The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
102
|
sequence length |
367
|
structure length |
359
|
Chain Sequence |
APKHPGKVFLDPSEVADHLAEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGADAYVINGGFQACKAAGLEMESGEPSSLPRPATHWPFKTAFQHHYLVDEIPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQADLSSFVFSGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRSIIDDYGMCMQMQTPSLGDNPKANLDTMTLKVDGAPERPDAEVQSAATHLHAGEAATVYFKSGRVVTIEVPVVPNLEA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal Structure of Leishmania Major 3-Mercaptopyruvate Sulfurtransferase: A Three-Domain Architecture with a Serine Protease-Like Triad at the Active Site
pubmed doi rcsb |
| molecule keywords |
POSSIBLE 3-MERCAPTOPYRUVATE SULFURTRANSFERASE
|
| molecule tags |
Transferase
|
| source organism |
Leishmania major
|
| total genus |
102
|
| structure length |
359
|
| sequence length |
367
|
| ec nomenclature |
ec
2.8.1.2: 3-mercaptopyruvate sulfurtransferase. |
| pdb deposition date | 2003-07-24 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00581 | Rhodanese | Rhodanese-like domain |
| A | PF09122 | DUF1930 | Domain of unknown function (DUF1930) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | 3-mercaptopyruvate sulfurtransferase, domain 3 | 3-mercaptopyruvate sulfurtransferase, domain 3 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Oxidized Rhodanese; domain 1 | Rhodanese-like domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Oxidized Rhodanese; domain 1 | Rhodanese-like domain |
#chains in the Genus database with same CATH superfamily 2DCQ A; 4OCG A; 2JTR A; 1YS0 A; 2MRM A; 2JTS A; 1WV9 A; 3OLH A; 5HPA A; 4JGT A; 3ICR A; 2EG4 A; 3NHV A; 4WH7 A; 3TP9 A; 1DP2 A; 5HBP A; 1YMK A; 1H4K X; 3OP3 A; 1URH A; 2A2K A; 2WLX A; 3NTA A; 2EG4 B; 2OUC A; 2IFV A; 1GMX A; 3P3A A; 1C25 A; 3TG3 A; 3I3U A; 2GWF A; 1YML A; 3HZU A; 5HBO A; 1CWS A; 3FNJ A; 1TQ1 A; 3HWI A; 2MOI A; 1QB0 A; 2FSX A; 2J6P A; 1YT8 A; 3R2U A; 3TG1 B; 5LAM A; 1CWR A; 1ORB A; 3AAY A; 2IFD A; 3ILM A; 3I2V A; 2MOL A; 2ORA A; 2UZQ A; 1RHD A; 1YMD A; 2KL3 A; 1BOH A; 2JTQ A; 3IPO A; 5HBQ A; 1T3K A; 1BOI A; 4F67 A; 3NTD A; 3D1P A; 3IWH A; 3UTN X; 3IPP A; 1GN0 A; 2HHG A; 2WLR A; 1YM9 A; 3G5J A; 3NT6 A; 1HZM A; 1E0C A; 2EG3 A; 3F4A A; 1WHB A; 3ICS A; 1UAR A; 3O3W A; 5HBL A; 5LAO A; 1QXN A; 1VEE A; 3GK5 A; 3K9R A; 4WH9 A; 1RHS A; 3ICT A; 2K0Z A; 3AAX A; 3FLH A; 1CWT A; 3FS5 A; 1H4M X; 1OKG A; 3FOJ A; 2VSW A; 3MZZ A; 3HIX A; #chains in the Genus database with same CATH topology 2DCQ A; 4OCG A; 2JTR A; 1YS0 A; 2MRM A; 2JTS A; 1WV9 A; 3OLH A; 5HPA A; 4JGT A; 3ICR A; 2EG4 A; 3NHV A; 4WH7 A; 3TP9 A; 1DP2 A; 5HBP A; 1YMK A; 1H4K X; 3OP3 A; 1URH A; 2A2K A; 2WLX A; 3NTA A; 2EG4 B; 2OUC A; 2IFV A; 1GMX A; 3P3A A; 1C25 A; 3TG3 A; 3I3U A; 2GWF A; 1YML A; 3HZU A; 5HBO A; 1CWS A; 3FNJ A; 1TQ1 A; 3HWI A; 2MOI A; 1QB0 A; 2FSX A; 2J6P A; 1YT8 A; 3R2U A; 3TG1 B; 5LAM A; 1CWR A; 1ORB A; 3AAY A; 2IFD A; 3ILM A; 3I2V A; 2MOL A; 2ORA A; 2UZQ A; 1RHD A; 1YMD A; 2KL3 A; 1BOH A; 2JTQ A; 3IPO A; 5HBQ A; 1T3K A; 1BOI A; 4F67 A; 3NTD A; 3D1P A; 3IWH A; 3UTN X; 3IPP A; 1GN0 A; 2HHG A; 2WLR A; 1YM9 A; 3G5J A; 3NT6 A; 1HZM A; 1E0C A; 2EG3 A; 3F4A A; 1WHB A; 3ICS A; 1UAR A; 3O3W A; 2Q82 A; 5HBL A; 5LAO A; 3JYM A; 1QXN A; 1VEE A; 3GK5 A; 3K9R A; 4WH9 A; 1RHS A; 3ICT A; 2K0Z A; 3AAX A; 3FLH A; 1CWT A; 3FS5 A; 1H4M X; 1OKG A; 3FOJ A; 2VSW A; 3MZZ A; 3HIX A; #chains in the Genus database with same CATH homology 2DCQ A; 4OCG A; 2JTR A; 1YS0 A; 2MRM A; 2JTS A; 1WV9 A; 3OLH A; 5HPA A; 4JGT A; 3ICR A; 2EG4 A; 3NHV A; 4WH7 A; 3TP9 A; 1DP2 A; 5HBP A; 1YMK A; 1H4K X; 3OP3 A; 1URH A; 2A2K A; 2WLX A; 3NTA A; 2EG4 B; 2OUC A; 2IFV A; 1GMX A; 3P3A A; 1C25 A; 3TG3 A; 3I3U A; 2GWF A; 1YML A; 3HZU A; 5HBO A; 1CWS A; 3FNJ A; 1TQ1 A; 3HWI A; 2MOI A; 1QB0 A; 2FSX A; 2J6P A; 1YT8 A; 3R2U A; 3TG1 B; 5LAM A; 1CWR A; 1ORB A; 3AAY A; 2IFD A; 3ILM A; 3I2V A; 2MOL A; 2ORA A; 2UZQ A; 1RHD A; 1YMD A; 2KL3 A; 1BOH A; 2JTQ A; 3IPO A; 5HBQ A; 1T3K A; 1BOI A; 4F67 A; 3NTD A; 3D1P A; 3IWH A; 3UTN X; 3IPP A; 1GN0 A; 2HHG A; 2WLR A; 1YM9 A; 3G5J A; 3NT6 A; 1HZM A; 1E0C A; 2EG3 A; 3F4A A; 1WHB A; 3ICS A; 1UAR A; 3O3W A; 5HBL A; 5LAO A; 3JYM A; 1QXN A; 1VEE A; 3GK5 A; 3K9R A; 4WH9 A; 1RHS A; 3ICT A; 2K0Z A; 3AAX A; 3FLH A; 1CWT A; 3FS5 A; 1H4M X; 1OKG A; 3FOJ A; 2VSW A; 3MZZ A; 3HIX A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
