The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
58
|
sequence length |
172
|
structure length |
170
|
Chain Sequence |
ILNCSALPCLLHLLSSPKESIRKEACWTVSNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVALGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQESKQIGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Viral protein
|
| molecule keywords |
Membrane-associated protein VP24
|
| publication title |
Ebola Virus VP24 Targets a Unique NLS Binding Site on Karyopherin Alpha 5 to Selectively Compete with Nuclear Import of Phosphorylated STAT1.
pubmed doi rcsb |
| source organism |
Zaire ebolavirus
|
| total genus |
58
|
| structure length |
170
|
| sequence length |
172
|
| chains with identical sequence |
E, F
|
| ec nomenclature | |
| pdb deposition date | 2014-07-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| D | PF00514 | Arm | Armadillo/beta-catenin-like repeat |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Alpha Horseshoe | Leucine-rich Repeat Variant | Leucine-rich Repeat Variant |
#chains in the Genus database with same CATH superfamily 4JW3 C; 4U2X D; 3SL9 A; 4JW2 A; 1TE4 A; 3SLA A; #chains in the Genus database with same CATH topology 5LSW A; 3L3F X; 5CLB A; 1UPL A; 4UAE A; 5FC8 E; 4Y5J A; 4P6Z G; 3GVO A; 4R0Z A; 5KL1 A; 2NYL B; 2RU4 B; 5CL5 A; 1LRV A; 3UJ0 A; 4CT6 B; 1T08 A; 3T7U A; 1I7X A; 4BA3 A; 5H2W A; 1Q1S C; 3GB8 A; 4U5U A; 1IB2 A; 4MFU A; 5D5K C; 2OF3 A; 3ZKV A; 3SLA A; 1QBK B; 4QMJ A; 5CL3 A; 3JXY A; 2C1T A; 3TJ3 A; 4QMH A; 3Q0Q A; 4MZ6 E; 2Z5J A; 2VGL B; 4I3N A; 1XQR A; 1Q1T C; 4D4E A; 4UWX A; 3K7W A; 3ZIL A; 4EV8 A; 4RXH B; 2NPP A; 3ZIN A; 1BK6 A; 2JKR A; 3ND2 A; 4DVG B; 1G3J A; 4JW3 C; 3K5Y A; 4DZS A; 4I96 A; 2PKG A; 3BCT A; 3GQ2 A; 3L6Y A; 3K7V A; 2C1M A; 3ZHP A; 5CLC A; 4MFV A; 5EKF A; 3JY1 A; 3Q0S A; 4V3O A; 3K64 A; 2Z6H A; 3O2S A; 1O6O A; 1WA5 B; 1QZ7 A; 4TNM A; 3C5W A; 4QMI A; 1F59 A; 3JX7 A; 5CL6 A; 2QMR A; 3QHE A; 4YI0 C; 1XQS A; 4U5N A; 1M8Z A; 2Z5M A; 3ZIQ A; 4PLQ A; 4PVZ A; 2Z5N A; 2BAP A; 2GL7 A; 4DJS A; 3ZIK A; 3QGB A; 5HHG E; 3VLD A; 4FZD A; 4JW2 A; 1UKL A; 1W9C A; 3VLF A; 3NOW A; 1I7W A; 2XA7 B; 2YNS A; 4I8M A; 3AU3 A; 3K5Z A; 4I2W A; 3DAD A; 4KZG A; 3V74 A; 4CV5 B; 3QGC A; 2W3C A; 1UN0 A; 2Z5K A; 4I5L A; 4IMI A; 5BZU A; 4OO6 A; 4I2S A; 4HTV A; 2IW3 A; 4H3K A; 2H4M A; 5KLR B; 1V18 A; 3H3D X; 3FGA A; 5HUW C; 1M8Y A; 4U54 A; 5H2X A; 4MZ5 E; 2X19 B; 4I0Y A; 5K6S A; 2BKU B; 2IAE B; 3Q0R A; 1M1E A; 3NMW A; 3ZIO A; 4O27 A; 5SW9 A; 3GS3 A; 5HUY C; 3Q0M A; 5CLD A; 5CL4 A; 2NYM B; 3QML C; 3FEY C; 3K4E A; 3PSP A; 2QK1 A; 3BSB A; 4EV9 A; 5KLT B; 2YJY A; 3GAE A; 3UVU A; 4BPL A; 3OPB A; 4A3V A; 1IBR B; 4GMO A; 3K49 A; 1WA5 C; 1PJN B; 4E4V A; 4JLQ A; 5E6Q B; 3BSX A; 4NEE A; 4B8P A; 4YK6 A; 1QGK A; 1IQ1 C; 2QK2 A; 3NMX A; 4U5L A; 3LTM A; 3JXZ A; 3A6P A; 4UQI A; 4I2Z A; 3LWW A; 4H3H A; 1QGR A; 4G3A A; 2JKT B; 3Q5U A; 3L6X A; 2X1G F; 4EVP A; 5EKG A; 5CLA A; 3ODS A; 4I37 A; 5SWF A; 4V3Q A; 4U5V A; 3UJ4 A; 5CLE A; 1HO8 A; 4FZA A; 4UAD A; 4FZF A; 3UKZ B; 4DB8 A; 2NYL A; 2IE3 A; 2RU4 A; 3TX7 A; 3DW8 A; 1EE4 A; 1JPW A; 4CB9 A; 1PJM B; 1JPP A; 4U5S A; 3LTJ A; 4EVT A; 4HNM A; 4A0C A; 5BZ1 A; 3IBV A; 3C2G A; 4ZDU A; 3UL0 B; 3Q0N A; 5AEI A; 5JJA A; 4R10 A; 4CB8 A; 1M5N S; 4RZP A; 2VGL A; 2BNX A; 3TJZ B; 3RZX A; 4D49 A; 4I7I A; 2F31 A; 3TPO A; 3NMZ A; 3K5Q A; 4DB6 A; 1B3U A; 5CL8 A; 4UAF B; 5K9S A; 2NPP B; 4DB9 A; 2JKR B; 3WOY A; 4FFB C; 2QNA A; 5CL7 A; 3BX3 A; 4A3T A; 4U3J C; 1EE5 A; 2FV2 A; 3K62 A; 1LSH A; 4B8J A; 3RZ9 A; 5B56 A; 1M8W A; 3GRL A; 4B8O A; 5BZV A; 3T8S A; 3TT9 A; 4ADY A; 2IWH A; 3WOZ A; 3EA5 B; 4FDD A; 1UPK A; 3BVS A; 4K92 A; 4V3R A; 3V71 A; 4I5N A; 4XZR B; 4YJL A; 3C2H A; 3EBB A; 4JKQ A; 1OYZ A; 3SL9 A; 2WTK A; 5KUB A; 3ZIP A; 2XOA A; 1N4K A; 1LUJ A; 5CTT A; 4CT7 B; 4PLR A; 4GMN A; 4JW2 B; 3V6Y A; 5KL8 A; 4IMJ A; 1Z2C B; 1TH1 A; 4HXT A; 1W63 A; 3Q0L A; 1TE4 A; 3BWT A; 5J3V A; 4L4H A; 2XA7 A; 3W3U A; 1M8X A; 4U2X D; 4U5O A; 4DBA A; 1Y2A C; 4I6I A; 4BQK A; 3TPM A; 4CBA A; 2Q5D A; 4L7M A; 4CRV B; 5BZ5 A; 4FP7 A; 3KND A; 1EJL I; 3FGA B; 3OUX A; 4FQ3 A; 3VE6 A; 4R11 A; 4P6Z B; 3OBV A; 5EWP A; 5DN7 A; 5BYM A; 1U6G C; 3GVT A; 4HM9 A; 4PLS A; 1EJY I; 5KLA A; 3OQS A; 2BCT A; 2IAE A; 2IX3 A; 1BK5 A; 4LAC A; 3O2T A; 4B18 A; 1XM9 A; 3WPT A; 2NYM A; 3L3Q A; 4NZW A; 3UKY B; 3BX2 A; 2IE4 A; 3PST A; 2P8Q A; 3O2Q A; 4L4I A; 3WYF C; 3UKX B; 4RV1 A; 5CL9 A; 3O4X A; 3Q0P A; 3K61 A; 3VLE A; 3UKW B; 2YNR A; 2PF4 A; 3OUW A; 4WV6 A; 4YGX A; 2JAK A; 3ZIR A; 3BTR C; 2OT8 A; 4EVA A; 2Z5O A; 1W63 B; 4OIH A; 2DB0 A; 4UQI B; 5SVZ A; 3ODR A; 3GNI A; 3QG9 A; 4YJE A; 4I1E A; 3Q0O A; 1JDH A; 2JDQ A; 3VWA A; 1O6P A; 3IFQ A; 2Z6G A; 1IAL A; 4K6J A; 1GCJ A; 3FEX C; 2JKT A; 4U58 A; 3EG5 B; 4CRU B; 3UL1 B; #chains in the Genus database with same CATH homology 5LSW A; 3L3F X; 5CLB A; 1UPL A; 4UAE A; 5FC8 E; 4Y5J A; 4P6Z G; 3GVO A; 4R0Z A; 5KL1 A; 2NYL B; 2RU4 B; 5CL5 A; 1LRV A; 4CT6 B; 1T08 A; 3T7U A; 1I7X A; 4BA3 A; 5H2W A; 1Q1S C; 3GB8 A; 4U5U A; 1IB2 A; 4MFU A; 5D5K C; 2OF3 A; 3ZKV A; 3SLA A; 1QBK B; 4QMJ A; 5CL3 A; 3JXY A; 2C1T A; 3TJ3 A; 4QMH A; 3Q0Q A; 4MZ6 E; 2Z5J A; 2VGL B; 4I3N A; 1XQR A; 1Q1T C; 4D4E A; 4UWX A; 3K7W A; 3ZIL A; 4EV8 A; 4RXH B; 2NPP A; 3ZIN A; 1BK6 A; 2JKR A; 3ND2 A; 4DVG B; 1G3J A; 4JW3 C; 3K5Y A; 4DZS A; 4I96 A; 2PKG A; 3BCT A; 3GQ2 A; 3L6Y A; 3K7V A; 2C1M A; 3ZHP A; 5CLC A; 4MFV A; 5EKF A; 3JY1 A; 3Q0S A; 4V3O A; 3K64 A; 2Z6H A; 3O2S A; 1O6O A; 1WA5 B; 1QZ7 A; 4TNM A; 3C5W A; 4QMI A; 1F59 A; 3JX7 A; 5CL6 A; 2QMR A; 3QHE A; 4YI0 C; 1XQS A; 4U5N A; 1M8Z A; 2Z5M A; 3ZIQ A; 4PLQ A; 4PVZ A; 2Z5N A; 2BAP A; 2GL7 A; 4DJS A; 3ZIK A; 3QGB A; 5HHG E; 3VLD A; 4FZD A; 4JW2 A; 1UKL A; 1W9C A; 3VLF A; 3NOW A; 1I7W A; 2XA7 B; 2YNS A; 4I8M A; 3AU3 A; 3K5Z A; 4I2W A; 3DAD A; 4KZG A; 3V74 A; 4CV5 B; 3QGC A; 2W3C A; 1UN0 A; 2Z5K A; 4I5L A; 4IMI A; 5BZU A; 4OO6 A; 4I2S A; 4HTV A; 2IW3 A; 4H3K A; 2H4M A; 5KLR B; 1V18 A; 3H3D X; 3FGA A; 5HUW C; 1M8Y A; 4U54 A; 5H2X A; 4MZ5 E; 2X19 B; 4I0Y A; 5K6S A; 2BKU B; 2IAE B; 3Q0R A; 1M1E A; 3NMW A; 3ZIO A; 4O27 A; 5SW9 A; 3GS3 A; 5HUY C; 3Q0M A; 5CLD A; 5CL4 A; 2NYM B; 3QML C; 3FEY C; 3K4E A; 3PSP A; 2QK1 A; 3BSB A; 4EV9 A; 5KLT B; 2YJY A; 3GAE A; 3UVU A; 4BPL A; 3OPB A; 4A3V A; 1IBR B; 4GMO A; 3K49 A; 1WA5 C; 1PJN B; 4E4V A; 4JLQ A; 5E6Q B; 3BSX A; 4NEE A; 4B8P A; 4YK6 A; 1QGK A; 1IQ1 C; 2QK2 A; 3NMX A; 4U5L A; 3LTM A; 3JXZ A; 3A6P A; 4UQI A; 4I2Z A; 3LWW A; 4H3H A; 1QGR A; 4G3A A; 2JKT B; 3Q5U A; 3L6X A; 2X1G F; 4EVP A; 5EKG A; 5CLA A; 3ODS A; 4I37 A; 5SWF A; 4V3Q A; 4U5V A; 5CLE A; 1HO8 A; 4FZA A; 4UAD A; 4FZF A; 3UKZ B; 4DB8 A; 2NYL A; 2IE3 A; 2RU4 A; 3TX7 A; 3DW8 A; 1EE4 A; 1JPW A; 4CB9 A; 1PJM B; 1JPP A; 4U5S A; 3LTJ A; 4EVT A; 4HNM A; 4A0C A; 5BZ1 A; 3IBV A; 3C2G A; 4ZDU A; 3UL0 B; 3Q0N A; 5AEI A; 5JJA A; 4R10 A; 4CB8 A; 1M5N S; 4RZP A; 2VGL A; 2BNX A; 3TJZ B; 3RZX A; 4D49 A; 4I7I A; 2F31 A; 3TPO A; 3NMZ A; 3K5Q A; 4DB6 A; 1B3U A; 5CL8 A; 4UAF B; 5K9S A; 2NPP B; 4DB9 A; 2JKR B; 3WOY A; 4FFB C; 2QNA A; 5CL7 A; 3BX3 A; 4A3T A; 4U3J C; 1EE5 A; 2FV2 A; 3K62 A; 4B8J A; 3RZ9 A; 5B56 A; 1M8W A; 3GRL A; 4B8O A; 5BZV A; 3TT9 A; 4ADY A; 3WOZ A; 2IWH A; 3EA5 B; 4FDD A; 1UPK A; 3BVS A; 4K92 A; 4V3R A; 3V71 A; 4I5N A; 4XZR B; 4YJL A; 3C2H A; 3EBB A; 4JKQ A; 1OYZ A; 3SL9 A; 2WTK A; 5KUB A; 3ZIP A; 2XOA A; 1LUJ A; 4CT7 B; 5CTT A; 4PLR A; 4GMN A; 4JW2 B; 3V6Y A; 5KL8 A; 4IMJ A; 1Z2C B; 1TH1 A; 4HXT A; 1W63 A; 3Q0L A; 1TE4 A; 3BWT A; 5J3V A; 4L4H A; 2XA7 A; 3W3U A; 1M8X A; 4U2X D; 4U5O A; 4DBA A; 1Y2A C; 4I6I A; 4BQK A; 3TPM A; 4CBA A; 2Q5D A; 4L7M A; 4CRV B; 5BZ5 A; 4FP7 A; 3KND A; 1EJL I; 3FGA B; 3OUX A; 4FQ3 A; 3VE6 A; 4R11 A; 4P6Z B; 3OBV A; 5EWP A; 5DN7 A; 5BYM A; 1U6G C; 3GVT A; 4HM9 A; 4PLS A; 1EJY I; 5KLA A; 3OQS A; 2BCT A; 2IAE A; 2IX3 A; 1BK5 A; 4LAC A; 3O2T A; 4B18 A; 1XM9 A; 3WPT A; 2NYM A; 3L3Q A; 4NZW A; 3UKY B; 3BX2 A; 2IE4 A; 3PST A; 2P8Q A; 3O2Q A; 4L4I A; 3WYF C; 3UKX B; 4RV1 A; 5CL9 A; 3O4X A; 3Q0P A; 3K61 A; 3VLE A; 3UKW B; 2YNR A; 2PF4 A; 3OUW A; 4WV6 A; 4YGX A; 2JAK A; 3ZIR A; 3BTR C; 2OT8 A; 4EVA A; 2Z5O A; 1W63 B; 4OIH A; 2DB0 A; 4UQI B; 5SVZ A; 3ODR A; 3GNI A; 3QG9 A; 4YJE A; 4I1E A; 3Q0O A; 1JDH A; 2JDQ A; 3VWA A; 1O6P A; 3IFQ A; 2Z6G A; 1IAL A; 4K6J A; 1GCJ A; 3FEX C; 2JKT A; 4U58 A; 3EG5 B; 4CRU B; 3UL1 B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
