5FTA | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	101
structure length	101
Chain Sequence	SSKYVKLNVGGALYYTTMQTLTKQDTMLKAMLSGRMEVLTDSEGWILIDRCGKHFGTILNYLRDGAVPLPESRREIEELLAEAKYYLVQGLVEECQAALQN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Homo sapiens
publication title	Structural complexity in the KCTD family of Cullin3-dependent E3 ubiquitin ligases. pubmed doi rcsb
molecule keywords	BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEG
total genus	28
structure length	101
sequence length	101
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2016-01-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02214	BTB_2	BTB/POZ domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	5ftaA00

2FNJC 1P22B 4W9IB 3V7DA 2VKPA 5A15A 3HU6A 2P1NA 4W9CB 5BXHA 3GA1A 1LM8C 2Z8HA 2P1PA 4JTCB 3OGLA 1NN7A 3M8VA 4UIJA 3ZUNB 4AJYC 3M5BA 1EOFA 2OVRA 4AP2A 4CP3A 4WQOC 4CXTA 3WSOB 1FQVB 1FS1B 3OHVA 3HQIA 4AWJB 2R9RB 1LQBB 4B9KB 1QDVA 4B95B 1A68A 4W9FB 2IF5A 3OGMA 3M52A 3KVTA 2MA9C 4CXJA 4W9GB 4W9HH 4CXIA 3OHUA 2ASSA 3ZRCB 1EOEA 2P1OA 2IZVC 5BO4C 1T1DA 5FTAA 1R29A 1DSXA 3ZRFB 3HTMA 3MKSA 4UYIA 4J8ZA 4N9F5 2IHCA 4W9DB 1FS2B 3BIMA 5DAFA 4BKTB 4EOZA 4JGHC 5A6RA 3LUTB 5H7GA 1R28A 5JH5B 5LLIB 3ZTCB 5BXBA 5DADA 3HVEB 3C6NA 5H7HA 2PPIA 1S1GA 2YY9A 4U2NA 3ZKJB 3C6PA 5EUPA 3ZNGB 5BXDA 3LNMB 1EXBE 1BUOA 3M4TA 1LDKD 1QDWA 2C9WC 1EODA 4W9LB 1HV2A 3HVEA 2OVPA 3DCGB 2ASTA 3DRZA 4I6JC 4W9EB 3L2OA 4U77A 1VCBB 2NN2A 5HYWB 4JTAB 2Q81A 2VPKA 5IBKA 2P1MA 2OVQA 3E4UA 2I2RA 3B84A 4BKSB 2JZ3C 3ZTDB 4APFA 5HZGC 3I3NA 4U2MA 1NEXA 3FKCA 1R2BA 3C6OA 2P1QA 2NZ0B 3LBZA 1CS3A 2E32B 4W9HB 4W9KB 4CRHA 2A79B 2E31B 4W9JB 4HXIA 4B9KE 3OGKA 4JTDB 4BGCA 4ZOUA
chains in the Genus database with same CATH superfamily

2FNJC 1P22B 4YY8A 4W9IB 3V7DA 2VKPA 5A15A 3HU6A 2P1NA 4W9CB 5BXHA 3GA1A 1LM8C 2Z8HA 2P1PA 4JTCB 3DRYA 3OGLA 1NN7A 3M8VA 4UIJA 3ZUNB 4AJYC 3M5BA 1EOFA 2OVRA 4AP2A 4CP3A 4WQOC 4CXTA 3WSOB 1FQVB 1FS1B 3OHVA 3HQIA 4AWJB 2R9RB 1LQBB 4B9KB 1QDVA 4B95B 1A68A 4W9FB 2IF5A 3OGMA 3M52A 3KVTA 2MA9C 4CXJA 4W9GB 4W9HH 4CXIA 3OHUA 2ASSA 3ZRCB 1EOEA 2P1OA 4ZGCA 2IZVC 5BO4C 1T1DA 5FTAA 1R29A 1DSXA 3ZRFB 3HTMA 3MKSA 4UYIA 4J8ZA 4N9F5 2IHCA 4W9DB 1FS2B 3BIMA 5DAFA 4BKTB 4EOZA 4JGHC 5A6RA 3LUTB 5H7GA 1R28A 5JH5B 5LLIB 3ZTCB 5BXBA 5DADA 3HVEB 3C6NA 5H7HA 2PPIA 1S1GA 2YY9A 4U2NA 3ZKJB 3C6PA 5EUPA 3ZNGB 5BXDA 3LNMB 1EXBE 1BUOA 3M4TA 1LDKD 1QDWA 2C9WC 1EODA 4W9LB 1HV2A 3HVEA 2OVPA 3DCGB 2ASTA 3DRZA 4I6JC 4W9EB 3L2OA 4U77A 1VCBB 2NN2A 5HYWB 4JTAB 2Q81A 2VPKA 5IBKA 2P1MA 2OVQA 3E4UA 2I2RA 3B84A 4BKSB 2JZ3C 3ZTDB 4APFA 5HZGC 3I3NA 4U2MA 1NEXA 3FKCA 1R2BA 3C6OA 2P1QA 2NZ0B 3DRXA 3LBZA 1CS3A 2E32B 4W9HB 4W9KB 4CRHA 2A79B 2E31B 4W9JB 4HXIA 4B9KE 3OGKA 4JTDB 4BGCA 4ZOUA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2FNJ C;  1P22 B;  4W9I B;  3V7D A;  2VKP A;  5A15 A;  3HU6 A;  2P1N A;  4W9C B;  5BXH A;  3GA1 A;  1LM8 C;  2Z8H A;  2P1P A;  4JTC B;  3OGL A;  1NN7 A;  3M8V A;  4UIJ A;  3ZUN B;  4AJY C;  3M5B A;  1EOF A;  2OVR A;  4AP2 A;  4CP3 A;  4WQO C;  4CXT A;  3WSO B;  1FQV B;  1FS1 B;  3OHV A;  3HQI A;  4AWJ B;  2R9R B;  1LQB B;  4B9K B;  1QDV A;  4B95 B;  1A68 A;  4W9F B;  2IF5 A;  3OGM A;  3M52 A;  3KVT A;  2MA9 C;  4CXJ A;  4W9G B;  4W9H H;  4CXI A;  3OHU A;  2ASS A;  3ZRC B;  1EOE A;  2P1O A;  2IZV C;  5BO4 C;  1T1D A;  5FTA A;  1R29 A;  1DSX A;  3ZRF B;  3HTM A;  3MKS A;  4UYI A;  4J8Z A;  4N9F 5;  2IHC A;  4W9D B;  1FS2 B;  3BIM A;  5DAF A;  4BKT B;  4EOZ A;  4JGH C;  5A6R A;  3LUT B;  5H7G A;  1R28 A;  5JH5 B;  5LLI B;  3ZTC B;  5BXB A;  5DAD A;  3HVE B;  3C6N A;  5H7H A;  2PPI A;  1S1G A;  2YY9 A;  4U2N A;  3ZKJ B;  3C6P A;  5EUP A;  3ZNG B;  5BXD A;  3LNM B;  1EXB E;  1BUO A;  3M4T A;  1LDK D;  1QDW A;  2C9W C;  1EOD A;  4W9L B;  1HV2 A;  3HVE A;  2OVP A;  3DCG B;  2AST A;  3DRZ A;  4I6J C;  4W9E B;  3L2O A;  4U77 A;  1VCB B;  2NN2 A;  5HYW B;  4JTA B;  2Q81 A;  2VPK A;  5IBK A;  2P1M A;  2OVQ A;  3E4U A;  2I2R A;  3B84 A;  4BKS B;  2JZ3 C;  3ZTD B;  4APF A;  5HZG C;  3I3N A;  4U2M A;  1NEX A;  3FKC A;  1R2B A;  3C6O A;  2P1Q A;  2NZ0 B;  3LBZ A;  1CS3 A;  2E32 B;  4W9H B;  4W9K B;  4CRH A;  2A79 B;  2E31 B;  4W9J B;  4HXI A;  4B9K E;  3OGK A;  4JTD B;  4BGC A;  4ZOU A; 
#chains in the Genus database with same CATH topology
 2FNJ C;  1P22 B;  4YY8 A;  4W9I B;  3V7D A;  2VKP A;  5A15 A;  3HU6 A;  2P1N A;  4W9C B;  5BXH A;  3GA1 A;  1LM8 C;  2Z8H A;  2P1P A;  4JTC B;  3DRY A;  3OGL A;  1NN7 A;  3M8V A;  4UIJ A;  3ZUN B;  4AJY C;  3M5B A;  1EOF A;  2OVR A;  4AP2 A;  4CP3 A;  4WQO C;  4CXT A;  3WSO B;  1FQV B;  1FS1 B;  3OHV A;  3HQI A;  4AWJ B;  2R9R B;  1LQB B;  4B9K B;  1QDV A;  4B95 B;  1A68 A;  4W9F B;  2IF5 A;  3OGM A;  3M52 A;  3KVT A;  2MA9 C;  4CXJ A;  4W9G B;  4W9H H;  4CXI A;  3OHU A;  2ASS A;  3ZRC B;  1EOE A;  2P1O A;  4ZGC A;  2IZV C;  5BO4 C;  1T1D A;  5FTA A;  1R29 A;  1DSX A;  3ZRF B;  3HTM A;  3MKS A;  4UYI A;  4J8Z A;  4N9F 5;  2IHC A;  4W9D B;  1FS2 B;  3BIM A;  5DAF A;  4BKT B;  4EOZ A;  4JGH C;  5A6R A;  3LUT B;  5H7G A;  1R28 A;  5JH5 B;  5LLI B;  3ZTC B;  5BXB A;  5DAD A;  3HVE B;  3C6N A;  5H7H A;  2PPI A;  1S1G A;  2YY9 A;  4U2N A;  3ZKJ B;  3C6P A;  5EUP A;  3ZNG B;  5BXD A;  3LNM B;  1EXB E;  1BUO A;  3M4T A;  1LDK D;  1QDW A;  2C9W C;  1EOD A;  4W9L B;  1HV2 A;  3HVE A;  2OVP A;  3DCG B;  2AST A;  3DRZ A;  4I6J C;  4W9E B;  3L2O A;  4U77 A;  1VCB B;  2NN2 A;  5HYW B;  4JTA B;  2Q81 A;  2VPK A;  5IBK A;  2P1M A;  2OVQ A;  3E4U A;  2I2R A;  3B84 A;  4BKS B;  2JZ3 C;  3ZTD B;  4APF A;  5HZG C;  3I3N A;  4U2M A;  1NEX A;  3FKC A;  1R2B A;  3C6O A;  2P1Q A;  2NZ0 B;  3DRX A;  3LBZ A;  1CS3 A;  2E32 B;  4W9H B;  4W9K B;  4CRH A;  2A79 B;  2E31 B;  4W9J B;  4HXI A;  4B9K E;  3OGK A;  4JTD B;  4BGC A;  4ZOU A; 
#chains in the Genus database with same CATH homology
 2FNJ C;  1P22 B;  4YY8 A;  4W9I B;  3V7D A;  2VKP A;  5A15 A;  3HU6 A;  2P1N A;  4W9C B;  5BXH A;  3GA1 A;  1LM8 C;  2Z8H A;  2P1P A;  4JTC B;  3DRY A;  3OGL A;  1NN7 A;  3M8V A;  4UIJ A;  3ZUN B;  4AJY C;  3M5B A;  1EOF A;  2OVR A;  4AP2 A;  4CP3 A;  4WQO C;  4CXT A;  3WSO B;  1FQV B;  1FS1 B;  3OHV A;  3HQI A;  4AWJ B;  2R9R B;  1LQB B;  4B9K B;  1QDV A;  4B95 B;  1A68 A;  4W9F B;  2IF5 A;  3OGM A;  3M52 A;  3KVT A;  2MA9 C;  4CXJ A;  4W9G B;  4W9H H;  4CXI A;  3OHU A;  2ASS A;  3ZRC B;  1EOE A;  2P1O A;  4ZGC A;  2IZV C;  5BO4 C;  1T1D A;  5FTA A;  1R29 A;  1DSX A;  3ZRF B;  3HTM A;  3MKS A;  4UYI A;  4J8Z A;  4N9F 5;  2IHC A;  4W9D B;  1FS2 B;  3BIM A;  5DAF A;  4BKT B;  4EOZ A;  4JGH C;  5A6R A;  3LUT B;  5H7G A;  1R28 A;  5JH5 B;  5LLI B;  3ZTC B;  5BXB A;  5DAD A;  3HVE B;  3C6N A;  5H7H A;  2PPI A;  1S1G A;  2YY9 A;  4U2N A;  3ZKJ B;  3C6P A;  5EUP A;  3ZNG B;  5BXD A;  3LNM B;  1EXB E;  1BUO A;  3M4T A;  1LDK D;  1QDW A;  2C9W C;  1EOD A;  4W9L B;  1HV2 A;  3HVE A;  2OVP A;  3DCG B;  2AST A;  3DRZ A;  4I6J C;  4W9E B;  3L2O A;  4U77 A;  1VCB B;  2NN2 A;  5HYW B;  4JTA B;  2Q81 A;  2VPK A;  5IBK A;  2P1M A;  2OVQ A;  3E4U A;  2I2R A;  3B84 A;  4BKS B;  2JZ3 C;  3ZTD B;  4APF A;  5HZG C;  3I3N A;  4U2M A;  1NEX A;  3FKC A;  1R2B A;  3C6O A;  2P1Q A;  2NZ0 B;  3DRX A;  3LBZ A;  1CS3 A;  2E32 B;  4W9H B;  4W9K B;  4CRH A;  2A79 B;  2E31 B;  4W9J B;  4HXI A;  4B9K E;  3OGK A;  4JTD B;  4BGC A;  4ZOU A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5FTAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations