The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
40
|
sequence length |
158
|
structure length |
149
|
Chain Sequence |
PSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDNKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
KDM2B Recruitment of the Polycomb Group Complex, PRC1.1, Requires Cooperation between PCGF1 and BCORL1.
pubmed doi rcsb |
| molecule tags |
Metal binding protein/transcription
|
| source organism |
Homo sapiens
|
| molecule keywords |
Lysine-specific demethylase 2B
|
| total genus |
40
|
| structure length |
149
|
| sequence length |
158
|
| ec nomenclature | |
| pdb deposition date | 2016-04-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01466 | Skp1 | Skp1 family, dimerisation domain |
| B | PF03931 | Skp1_POZ | Skp1 family, tetramerisation domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Potassium Channel Kv1.1; Chain A | Potassium Channel Kv1.1; Chain A |
#chains in the Genus database with same CATH superfamily 5HZG C; 4J8Z A; 4W9C B; 3DCG B; 2P1M A; 1LM8 C; 3C6N A; 3ZRC B; 3ZRF B; 3HTM A; 3ZTD B; 4AWJ B; 1A68 A; 1P22 B; 2PPI A; 3FKC A; 2IF5 A; 4HXI A; 1DSX A; 2E32 B; 4W9I B; 5H7G A; 3HVE B; 5H7H A; 3WSO B; 3ZTC B; 4W9L B; 1LQB B; 1NEX A; 2R9R B; 4BKT B; 1EOF A; 2OVQ A; 1EOE A; 3ZNG B; 4CXT A; 4UYI A; 4JTA B; 5JH5 B; 1QDW A; 1R28 A; 3M8V A; 1FQV B; 1BUO A; 1CS3 A; 4W9H H; 5BXH A; 2P1P A; 2IZV C; 4U77 A; 2VKP A; 3LNM B; 2VPK A; 3DRZ A; 4W9G B; 5IBK A; 3LBZ A; 3L2O A; 1R2B A; 3I3N A; 3M4T A; 3B84 A; 4CP3 A; 2OVP A; 1LDK D; 2MA9 C; 5BXB A; 4U2N A; 3M52 A; 4AJY C; 3E4U A; 2C9W C; 1T1D A; 2ASS A; 2NN2 A; 3HU6 A; 4JTC B; 2IHC A; 4JTD B; 5BXD A; 2NZ0 B; 3ZUN B; 5LLI B; 2FNJ C; 5A15 A; 1EOD A; 3KVT A; 5DAD A; 2OVR A; 4APF A; 1NN7 A; 1R29 A; 4W9H B; 4WQO C; 4I6J C; 2P1Q A; 5FTA A; 2Q81 A; 5EUP A; 2Z8H A; 4AP2 A; 3OGK A; 4BGC A; 4JGH C; 1EXB E; 4U2M A; 4W9K B; 1FS1 B; 4W9F B; 3OHV A; 4CRH A; 2A79 B; 3HVE A; 1VCB B; 2E31 B; 1FS2 B; 4W9E B; 4UIJ A; 1S1G A; 1QDV A; 4ZOU A; 4B95 B; 4CXJ A; 3BIM A; 2AST A; 3OHU A; 5DAF A; 3OGM A; 2JZ3 C; 3HQI A; 4W9D B; 2YY9 A; 3V7D A; 5BO4 C; 2P1N A; 4CXI A; 4N9F 5; 3C6P A; 2P1O A; 1HV2 A; 3GA1 A; 3M5B A; 3LUT B; 4W9J B; 3C6O A; 4EOZ A; 3MKS A; 2I2R A; 4BKS B; 3OGL A; 5A6R A; 4B9K E; 4B9K B; 3ZKJ B; 5HYW B; #chains in the Genus database with same CATH topology 5HZG C; 4J8Z A; 4W9C B; 3DCG B; 2P1M A; 1LM8 C; 3C6N A; 3ZRC B; 3ZRF B; 3HTM A; 3ZTD B; 4AWJ B; 1A68 A; 1P22 B; 4ZGC A; 2PPI A; 3FKC A; 2IF5 A; 4HXI A; 1DSX A; 2E32 B; 4W9I B; 5H7G A; 3HVE B; 5H7H A; 3WSO B; 3ZTC B; 4W9L B; 1LQB B; 1NEX A; 2R9R B; 4BKT B; 1EOF A; 2OVQ A; 1EOE A; 3ZNG B; 4CXT A; 4UYI A; 4JTA B; 5JH5 B; 1QDW A; 1R28 A; 3M8V A; 1FQV B; 1BUO A; 1CS3 A; 4W9H H; 5BXH A; 2P1P A; 2IZV C; 4U77 A; 2VKP A; 3LNM B; 2VPK A; 3DRZ A; 4W9G B; 5IBK A; 3LBZ A; 3L2O A; 1R2B A; 3I3N A; 3M4T A; 3B84 A; 4CP3 A; 2OVP A; 1LDK D; 2MA9 C; 5BXB A; 4U2N A; 3M52 A; 4AJY C; 3E4U A; 2C9W C; 1T1D A; 2ASS A; 2NN2 A; 3HU6 A; 4JTC B; 2IHC A; 3DRY A; 4JTD B; 5BXD A; 2NZ0 B; 3ZUN B; 5LLI B; 2FNJ C; 5A15 A; 3DRX A; 1EOD A; 3KVT A; 5DAD A; 2OVR A; 4APF A; 1NN7 A; 1R29 A; 4W9H B; 4WQO C; 4I6J C; 2P1Q A; 5FTA A; 2Q81 A; 5EUP A; 2Z8H A; 4AP2 A; 3OGK A; 4BGC A; 4JGH C; 1EXB E; 4U2M A; 4W9K B; 1FS1 B; 4W9F B; 3OHV A; 4CRH A; 2A79 B; 3HVE A; 1VCB B; 2E31 B; 1FS2 B; 4W9E B; 4UIJ A; 1S1G A; 1QDV A; 4ZOU A; 4B95 B; 4CXJ A; 3BIM A; 2AST A; 3OHU A; 5DAF A; 3OGM A; 2JZ3 C; 3HQI A; 4W9D B; 2YY9 A; 3V7D A; 5BO4 C; 2P1N A; 4CXI A; 4N9F 5; 4YY8 A; 3C6P A; 2P1O A; 1HV2 A; 3GA1 A; 3M5B A; 3LUT B; 4W9J B; 3C6O A; 4EOZ A; 3MKS A; 2I2R A; 4BKS B; 3OGL A; 5A6R A; 4B9K E; 4B9K B; 3ZKJ B; 5HYW B; #chains in the Genus database with same CATH homology 5HZG C; 4J8Z A; 4W9C B; 3DCG B; 2P1M A; 1LM8 C; 3C6N A; 3ZRC B; 3ZRF B; 3HTM A; 3ZTD B; 4AWJ B; 1A68 A; 1P22 B; 4ZGC A; 2PPI A; 3FKC A; 2IF5 A; 4HXI A; 1DSX A; 2E32 B; 4W9I B; 5H7G A; 3HVE B; 5H7H A; 3WSO B; 3ZTC B; 4W9L B; 1LQB B; 1NEX A; 2R9R B; 4BKT B; 1EOF A; 2OVQ A; 1EOE A; 3ZNG B; 4CXT A; 4UYI A; 4JTA B; 5JH5 B; 1QDW A; 1R28 A; 3M8V A; 1FQV B; 1BUO A; 1CS3 A; 4W9H H; 5BXH A; 2P1P A; 2IZV C; 4U77 A; 2VKP A; 3LNM B; 2VPK A; 3DRZ A; 4W9G B; 5IBK A; 3LBZ A; 3L2O A; 1R2B A; 3I3N A; 3M4T A; 3B84 A; 4CP3 A; 2OVP A; 1LDK D; 2MA9 C; 5BXB A; 4U2N A; 3M52 A; 4AJY C; 3E4U A; 2C9W C; 1T1D A; 2ASS A; 2NN2 A; 3HU6 A; 4JTC B; 2IHC A; 3DRY A; 4JTD B; 5BXD A; 2NZ0 B; 3ZUN B; 5LLI B; 2FNJ C; 5A15 A; 3DRX A; 1EOD A; 3KVT A; 5DAD A; 2OVR A; 4APF A; 1NN7 A; 1R29 A; 4W9H B; 4WQO C; 4I6J C; 2P1Q A; 5FTA A; 2Q81 A; 5EUP A; 2Z8H A; 4AP2 A; 3OGK A; 4BGC A; 4JGH C; 1EXB E; 4U2M A; 4W9K B; 1FS1 B; 4W9F B; 3OHV A; 4CRH A; 2A79 B; 3HVE A; 1VCB B; 2E31 B; 1FS2 B; 4W9E B; 4UIJ A; 1S1G A; 1QDV A; 4ZOU A; 4B95 B; 4CXJ A; 3BIM A; 2AST A; 3OHU A; 5DAF A; 3OGM A; 2JZ3 C; 3HQI A; 4W9D B; 2YY9 A; 3V7D A; 5BO4 C; 2P1N A; 4CXI A; 4N9F 5; 4YY8 A; 3C6P A; 2P1O A; 1HV2 A; 3GA1 A; 3M5B A; 3LUT B; 4W9J B; 3C6O A; 4EOZ A; 3MKS A; 2I2R A; 4BKS B; 3OGL A; 5A6R A; 4B9K E; 4B9K B; 3ZKJ B; 5HYW B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
