The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
91
|
sequence length |
297
|
structure length |
297
|
Chain Sequence |
NAMRNRIEQALQQMPASFAPYLRELVLAKDFDATFSAEQYQQLLTLSGLEDADLRVALLPIAAAYSYAPISEFYVGAIVRGISGRLYLGANMEFTGAQLGQTVHAEQCAISHAWMKGEKGVADITINFSPCGHCRQFMNELTTASSLKIQLPKRAAKTLQEYLPESFGPADLGIDSGLMSPVNHGKTSDDDEELIQQALRAMNISHSPYTQNFSGVALKMRSGAIYLGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESATGKISHLADTQATLEVINPDIPLSYLSL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
Cytidine deaminase
|
| publication title |
2.2 Angstrom Crystal Structure of Cytidine deaminase from Vibrio cholerae in Complex with Zinc and Uridine.
rcsb |
| source organism |
Vibrio cholerae
|
| total genus |
91
|
| structure length |
297
|
| sequence length |
297
|
| chains with identical sequence |
B, C, D, E, F, G, H
|
| ec nomenclature |
ec
3.5.4.5: Cytidine deaminase. |
| pdb deposition date | 2012-03-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region |
| A | PF08211 | dCMP_cyt_deam_2 | Cytidine and deoxycytidylate deaminase zinc-binding region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 4OCN B; 2P87 A; 2Z3G A; 4LCP A; 2RPZ A; 3EX8 A; 4WIG A; 3E1U A; 1JTK A; 2HVV A; 4LD4 A; 4PQT A; 4O8Y A; 4LCN A; 1OX7 A; 1WKQ A; 3SBG A; 4F3W A; 2O96 A; 4OCN A; 1R5X A; 4LC5 A; 4OCL B; 2QLC A; 2Z3I A; 2PW9 A; 5DCA J; 4MSJ A; 2FR5 A; 1Z3A A; 1UWZ A; 1WWR A; 1TIY A; 3B8F A; 4P9C A; 2P8R A; 4I43 B; 2G84 A; 2KCQ A; 4P9D A; 3RZU A; 2O7P A; 3RZV A; 1UX0 A; 4OCL A; 4ZFR A; 1RB7 A; 5CW6 A; 4LD2 A; 2Z3H A; 1MQ0 A; 2KKS A; 4ZD5 A; 2G6V A; 4G3M A; 4KIT C; 4OWP B; 2A8N A; 1OI0 A; 2D30 A; 4WIF A; 2ZNR A; 3OCQ A; 2HVW A; 1WN6 A; 4MSD A; 3ZEF B; 1CTU A; 1P6O A; 2W4L A; 4EG2 A; 1VQ2 A; 4HRW A; 4O8X A; 2ZNV A; 4P9E A; 4ZD4 A; 2D5N A; 4MSM A; 1ALN A; 5GAO A; 5C2O A; 3IJF X; 3G8Q A; 3ZPC A; 5M52 C; 2B3J A; 2OBC A; 4OWP A; 4O8X B; 4LCO A; 1WN5 A; 3OJ6 A; 1UX1 A; 2FR6 A; 5M59 B; 3DMO A; 2O3K A; 4MS7 A; 1AF2 A; 3R2N A; 4JXE A; 4E0Q A; 4ILG C; 3ZPG A; 2NX8 A; 4MSQ A; 4BGD C; 4OCM B; 1UAQ A; 2Z3J A; 3MPZ A; 2HXV A; 4HRQ A; 1ZAB A; 1YSD A; 3DH1 A; 4K1R A; 1CTT A; 1YSB A; 4F7O A; 1R5T A; 4QFT A; 2B3Z A; 2NYT A; 2O95 A; 4NQL A; 4D10 F; 4O8Y B; 4OCM A; 2OG4 A; 4ZFT A; #chains in the Genus database with same CATH topology 4OCN B; 2P87 A; 3BH1 A; 1M9N A; 2Z3G A; 2B1I A; 4LCP A; 2IU0 A; 2RPZ A; 1P4R A; 3EX8 A; 4WIG A; 1G8M A; 3E1U A; 1PKX A; 1JTK A; 2HVV A; 4LD4 A; 4PQT A; 4O8Y A; 4LCN A; 1OX7 A; 3VX8 A; 1WKQ A; 3SBG A; 4F3W A; 2O96 A; 4OCN A; 4GGM X; 1R5X A; 4LC5 A; 4OCL B; 2QLC A; 2Z3I A; 2PW9 A; 5DCA J; 4MSJ A; 2FR5 A; 1Z3A A; 1UWZ A; 1WWR A; 1TIY A; 3B8F A; 2IU3 A; 4P9C A; 2P8R A; 4I43 B; 1VK9 A; 2G84 A; 2KCQ A; 4P9D A; 3RZU A; 4J6E A; 2O7P A; 3RZV A; 1UX0 A; 4OCL A; 4ZFR A; 1RB7 A; 5CW6 A; 1OZ0 A; 4LD2 A; 2Z3H A; 1MQ0 A; 2KKS A; 4ZD5 A; 2G6V A; 4G3M A; 4KIT C; 4OWP B; 2A8N A; 1OI0 A; 2D30 A; 4WIF A; 2ZNR A; 3OCQ A; 2HVW A; 1WN6 A; 4MSD A; 1PL0 A; 3ZEF B; 1CTU A; 1P6O A; 2W4L A; 4EG2 A; 1VQ2 A; 4HRW A; 4O8X A; 2ZNV A; 4P9E A; 4ZD4 A; 2D5N A; 4MSM A; 1ALN A; 5GAO A; 5C2O A; 3IJF X; 3G8Q A; 3ZPC A; 5M52 C; 2B3J A; 2OBC A; 4OWP A; 4O8X B; 4LCO A; 1WN5 A; 3OJ6 A; 1UX1 A; 2FR6 A; 5M59 B; 3DMO A; 4EHI A; 2O3K A; 4MS7 A; 1AF2 A; 3R2N A; 4JXE A; 4E0Q A; 4ILG C; 3ZPG A; 2NX8 A; 4MSQ A; 4BGD C; 4OCM B; 1UAQ A; 2Z3J A; 3MPZ A; 4A1O A; 2HXV A; 4HRQ A; 1ZAB A; 2B1G A; 1YSD A; 3DH1 A; 4K1R A; 1CTT A; 1YSB A; 4F7O A; 1R5T A; 1ZCZ A; 4QFT A; 2B3Z A; 3ZZM A; 1THZ A; 2NYT A; 2O95 A; 4NQL A; 4D10 F; 4O8Y B; 4OCM A; 2OG4 A; 4ZFT A; #chains in the Genus database with same CATH homology 4OCN B; 2P87 A; 2Z3G A; 4LCP A; 2RPZ A; 3EX8 A; 4WIG A; 3E1U A; 1JTK A; 2HVV A; 4LD4 A; 4PQT A; 4O8Y A; 4LCN A; 1OX7 A; 1WKQ A; 3SBG A; 4F3W A; 2O96 A; 4OCN A; 1R5X A; 4LC5 A; 4OCL B; 2QLC A; 2Z3I A; 2PW9 A; 5DCA J; 4MSJ A; 2FR5 A; 1Z3A A; 1UWZ A; 1WWR A; 1TIY A; 3B8F A; 4P9C A; 2P8R A; 4I43 B; 2G84 A; 2KCQ A; 4P9D A; 3RZU A; 2O7P A; 3RZV A; 1UX0 A; 4OCL A; 4ZFR A; 1RB7 A; 5CW6 A; 4LD2 A; 2Z3H A; 1MQ0 A; 2KKS A; 4ZD5 A; 2G6V A; 4G3M A; 4KIT C; 4OWP B; 2A8N A; 1OI0 A; 2D30 A; 4WIF A; 2ZNR A; 3OCQ A; 2HVW A; 1WN6 A; 4MSD A; 3ZEF B; 1CTU A; 1P6O A; 2W4L A; 4EG2 A; 1VQ2 A; 4HRW A; 4O8X A; 2ZNV A; 4P9E A; 4ZD4 A; 2D5N A; 4MSM A; 1ALN A; 5GAO A; 5C2O A; 3IJF X; 3G8Q A; 3ZPC A; 5M52 C; 2B3J A; 2OBC A; 4OWP A; 4O8X B; 4LCO A; 1WN5 A; 3OJ6 A; 1UX1 A; 2FR6 A; 5M59 B; 3DMO A; 2O3K A; 4MS7 A; 1AF2 A; 3R2N A; 4JXE A; 4E0Q A; 4ILG C; 3ZPG A; 2NX8 A; 4MSQ A; 4BGD C; 4OCM B; 1UAQ A; 2Z3J A; 3MPZ A; 2HXV A; 4HRQ A; 1ZAB A; 1YSD A; 3DH1 A; 4K1R A; 1CTT A; 1YSB A; 4F7O A; 1R5T A; 4QFT A; 2B3Z A; 2NYT A; 2O95 A; 4NQL A; 4D10 F; 4O8Y B; 4OCM A; 2OG4 A; 4ZFT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
