The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
101
|
sequence length |
294
|
structure length |
294
|
Chain Sequence |
MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure of the cytidine deaminase-product complex provides evidence for efficient proton transfer and ground-state destabilization.
pubmed doi rcsb |
| molecule keywords |
CYTIDINE DEAMINASE
|
| molecule tags |
Complex (hydrolase/product)
|
| source organism |
Escherichia coli
|
| total genus |
101
|
| structure length |
294
|
| sequence length |
294
|
| ec nomenclature |
ec
3.5.4.5: Cytidine deaminase. |
| pdb deposition date | 1997-03-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region |
| A | PF08211 | dCMP_cyt_deam_2 | Cytidine and deoxycytidylate deaminase zinc-binding region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 2P87 A; 1OX7 A; 3B8F A; 2NYT A; 4EG2 A; 3DH1 A; 2FR6 A; 4MSQ A; 4BGD C; 1OI0 A; 4MSD A; 1WKQ A; 1WN5 A; 3EX8 A; 2Z3G A; 2B3J A; 4E0Q A; 3R2N A; 1ALN A; 2KKS A; 2O95 A; 5M52 C; 4OCL B; 1JTK A; 2P8R A; 4WIF A; 3ZPC A; 2QLC A; 4LCN A; 4PQT A; 4LD2 A; 4OCL A; 1MQ0 A; 2KCQ A; 1P6O A; 2G6V A; 1R5T A; 1Z3A A; 4JXE A; 3RZV A; 2PW9 A; 4F3W A; 2W4L A; 4G3M A; 4O8X B; 1WN6 A; 2G84 A; 4OCN B; 4K1R A; 2HXV A; 4NQL A; 4OCM B; 5GAO A; 5DCA J; 4I43 B; 3RZU A; 4LCO A; 4O8X A; 4OCN A; 4OCM A; 5C2O A; 1AF2 A; 3OCQ A; 2OG4 A; 2A8N A; 4F7O A; 4ILG C; 3MPZ A; 2FR5 A; 1UWZ A; 2Z3H A; 2NX8 A; 4HRW A; 1WWR A; 4P9D A; 1VQ2 A; 1UX1 A; 3E1U A; 3ZPG A; 4HRQ A; 4ZFR A; 4OWP B; 4ZD5 A; 2O3K A; 4ZFT A; 4MS7 A; 1R5X A; 1UX0 A; 4OWP A; 2ZNV A; 1RB7 A; 2Z3I A; 4D10 F; 3OJ6 A; 1ZAB A; 2Z3J A; 1UAQ A; 4O8Y B; 2OBC A; 5M59 B; 2HVW A; 2ZNR A; 2HVV A; 3ZEF B; 4MSJ A; 4P9E A; 1CTU A; 4O8Y A; 1YSB A; 2D30 A; 4LC5 A; 2O96 A; 3IJF X; 1TIY A; 1YSD A; 2B3Z A; 5CW6 A; 2D5N A; 4QFT A; 4ZD4 A; 2RPZ A; 1CTT A; 4KIT C; 4LCP A; 4P9C A; 4MSM A; 3DMO A; 3G8Q A; 3SBG A; 2O7P A; 4LD4 A; 4WIG A; #chains in the Genus database with same CATH topology 2P87 A; 1OX7 A; 3B8F A; 2NYT A; 4EG2 A; 3DH1 A; 2FR6 A; 4MSQ A; 4BGD C; 1OI0 A; 4MSD A; 1WKQ A; 1WN5 A; 3EX8 A; 2Z3G A; 2B3J A; 3ZZM A; 4E0Q A; 3R2N A; 4GGM X; 1ALN A; 2KKS A; 2O95 A; 5M52 C; 4OCL B; 1JTK A; 2P8R A; 4WIF A; 3ZPC A; 2QLC A; 4LCN A; 4PQT A; 4LD2 A; 4OCL A; 1MQ0 A; 2KCQ A; 1P6O A; 2G6V A; 1R5T A; 2IU3 A; 1Z3A A; 1G8M A; 4A1O A; 4JXE A; 3RZV A; 2PW9 A; 4EHI A; 1PKX A; 4F3W A; 2W4L A; 4G3M A; 4O8X B; 1WN6 A; 2G84 A; 4OCN B; 4K1R A; 2HXV A; 4NQL A; 4OCM B; 5GAO A; 5DCA J; 4I43 B; 3RZU A; 4LCO A; 4O8X A; 1THZ A; 4OCN A; 4OCM A; 5C2O A; 1AF2 A; 3OCQ A; 2OG4 A; 2A8N A; 4F7O A; 4ILG C; 1PL0 A; 2FR5 A; 2NX8 A; 1UWZ A; 2Z3H A; 3MPZ A; 4HRW A; 1WWR A; 4P9D A; 1VQ2 A; 3VX8 A; 1UX1 A; 1VK9 A; 3E1U A; 3ZPG A; 4HRQ A; 1P4R A; 4OWP B; 4ZFR A; 4ZD5 A; 2O3K A; 4ZFT A; 4J6E A; 2B1I A; 3BH1 A; 4MS7 A; 1R5X A; 1UX0 A; 4OWP A; 2ZNV A; 1RB7 A; 2Z3I A; 4D10 F; 3OJ6 A; 1ZAB A; 2Z3J A; 1UAQ A; 4O8Y B; 2OBC A; 5M59 B; 2HVW A; 2ZNR A; 2B1G A; 2HVV A; 3ZEF B; 1ZCZ A; 4MSJ A; 4P9E A; 1CTU A; 4O8Y A; 1YSB A; 2D30 A; 4LC5 A; 2O96 A; 3IJF X; 1TIY A; 1YSD A; 2B3Z A; 5CW6 A; 2D5N A; 4QFT A; 4ZD4 A; 2RPZ A; 1CTT A; 4KIT C; 1OZ0 A; 4LCP A; 2IU0 A; 4P9C A; 4MSM A; 3DMO A; 3G8Q A; 3SBG A; 1M9N A; 2O7P A; 4LD4 A; 4WIG A; #chains in the Genus database with same CATH homology 2P87 A; 1OX7 A; 3B8F A; 2NYT A; 4EG2 A; 3DH1 A; 2FR6 A; 4MSQ A; 4BGD C; 1OI0 A; 4MSD A; 1WKQ A; 1WN5 A; 3EX8 A; 2Z3G A; 2B3J A; 4E0Q A; 3R2N A; 1ALN A; 2KKS A; 2O95 A; 5M52 C; 4OCL B; 1JTK A; 2P8R A; 4WIF A; 3ZPC A; 2QLC A; 4LCN A; 4PQT A; 4LD2 A; 4OCL A; 1MQ0 A; 2KCQ A; 1P6O A; 2G6V A; 1R5T A; 1Z3A A; 4JXE A; 3RZV A; 2PW9 A; 4F3W A; 2W4L A; 4G3M A; 4O8X B; 1WN6 A; 2G84 A; 4OCN B; 4K1R A; 2HXV A; 4NQL A; 4OCM B; 5GAO A; 5DCA J; 4I43 B; 3RZU A; 4LCO A; 4O8X A; 4OCN A; 4OCM A; 5C2O A; 1AF2 A; 3OCQ A; 2OG4 A; 2A8N A; 4F7O A; 4ILG C; 3MPZ A; 2FR5 A; 1UWZ A; 2Z3H A; 2NX8 A; 4HRW A; 1WWR A; 4P9D A; 1VQ2 A; 1UX1 A; 3E1U A; 3ZPG A; 4HRQ A; 4ZFR A; 4OWP B; 4ZD5 A; 2O3K A; 4ZFT A; 4MS7 A; 1R5X A; 1UX0 A; 4OWP A; 2ZNV A; 1RB7 A; 2Z3I A; 4D10 F; 3OJ6 A; 1ZAB A; 2Z3J A; 1UAQ A; 4O8Y B; 2OBC A; 5M59 B; 2HVW A; 2ZNR A; 2HVV A; 3ZEF B; 4MSJ A; 4P9E A; 1CTU A; 4O8Y A; 1YSB A; 2D30 A; 4LC5 A; 2O96 A; 3IJF X; 1TIY A; 1YSD A; 2B3Z A; 5CW6 A; 2D5N A; 4QFT A; 4ZD4 A; 2RPZ A; 1CTT A; 4KIT C; 4LCP A; 4P9C A; 4MSM A; 3DMO A; 3G8Q A; 3SBG A; 2O7P A; 4LD4 A; 4WIG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
