB 4U2MA 2FNJC 3OGMA 3LBZA 3L2OA 3LUTB 4JTCB 2YY9A 4W9HH 3WSOB 5JH5B 4UIJA 3M8VA 4BKTB 2E31B 3C6OA 1LQBB 3V7DA 2ASSA 5BXDA 2Z8HA 1EXBE 1P22B 2PPIA 4UYIA 4AJYC 4APFA 4YY8A 3I3NA 3OHUA 5BXBA 1BUOA 4W9KB 3KVTA 2OVPA 2P1MA 3HU6A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 4W9E B;  1EOD A;  4W9L B;  2Q81 A;  4W9H B;  4J8Z A;  3MKS A;  2I2R A;  4JGH C;  3ZKJ B;  4B9K B;  2E32 B;  2P1N A;  3M5B A;  2IHC A;  4HXI A;  3GA1 A;  4BGC A;  3OGL A;  1FQV B;  3C6P A;  4BKS B;  2AST A;  3ZRF B;  4CXJ A;  2JZ3 C;  3HTM A;  4WQO C;  1R2B A;  1FS1 B;  1LDK D;  3E4U A;  4U77 A;  3ZRC B;  2VKP A;  1T1D A;  3M4T A;  2OVR A;  5H7G A;  5A15 A;  5DAD A;  2P1P A;  1R29 A;  1EOF A;  3OHV A;  4CXT A;  5BXH A;  2NN2 A;  4U2N A;  1DSX A;  5HZG C;  5FTA A;  3HQI A;  3ZTD B;  1VCB B;  1HV2 A;  2A79 B;  2R9R B;  1CS3 A;  5BO4 C;  4JTD B;  4N9F 5;  4W9G B;  2IF5 A;  2IZV C;  3C6N A;  3DCG B;  3HVE B;  3ZNG B;  3ZUN B;  4JTA B;  4CP3 A;  4AWJ B;  4I6J C;  1LM8 C;  1S1G A;  1QDW A;  2P1O A;  4B9K E;  2VPK A;  2NZ0 B;  1R28 A;  1QDV A;  4CXI A;  2MA9 C;  2OVQ A;  4W9F B;  5H7H A;  1NN7 A;  4ZOU A;  4AP2 A;  4EOZ A;  5IBK A;  4CRH A;  2P1Q A;  4W9D B;  5LLI B;  3DRZ A;  1A68 A;  5HYW B;  3BIM A;  3OGK A;  4W9I B;  4W9C B;  2C9W C;  3M52 A;  3B84 A;  4W9J B;  3HVE A;  5EUP A;  3ZTC B;  1EOE A;  4B95 B;  1NEX A;  1FS2 B;  3FKC A;  5A6R A;  5DAF A;  3LNM B;  4U2M A;  2FNJ C;  3OGM A;  3LBZ A;  3L2O A;  3LUT B;  4JTC B;  2YY9 A;  4W9H H;  3WSO B;  5JH5 B;  4UIJ A;  3M8V A;  4BKT B;  2E31 B;  3C6O A;  1LQB B;  3V7D A;  2ASS A;  5BXD A;  2Z8H A;  1EXB E;  1P22 B;  2PPI A;  4UYI A;  4AJY C;  4APF A;  3I3N A;  3OHU A;  5BXB A;  1BUO A;  4W9K B;  3KVT A;  2OVP A;  2P1M A;  3HU6 A; 
#chains in the Genus database with same CATH topology
 4W9E B;  1EOD A;  4W9L B;  2Q81 A;  4W9H B;  4J8Z A;  3MKS A;  2I2R A;  4JGH C;  3ZKJ B;  4B9K B;  2E32 B;  2P1N A;  3M5B A;  2IHC A;  4HXI A;  3GA1 A;  4BGC A;  3OGL A;  1FQV B;  3C6P A;  4BKS B;  2AST A;  3ZRF B;  4CXJ A;  2JZ3 C;  3HTM A;  4WQO C;  1R2B A;  1FS1 B;  1LDK D;  3DRX A;  3E4U A;  4U77 A;  3ZRC B;  2VKP A;  1T1D A;  3M4T A;  2OVR A;  5H7G A;  5A15 A;  5DAD A;  2P1P A;  1R29 A;  1EOF A;  3OHV A;  4CXT A;  5BXH A;  2NN2 A;  4U2N A;  1DSX A;  5HZG C;  5FTA A;  3HQI A;  3ZTD B;  1VCB B;  1HV2 A;  2A79 B;  2R9R B;  1CS3 A;  5BO4 C;  4JTD B;  4N9F 5;  4W9G B;  2IF5 A;  2IZV C;  3C6N A;  3DCG B;  3HVE B;  3ZNG B;  3ZUN B;  4JTA B;  4CP3 A;  4AWJ B;  4I6J C;  3DRY A;  1LM8 C;  1S1G A;  1QDW A;  2P1O A;  4B9K E;  2VPK A;  2NZ0 B;  4ZGC A;  1R28 A;  1QDV A;  4CXI A;  2MA9 C;  2OVQ A;  4W9F B;  5H7H A;  1NN7 A;  4ZOU A;  4AP2 A;  4EOZ A;  5IBK A;  4CRH A;  2P1Q A;  4W9D B;  5LLI B;  3DRZ A;  1A68 A;  5HYW B;  3BIM A;  3OGK A;  4W9I B;  4W9C B;  2C9W C;  3M52 A;  3B84 A;  4W9J B;  3HVE A;  5EUP A;  3ZTC B;  1EOE A;  4B95 B;  1NEX A;  1FS2 B;  3FKC A;  5A6R A;  5DAF A;  3LNM B;  4U2M A;  2FNJ C;  3OGM A;  3LBZ A;  3L2O A;  3LUT B;  4JTC B;  2YY9 A;  4W9H H;  3WSO B;  5JH5 B;  4UIJ A;  3M8V A;  4BKT B;  2E31 B;  3C6O A;  1LQB B;  3V7D A;  2ASS A;  5BXD A;  2Z8H A;  1EXB E;  1P22 B;  2PPI A;  4UYI A;  4AJY C;  4APF A;  4YY8 A;  3I3N A;  3OHU A;  5BXB A;  1BUO A;  4W9K B;  3KVT A;  2OVP A;  2P1M A;  3HU6 A; 
#chains in the Genus database with same CATH homology
 4W9E B;  1EOD A;  4W9L B;  2Q81 A;  4W9H B;  4J8Z A;  3MKS A;  2I2R A;  4JGH C;  3ZKJ B;  4B9K B;  2E32 B;  2P1N A;  3M5B A;  2IHC A;  4HXI A;  3GA1 A;  4BGC A;  3OGL A;  1FQV B;  3C6P A;  4BKS B;  2AST A;  3ZRF B;  4CXJ A;  2JZ3 C;  3HTM A;  4WQO C;  1R2B A;  1FS1 B;  1LDK D;  3DRX A;  3E4U A;  4U77 A;  3ZRC B;  2VKP A;  1T1D A;  3M4T A;  2OVR A;  5H7G A;  5A15 A;  5DAD A;  2P1P A;  1R29 A;  1EOF A;  3OHV A;  4CXT A;  5BXH A;  2NN2 A;  4U2N A;  1DSX A;  5HZG C;  5FTA A;  3HQI A;  3ZTD B;  1VCB B;  1HV2 A;  2A79 B;  2R9R B;  1CS3 A;  5BO4 C;  4JTD B;  4N9F 5;  4W9G B;  2IF5 A;  2IZV C;  3C6N A;  3DCG B;  3HVE B;  3ZNG B;  3ZUN B;  4JTA B;  4CP3 A;  4AWJ B;  4I6J C;  3DRY A;  1LM8 C;  1S1G A;  1QDW A;  2P1O A;  4B9K E;  2VPK A;  2NZ0 B;  4ZGC A;  1R28 A;  1QDV A;  4CXI A;  2MA9 C;  2OVQ A;  4W9F B;  5H7H A;  1NN7 A;  4ZOU A;  4AP2 A;  4EOZ A;  5IBK A;  4CRH A;  2P1Q A;  4W9D B;  5LLI B;  3DRZ A;  1A68 A;  5HYW B;  3BIM A;  3OGK A;  4W9I B;  4W9C B;  2C9W C;  3M52 A;  3B84 A;  4W9J B;  3HVE A;  5EUP A;  3ZTC B;  1EOE A;  4B95 B;  1NEX A;  1FS2 B;  3FKC A;  5A6R A;  5DAF A;  3LNM B;  4U2M A;  2FNJ C;  3OGM A;  3LBZ A;  3L2O A;  3LUT B;  4JTC B;  2YY9 A;  4W9H H;  3WSO B;  5JH5 B;  4UIJ A;  3M8V A;  4BKT B;  2E31 B;  3C6O A;  1LQB B;  3V7D A;  2ASS A;  5BXD A;  2Z8H A;  1EXB E;  1P22 B;  2PPI A;  4UYI A;  4AJY C;  4APF A;  4YY8 A;  3I3N A;  3OHU A;  5BXB A;  1BUO A;  4W9K B;  3KVT A;  2OVP A;  2P1M A;  3HU6 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5BXDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations