5HZG | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	153
structure length	130
Chain Sequence	LKSEAVALESQAPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 130 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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130 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/signaling protein/protein binding
source organism	Arabidopsis thaliana
publication title	DWARF14 is a non-canonical hormone receptor for strigolactone pubmed doi rcsb
molecule keywords	Strigolactone esterase D14
total genus	24
structure length	130
sequence length	153
chains with identical sequence	G
ec nomenclature
pdb deposition date	2016-02-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
C	PF01466	Skp1	Skp1 family, dimerisation domain
C	PF03931	Skp1_POZ	Skp1 family, tetramerisation domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.710.10	Alpha Beta	2-Layer Sandwich	Potassium Channel Kv1.1; Chain A	Potassium Channel Kv1.1; Chain A	5hzgC00

2JZ3C 2P1PA 5A15A 1NN7A 3BIMA 2E32B 3M52A 1DSXA 3C6OA 2FNJC 2ASSA 3LUTB 1QDVA 3B84A 4J8ZA 4U2MA 1R29A 4HXIA 5IBKA 2VPKA 2PPIA 4W9FB 4W9JB 4CXIA 4W9GB 3M5BA 4CRHA 2NZ0B 3OGLA 5BXBA 2R9RB 4UYIA 3FKCA 3V7DA 5BO4C 3M8VA 1P22B 4W9KB 1FS1B 4CXTA 4N9F5 4W9EB 3M4TA 4AJYC 4WQOC 4B95B 3ZRCB 1BUOA 4UIJA 4W9DB 5FTAA 1LQBB 1S1GA 4BGCA 1A68A 4I6JC 3ZKJB 1LDKD 4U77A 1R2BA 2Q81A 5HZGC 2E31B 2P1QA 3OGKA 2OVPA 4APFA 4CXJA 2IHCA 4U2NA 3LBZA 3OHUA 1NEXA 5HYWB 2IF5A 4W9HB 5JH5B 5LLIB 1VCBB 4W9HH 3L2OA 2NN2A 4CP3A 1T1DA 4JTDB 5DADA 1EXBE 3DCGB 2VKPA 5H7GA 4W9IB 2A79B 4W9CB 1CS3A 3C6NA 5A6RA 3ZUNB 5DAFA 4W9LB 2ASTA 3C6PA 3MKSA 1LM8C 4BKSB 1EODA 3HU6A 4JTAB 2I2RA 2P1MA 1QDWA 3ZTDB 4AWJB 2MA9C 3E4UA 2YY9A 4B9KB 1EOFA 3I3NA 1HV2A 1EOEA 3KVTA 5BXHA 3LNMB 2Z8HA 4ZOUA 2IZVC 2P1OA 3HQIA 5EUPA 3HVEA 3OHVA 4JGHC 3DRZA 1FS2B 3HVEB 4JTCB 1FQVB 2OVQA 1R28A 2C9WC 3WSOB 2P1NA 3ZNGB 3ZTCB 5BXDA 4BKTB 4AP2A 3HTMA 3OGMA 3GA1A 2OVRA 3ZRFB 4EOZA 4B9KE 5H7HA
chains in the Genus database with same CATH superfamily

2JZ3C 4ZGCA 2P1PA 5A15A 1NN7A 3BIMA 2E32B 3M52A 1DSXA 3C6OA 2FNJC 2ASSA 3LUTB 1QDVA 3B84A 4J8ZA 4U2MA 1R29A 4HXIA 5IBKA 2VPKA 2PPIA 3DRYA 4W9FB 4W9JB 4CXIA 4W9GB 3M5BA 4CRHA 2NZ0B 3OGLA 5BXBA 2R9RB 4UYIA 3FKCA 3V7DA 5BO4C 3M8VA 1P22B 4W9KB 1FS1B 4CXTA 4N9F5 4W9EB 3M4TA 4AJYC 4WQOC 4B95B 3ZRCB 1BUOA 4UIJA 4W9DB 5FTAA 1LQBB 1S1GA 4BGCA 1A68A 4I6JC 3ZKJB 1LDKD 4U77A 1R2BA 2Q81A 5HZGC 2E31B 2P1QA 3OGKA 2OVPA 4APFA 4CXJA 2IHCA 4U2NA 3LBZA 3DRXA 3OHUA 1NEXA 5HYWB 2IF5A 4W9HB 5JH5B 5LLIB 1VCBB 4YY8A 4W9HH 3L2OA 2NN2A 4CP3A 1T1DA 4JTDB 5DADA 1EXBE 3DCGB 2VKPA 5H7GA 4W9IB 2A79B 4W9CB 1CS3A 3C6NA 5A6RA 3ZUNB 5DAFA 4W9LB 2ASTA 3C6PA 3MKSA 1LM8C 4BKSB 1EODA 3HU6A 4JTAB 2I2RA 2P1MA 1QDWA 3ZTDB 4AWJB 2MA9C 3E4UA 2YY9A 4B9KB 1EOFA 3I3NA 1HV2A 1EOEA 3KVTA 5BXHA 3LNMB 2Z8HA 4ZOUA 2IZVC 2P1OA 3HQIA 5EUPA 3HVEA 3OHVA 4JGHC 3DRZA 1FS2B 3HVEB 4JTCB 1FQVB 2OVQA 1R28A 2C9WC 3WSOB 2P1NA 3ZNGB 3ZTCB 5BXDA 4BKTB 4AP2A 3HTMA 3OGMA 3GA1A 2OVRA 3ZRFB 4EOZA 4B9KE 5H7HA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2JZ3 C;  2P1P A;  5A15 A;  1NN7 A;  3BIM A;  2E32 B;  3M52 A;  1DSX A;  3C6O A;  2FNJ C;  2ASS A;  3LUT B;  1QDV A;  3B84 A;  4J8Z A;  4U2M A;  1R29 A;  4HXI A;  5IBK A;  2VPK A;  2PPI A;  4W9F B;  4W9J B;  4CXI A;  4W9G B;  3M5B A;  4CRH A;  2NZ0 B;  3OGL A;  5BXB A;  2R9R B;  4UYI A;  3FKC A;  3V7D A;  5BO4 C;  3M8V A;  1P22 B;  4W9K B;  1FS1 B;  4CXT A;  4N9F 5;  4W9E B;  3M4T A;  4AJY C;  4WQO C;  4B95 B;  3ZRC B;  1BUO A;  4UIJ A;  4W9D B;  5FTA A;  1LQB B;  1S1G A;  4BGC A;  1A68 A;  4I6J C;  3ZKJ B;  1LDK D;  4U77 A;  1R2B A;  2Q81 A;  5HZG C;  2E31 B;  2P1Q A;  3OGK A;  2OVP A;  4APF A;  4CXJ A;  2IHC A;  4U2N A;  3LBZ A;  3OHU A;  1NEX A;  5HYW B;  2IF5 A;  4W9H B;  5JH5 B;  5LLI B;  1VCB B;  4W9H H;  3L2O A;  2NN2 A;  4CP3 A;  1T1D A;  4JTD B;  5DAD A;  1EXB E;  3DCG B;  2VKP A;  5H7G A;  4W9I B;  2A79 B;  4W9C B;  1CS3 A;  3C6N A;  5A6R A;  3ZUN B;  5DAF A;  4W9L B;  2AST A;  3C6P A;  3MKS A;  1LM8 C;  4BKS B;  1EOD A;  3HU6 A;  4JTA B;  2I2R A;  2P1M A;  1QDW A;  3ZTD B;  4AWJ B;  2MA9 C;  3E4U A;  2YY9 A;  4B9K B;  1EOF A;  3I3N A;  1HV2 A;  1EOE A;  3KVT A;  5BXH A;  3LNM B;  2Z8H A;  4ZOU A;  2IZV C;  2P1O A;  3HQI A;  5EUP A;  3HVE A;  3OHV A;  4JGH C;  3DRZ A;  1FS2 B;  3HVE B;  4JTC B;  1FQV B;  2OVQ A;  1R28 A;  2C9W C;  3WSO B;  2P1N A;  3ZNG B;  3ZTC B;  5BXD A;  4BKT B;  4AP2 A;  3HTM A;  3OGM A;  3GA1 A;  2OVR A;  3ZRF B;  4EOZ A;  4B9K E;  5H7H A; 
#chains in the Genus database with same CATH topology
 2JZ3 C;  4ZGC A;  2P1P A;  5A15 A;  1NN7 A;  3BIM A;  2E32 B;  3M52 A;  1DSX A;  3C6O A;  2FNJ C;  2ASS A;  3LUT B;  1QDV A;  3B84 A;  4J8Z A;  4U2M A;  1R29 A;  4HXI A;  5IBK A;  2VPK A;  2PPI A;  3DRY A;  4W9F B;  4W9J B;  4CXI A;  4W9G B;  3M5B A;  4CRH A;  2NZ0 B;  3OGL A;  5BXB A;  2R9R B;  4UYI A;  3FKC A;  3V7D A;  5BO4 C;  3M8V A;  1P22 B;  4W9K B;  1FS1 B;  4CXT A;  4N9F 5;  4W9E B;  3M4T A;  4AJY C;  4WQO C;  4B95 B;  3ZRC B;  1BUO A;  4UIJ A;  4W9D B;  5FTA A;  1LQB B;  1S1G A;  4BGC A;  1A68 A;  4I6J C;  3ZKJ B;  1LDK D;  4U77 A;  1R2B A;  2Q81 A;  5HZG C;  2E31 B;  2P1Q A;  3OGK A;  2OVP A;  4APF A;  4CXJ A;  2IHC A;  4U2N A;  3LBZ A;  3DRX A;  3OHU A;  1NEX A;  5HYW B;  2IF5 A;  4W9H B;  5JH5 B;  5LLI B;  1VCB B;  4YY8 A;  4W9H H;  3L2O A;  2NN2 A;  4CP3 A;  1T1D A;  4JTD B;  5DAD A;  1EXB E;  3DCG B;  2VKP A;  5H7G A;  4W9I B;  2A79 B;  4W9C B;  1CS3 A;  3C6N A;  5A6R A;  3ZUN B;  5DAF A;  4W9L B;  2AST A;  3C6P A;  3MKS A;  1LM8 C;  4BKS B;  1EOD A;  3HU6 A;  4JTA B;  2I2R A;  2P1M A;  1QDW A;  3ZTD B;  4AWJ B;  2MA9 C;  3E4U A;  2YY9 A;  4B9K B;  1EOF A;  3I3N A;  1HV2 A;  1EOE A;  3KVT A;  5BXH A;  3LNM B;  2Z8H A;  4ZOU A;  2IZV C;  2P1O A;  3HQI A;  5EUP A;  3HVE A;  3OHV A;  4JGH C;  3DRZ A;  1FS2 B;  3HVE B;  4JTC B;  1FQV B;  2OVQ A;  1R28 A;  2C9W C;  3WSO B;  2P1N A;  3ZNG B;  3ZTC B;  5BXD A;  4BKT B;  4AP2 A;  3HTM A;  3OGM A;  3GA1 A;  2OVR A;  3ZRF B;  4EOZ A;  4B9K E;  5H7H A; 
#chains in the Genus database with same CATH homology
 2JZ3 C;  4ZGC A;  2P1P A;  5A15 A;  1NN7 A;  3BIM A;  2E32 B;  3M52 A;  1DSX A;  3C6O A;  2FNJ C;  2ASS A;  3LUT B;  1QDV A;  3B84 A;  4J8Z A;  4U2M A;  1R29 A;  4HXI A;  5IBK A;  2VPK A;  2PPI A;  3DRY A;  4W9F B;  4W9J B;  4CXI A;  4W9G B;  3M5B A;  4CRH A;  2NZ0 B;  3OGL A;  5BXB A;  2R9R B;  4UYI A;  3FKC A;  3V7D A;  5BO4 C;  3M8V A;  1P22 B;  4W9K B;  1FS1 B;  4CXT A;  4N9F 5;  4W9E B;  3M4T A;  4AJY C;  4WQO C;  4B95 B;  3ZRC B;  1BUO A;  4UIJ A;  4W9D B;  5FTA A;  1LQB B;  1S1G A;  4BGC A;  1A68 A;  4I6J C;  3ZKJ B;  1LDK D;  4U77 A;  1R2B A;  2Q81 A;  5HZG C;  2E31 B;  2P1Q A;  3OGK A;  2OVP A;  4APF A;  4CXJ A;  2IHC A;  4U2N A;  3LBZ A;  3DRX A;  3OHU A;  1NEX A;  5HYW B;  2IF5 A;  4W9H B;  5JH5 B;  5LLI B;  1VCB B;  4YY8 A;  4W9H H;  3L2O A;  2NN2 A;  4CP3 A;  1T1D A;  4JTD B;  5DAD A;  1EXB E;  3DCG B;  2VKP A;  5H7G A;  4W9I B;  2A79 B;  4W9C B;  1CS3 A;  3C6N A;  5A6R A;  3ZUN B;  5DAF A;  4W9L B;  2AST A;  3C6P A;  3MKS A;  1LM8 C;  4BKS B;  1EOD A;  3HU6 A;  4JTA B;  2I2R A;  2P1M A;  1QDW A;  3ZTD B;  4AWJ B;  2MA9 C;  3E4U A;  2YY9 A;  4B9K B;  1EOF A;  3I3N A;  1HV2 A;  1EOE A;  3KVT A;  5BXH A;  3LNM B;  2Z8H A;  4ZOU A;  2IZV C;  2P1O A;  3HQI A;  5EUP A;  3HVE A;  3OHV A;  4JGH C;  3DRZ A;  1FS2 B;  3HVE B;  4JTC B;  1FQV B;  2OVQ A;  1R28 A;  2C9W C;  3WSO B;  2P1N A;  3ZNG B;  3ZTC B;  5BXD A;  4BKT B;  4AP2 A;  3HTM A;  3OGM A;  3GA1 A;  2OVR A;  3ZRF B;  4EOZ A;  4B9K E;  5H7H A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5HZGC

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations