5EUP | Genus

Total Genus 37

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	37
sequence length	120
structure length	120
Chain Sequence	GEVKSVKVDNWGVFFLQKLQNFFNKTDYCDLTLQFRDNSQLKVHRLVLSACTDYFNVLEQTCEIVDDALIMPNEFQADVVVPIVNFMYTGTLEFELKMYGKLLRTAKEMNMTVLLKLLEA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Drosophila melanogaster
publication title	Newly Characterized Region of CP190 Associates with Microtubules and Mediates Proper Spindle Morphology in Drosophila Stem Cells. pubmed doi rcsb
molecule keywords	Centrosome-associated zinc finger protein CP190
total genus	37
structure length	120
sequence length	120
ec nomenclature
pdb deposition date	2015-11-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00651	BTB	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	5eupA00

1R29A 4JTAB 5H7GA 5IBKA 2OVQA 1QDWA 5DAFA 3ZTCB 1DSXA 2FNJC 5BXHA 3M8VA 3OGMA 3OGLA 1R28A 4W9IB 1LQBB 4EOZA 2E32B 4W9CB 2NN2A 2ASTA 5A15A 5JH5B 3L2OA 2JZ3C 5EUPA 1A68A 3ZUNB 2IF5A 2P1PA 3GA1A 2Q81A 3ZRFB 4AP2A 4W9GB 3I3NA 5A6RA 4B9KE 2PPIA 2P1OA 1NEXA 3B84A 2Z8HA 2I2RA 5DADA 2OVPA 4CXIA 4U2NA 4ZOUA 2C9WC 4I6JC 4CXJA 4W9HB 2OVRA 3M5BA 1NN7A 1EXBE 4B95B 5BXBA 5HYWB 1HV2A 5BXDA 3C6OA 3ZNGB 3ZRCB 5BO4C 2VKPA 3DRZA 4CP3A 4W9DB 4JTDB 3HVEA 4BGCA 4UIJA 3DCGB 4CXTA 5H7HA 3KVTA 4W9EB 2P1NA 1BUOA 2P1QA 4CRHA 3OGKA 4U2MA 4W9KB 3WSOB 4AJYC 3M4TA 4W9LB 4J8ZA 4W9FB 1EODA 3OHUA 1LDKD 2YY9A 1QDVA 2R9RB 4U77A 2A79B 4W9JB 3ZKJB 2P1MA 1S1GA 1P22B 1R2BA 4JGHC 5FTAA 4APFA 4JTCB 1LM8C 3LBZA 1VCBB 3LUTB 5HZGC 1FS1B 3HU6A 3C6PA 3M52A 3HVEB 3ZTDB 2E31B 1T1DA 4B9KB 3E4UA 4BKSB 3OHVA 2IHCA 3LNMB 1FQVB 3HQIA 2MA9C 3FKCA 3MKSA 4N9F5 5LLIB 3HTMA 3C6NA 1CS3A 4WQOC 3V7DA 4BKTB 2VPKA 1FS2B 4UYIA 4W9HH 2ASSA 3BIMA 2IZVC 1EOFA 1EOEA 2NZ0B 4HXIA 4AWJB
chains in the Genus database with same CATH superfamily

1R29A 4JTAB 5H7GA 5IBKA 2OVQA 1QDWA 5DAFA 3ZTCB 1DSXA 2FNJC 5BXHA 3M8VA 3OGMA 3OGLA 1R28A 4W9IB 1LQBB 4EOZA 2E32B 4W9CB 2NN2A 2ASTA 5A15A 5JH5B 3L2OA 2JZ3C 5EUPA 1A68A 3ZUNB 2IF5A 2P1PA 3GA1A 2Q81A 3ZRFB 3DRYA 4AP2A 4W9GB 3I3NA 5A6RA 4B9KE 2PPIA 2P1OA 1NEXA 3B84A 2Z8HA 2I2RA 5DADA 2OVPA 4CXIA 4U2NA 4ZOUA 2C9WC 4I6JC 4CXJA 4ZGCA 4W9HB 2OVRA 3M5BA 1NN7A 1EXBE 4B95B 5BXBA 5HYWB 1HV2A 5BXDA 3C6OA 3ZNGB 3ZRCB 5BO4C 2VKPA 3DRZA 4CP3A 4W9DB 4JTDB 3HVEA 4BGCA 4UIJA 3DCGB 4CXTA 5H7HA 3KVTA 4W9EB 2P1NA 1BUOA 2P1QA 4CRHA 3OGKA 4U2MA 4W9KB 3WSOB 4AJYC 3M4TA 4W9LB 4J8ZA 4W9FB 1EODA 3OHUA 1LDKD 2YY9A 1QDVA 2R9RB 4U77A 2A79B 4W9JB 3ZKJB 2P1MA 1S1GA 1P22B 1R2BA 4JGHC 5FTAA 4APFA 4JTCB 1LM8C 3LBZA 1VCBB 3LUTB 5HZGC 1FS1B 3HU6A 3C6PA 3M52A 3HVEB 3ZTDB 2E31B 1T1DA 4B9KB 4YY8A 3E4UA 3DRXA 4BKSB 3OHVA 2IHCA 3LNMB 1FQVB 3HQIA 2MA9C 3FKCA 3MKSA 4N9F5 5LLIB 3HTMA 3C6NA 1CS3A 4WQOC 3V7DA 4BKTB 2VPKA 1FS2B 4UYIA 4W9HH 2ASSA 3BIMA 2IZVC 1EOFA 1EOEA 2NZ0B 4HXIA 4AWJB
chains in the Genus database with same CATH topology

1R29A 4JTAB 5H7GA 5IBKA 2OVQA 1QDWA 5DAFA 3ZTCB 1DSXA 2FNJC 5BXHA 3M8VA 3OGMA 3OGLA 1R28A 4W9IB 1LQBB 4EOZA 2E32B 4W9CB 2NN2A 2ASTA 5A15A 5JH5B 3L2OA 2JZ3C 5EUPA 1A68A 3ZUNB 2IF5A 2P1PA 3GA1A 2Q81A 3ZRFB 3DRYA 4AP2A 4W9GB 3I3NA 5A6RA 4B9KE 2PPIA 2P1OA 1NEXA 3B84A 2Z8HA 2I2RA 5DADA 2OVPA 4CXIA 4U2NA 4ZOUA 2C9WC 4I6JC 4CXJA 4ZGCA 4W9HB 2OVRA 3M5BA 1NN7A 1EXBE 4B95B 5BXBA 5HYWB 1HV2A 5BXDA 3C6OA 3ZNGB 3ZRCB 5BO4C 2VKPA 3DRZA 4CP3A 4W9DB 4JTDB 3HVEA 4BGCA 4UIJA 3DCGB 4CXTA 5H7HA 3KVTA 4W9EB 2P1NA 1BUOA 2P1QA 4CRHA 3OGKA 4U2MA 4W9KB 3WSOB 4AJYC 3M4TA 4W9LB 4J8ZA 4W9FB 1EODA 3OHUA 1LDKD 2YY9A 1QDVA 2R9RB 4U77A 2A79B 4W9JB 3ZKJB 2P1MA 1S1GA 1P22B 1R2BA 4JGHC 5FTAA 4APFA 4JTCB 1LM8C 3LBZA 1VCBB 3LUTB 5HZGC 1FS1B 3HU6A 3C6PA 3M52A 3HVEB 3ZTDB 2E31B 1T1DA 4B9KB 4YY8A 3E4UA 3DRXA 4BKSB 3OHVA 2IHCA 3LNMB 1FQVB 3HQIA 2MA9C 3FKCA 3MKSA 4N9F5 5LLIB 3HTMA 3C6NA 1CS3A 4WQOC 3V7DA 4BKTB 2VPKA 1FS2B 4UYIA 4W9HH 2ASSA 3BIMA 2IZVC 1EOFA 1EOEA 2NZ0B 4HXIA 4AWJB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 1R29 A;  4JTA B;  5H7G A;  5IBK A;  2OVQ A;  1QDW A;  5DAF A;  3ZTC B;  1DSX A;  2FNJ C;  5BXH A;  3M8V A;  3OGM A;  3OGL A;  1R28 A;  4W9I B;  1LQB B;  4EOZ A;  2E32 B;  4W9C B;  2NN2 A;  2AST A;  5A15 A;  5JH5 B;  3L2O A;  2JZ3 C;  5EUP A;  1A68 A;  3ZUN B;  2IF5 A;  2P1P A;  3GA1 A;  2Q81 A;  3ZRF B;  4AP2 A;  4W9G B;  3I3N A;  5A6R A;  4B9K E;  2PPI A;  2P1O A;  1NEX A;  3B84 A;  2Z8H A;  2I2R A;  5DAD A;  2OVP A;  4CXI A;  4U2N A;  4ZOU A;  2C9W C;  4I6J C;  4CXJ A;  4W9H B;  2OVR A;  3M5B A;  1NN7 A;  1EXB E;  4B95 B;  5BXB A;  5HYW B;  1HV2 A;  5BXD A;  3C6O A;  3ZNG B;  3ZRC B;  5BO4 C;  2VKP A;  3DRZ A;  4CP3 A;  4W9D B;  4JTD B;  3HVE A;  4BGC A;  4UIJ A;  3DCG B;  4CXT A;  5H7H A;  3KVT A;  4W9E B;  2P1N A;  1BUO A;  2P1Q A;  4CRH A;  3OGK A;  4U2M A;  4W9K B;  3WSO B;  4AJY C;  3M4T A;  4W9L B;  4J8Z A;  4W9F B;  1EOD A;  3OHU A;  1LDK D;  2YY9 A;  1QDV A;  2R9R B;  4U77 A;  2A79 B;  4W9J B;  3ZKJ B;  2P1M A;  1S1G A;  1P22 B;  1R2B A;  4JGH C;  5FTA A;  4APF A;  4JTC B;  1LM8 C;  3LBZ A;  1VCB B;  3LUT B;  5HZG C;  1FS1 B;  3HU6 A;  3C6P A;  3M52 A;  3HVE B;  3ZTD B;  2E31 B;  1T1D A;  4B9K B;  3E4U A;  4BKS B;  3OHV A;  2IHC A;  3LNM B;  1FQV B;  3HQI A;  2MA9 C;  3FKC A;  3MKS A;  4N9F 5;  5LLI B;  3HTM A;  3C6N A;  1CS3 A;  4WQO C;  3V7D A;  4BKT B;  2VPK A;  1FS2 B;  4UYI A;  4W9H H;  2ASS A;  3BIM A;  2IZV C;  1EOF A;  1EOE A;  2NZ0 B;  4HXI A;  4AWJ B; 
#chains in the Genus database with same CATH topology
 1R29 A;  4JTA B;  5H7G A;  5IBK A;  2OVQ A;  1QDW A;  5DAF A;  3ZTC B;  1DSX A;  2FNJ C;  5BXH A;  3M8V A;  3OGM A;  3OGL A;  1R28 A;  4W9I B;  1LQB B;  4EOZ A;  2E32 B;  4W9C B;  2NN2 A;  2AST A;  5A15 A;  5JH5 B;  3L2O A;  2JZ3 C;  5EUP A;  1A68 A;  3ZUN B;  2IF5 A;  2P1P A;  3GA1 A;  2Q81 A;  3ZRF B;  3DRY A;  4AP2 A;  4W9G B;  3I3N A;  5A6R A;  4B9K E;  2PPI A;  2P1O A;  1NEX A;  3B84 A;  2Z8H A;  2I2R A;  5DAD A;  2OVP A;  4CXI A;  4U2N A;  4ZOU A;  2C9W C;  4I6J C;  4CXJ A;  4ZGC A;  4W9H B;  2OVR A;  3M5B A;  1NN7 A;  1EXB E;  4B95 B;  5BXB A;  5HYW B;  1HV2 A;  5BXD A;  3C6O A;  3ZNG B;  3ZRC B;  5BO4 C;  2VKP A;  3DRZ A;  4CP3 A;  4W9D B;  4JTD B;  3HVE A;  4BGC A;  4UIJ A;  3DCG B;  4CXT A;  5H7H A;  3KVT A;  4W9E B;  2P1N A;  1BUO A;  2P1Q A;  4CRH A;  3OGK A;  4U2M A;  4W9K B;  3WSO B;  4AJY C;  3M4T A;  4W9L B;  4J8Z A;  4W9F B;  1EOD A;  3OHU A;  1LDK D;  2YY9 A;  1QDV A;  2R9R B;  4U77 A;  2A79 B;  4W9J B;  3ZKJ B;  2P1M A;  1S1G A;  1P22 B;  1R2B A;  4JGH C;  5FTA A;  4APF A;  4JTC B;  1LM8 C;  3LBZ A;  1VCB B;  3LUT B;  5HZG C;  1FS1 B;  3HU6 A;  3C6P A;  3M52 A;  3HVE B;  3ZTD B;  2E31 B;  1T1D A;  4B9K B;  4YY8 A;  3E4U A;  3DRX A;  4BKS B;  3OHV A;  2IHC A;  3LNM B;  1FQV B;  3HQI A;  2MA9 C;  3FKC A;  3MKS A;  4N9F 5;  5LLI B;  3HTM A;  3C6N A;  1CS3 A;  4WQO C;  3V7D A;  4BKT B;  2VPK A;  1FS2 B;  4UYI A;  4W9H H;  2ASS A;  3BIM A;  2IZV C;  1EOF A;  1EOE A;  2NZ0 B;  4HXI A;  4AWJ B; 
#chains in the Genus database with same CATH homology
 1R29 A;  4JTA B;  5H7G A;  5IBK A;  2OVQ A;  1QDW A;  5DAF A;  3ZTC B;  1DSX A;  2FNJ C;  5BXH A;  3M8V A;  3OGM A;  3OGL A;  1R28 A;  4W9I B;  1LQB B;  4EOZ A;  2E32 B;  4W9C B;  2NN2 A;  2AST A;  5A15 A;  5JH5 B;  3L2O A;  2JZ3 C;  5EUP A;  1A68 A;  3ZUN B;  2IF5 A;  2P1P A;  3GA1 A;  2Q81 A;  3ZRF B;  3DRY A;  4AP2 A;  4W9G B;  3I3N A;  5A6R A;  4B9K E;  2PPI A;  2P1O A;  1NEX A;  3B84 A;  2Z8H A;  2I2R A;  5DAD A;  2OVP A;  4CXI A;  4U2N A;  4ZOU A;  2C9W C;  4I6J C;  4CXJ A;  4ZGC A;  4W9H B;  2OVR A;  3M5B A;  1NN7 A;  1EXB E;  4B95 B;  5BXB A;  5HYW B;  1HV2 A;  5BXD A;  3C6O A;  3ZNG B;  3ZRC B;  5BO4 C;  2VKP A;  3DRZ A;  4CP3 A;  4W9D B;  4JTD B;  3HVE A;  4BGC A;  4UIJ A;  3DCG B;  4CXT A;  5H7H A;  3KVT A;  4W9E B;  2P1N A;  1BUO A;  2P1Q A;  4CRH A;  3OGK A;  4U2M A;  4W9K B;  3WSO B;  4AJY C;  3M4T A;  4W9L B;  4J8Z A;  4W9F B;  1EOD A;  3OHU A;  1LDK D;  2YY9 A;  1QDV A;  2R9R B;  4U77 A;  2A79 B;  4W9J B;  3ZKJ B;  2P1M A;  1S1G A;  1P22 B;  1R2B A;  4JGH C;  5FTA A;  4APF A;  4JTC B;  1LM8 C;  3LBZ A;  1VCB B;  3LUT B;  5HZG C;  1FS1 B;  3HU6 A;  3C6P A;  3M52 A;  3HVE B;  3ZTD B;  2E31 B;  1T1D A;  4B9K B;  4YY8 A;  3E4U A;  3DRX A;  4BKS B;  3OHV A;  2IHC A;  3LNM B;  1FQV B;  3HQI A;  2MA9 C;  3FKC A;  3MKS A;  4N9F 5;  5LLI B;  3HTM A;  3C6N A;  1CS3 A;  4WQO C;  3V7D A;  4BKT B;  2VPK A;  1FS2 B;  4UYI A;  4W9H H;  2ASS A;  3BIM A;  2IZV C;  1EOF A;  1EOE A;  2NZ0 B;  4HXI A;  4AWJ B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5EUPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations