The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
94
|
sequence length |
294
|
structure length |
294
|
Chain Sequence |
MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Cytidine deaminase complexed to 3-deazacytidine: a "valence buffer" in zinc enzyme catalysis.
pubmed doi rcsb |
| molecule keywords |
CYTIDINE DEAMINASE
|
| molecule tags |
Hydrolase
|
| source organism |
Escherichia coli
|
| total genus |
94
|
| structure length |
294
|
| sequence length |
294
|
| ec nomenclature |
ec
3.5.4.5: Cytidine deaminase. |
| pdb deposition date | 1997-06-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region |
| A | PF08211 | dCMP_cyt_deam_2 | Cytidine and deoxycytidylate deaminase zinc-binding region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 4OCM A; 1P6O A; 1YSB A; 3ZPC A; 4OWP A; 3RZU A; 4MS7 A; 2FR5 A; 5M59 B; 3MPZ A; 4OCN A; 4HRQ A; 3SBG A; 1MQ0 A; 2O95 A; 1WN6 A; 5DCA J; 2FR6 A; 4O8Y A; 3E1U A; 4P9C A; 2KKS A; 1R5T A; 4OCL B; 1UX1 A; 4P9D A; 1UAQ A; 2RPZ A; 4LCN A; 4HRW A; 4PQT A; 5M52 C; 1WN5 A; 4LD4 A; 4QFT A; 2NYT A; 2Z3H A; 5CW6 A; 4LD2 A; 1YSD A; 4BGD C; 4ZD4 A; 4JXE A; 4O8X A; 3DMO A; 4MSQ A; 2QLC A; 4MSD A; 3EX8 A; 1RB7 A; 1WKQ A; 4OCM B; 2PW9 A; 4WIG A; 1WWR A; 3G8Q A; 4WIF A; 1AF2 A; 3ZEF B; 2KCQ A; 2P8R A; 4ZD5 A; 2A8N A; 1TIY A; 4OCN B; 1ZAB A; 2O3K A; 4ZFT A; 5GAO A; 3B8F A; 2HXV A; 1R5X A; 4MSJ A; 4O8Y B; 4P9E A; 4NQL A; 2ZNV A; 2Z3G A; 2OBC A; 2OG4 A; 4ILG C; 4F7O A; 2W4L A; 1UX0 A; 3IJF X; 1Z3A A; 2B3J A; 4KIT C; 4EG2 A; 2D5N A; 2O96 A; 4OWP B; 3R2N A; 4MSM A; 1UWZ A; 1OI0 A; 4D10 F; 4G3M A; 4LC5 A; 2Z3J A; 2ZNR A; 3RZV A; 3ZPG A; 4ZFR A; 3DH1 A; 4LCP A; 1CTT A; 1VQ2 A; 2B3Z A; 2HVV A; 2NX8 A; 4OCL A; 2HVW A; 5C2O A; 2G84 A; 4F3W A; 3OCQ A; 2G6V A; 2O7P A; 4K1R A; 3OJ6 A; 4E0Q A; 2P87 A; 4LCO A; 2Z3I A; 1JTK A; 2D30 A; 1ALN A; 4I43 B; 1OX7 A; 1CTU A; 4O8X B; #chains in the Genus database with same CATH topology 4OCM A; 1P6O A; 4GGM X; 1YSB A; 3ZPC A; 4OWP A; 3RZU A; 1P4R A; 4MS7 A; 2FR5 A; 5M59 B; 3MPZ A; 4OCN A; 4HRQ A; 3SBG A; 1MQ0 A; 2O95 A; 1WN6 A; 5DCA J; 4A1O A; 2FR6 A; 4O8Y A; 3E1U A; 4P9C A; 2KKS A; 1R5T A; 4OCL B; 1UX1 A; 4P9D A; 1UAQ A; 2RPZ A; 4LCN A; 4HRW A; 1G8M A; 4PQT A; 5M52 C; 1WN5 A; 1VK9 A; 4LD4 A; 3BH1 A; 4QFT A; 2NYT A; 2Z3H A; 5CW6 A; 4LD2 A; 1YSD A; 4BGD C; 4ZD4 A; 4JXE A; 4O8X A; 3DMO A; 4MSQ A; 2QLC A; 4MSD A; 3EX8 A; 1RB7 A; 1WKQ A; 4OCM B; 2PW9 A; 4WIG A; 1WWR A; 3G8Q A; 4WIF A; 2B1G A; 1AF2 A; 3ZEF B; 2KCQ A; 2P8R A; 4ZD5 A; 2A8N A; 1TIY A; 2IU0 A; 4OCN B; 1ZAB A; 2O3K A; 4ZFT A; 5GAO A; 3B8F A; 2HXV A; 1R5X A; 4MSJ A; 4O8Y B; 4P9E A; 4NQL A; 1PL0 A; 4EHI A; 2ZNV A; 2Z3G A; 2OBC A; 2OG4 A; 2IU3 A; 4ILG C; 4F7O A; 2W4L A; 1UX0 A; 3IJF X; 1Z3A A; 2B3J A; 4KIT C; 4EG2 A; 3ZZM A; 2D5N A; 2O96 A; 2B1I A; 4OWP B; 3R2N A; 4MSM A; 1OI0 A; 1UWZ A; 4D10 F; 3VX8 A; 4G3M A; 4LC5 A; 2Z3J A; 2ZNR A; 3RZV A; 1ZCZ A; 3ZPG A; 4ZFR A; 3DH1 A; 4LCP A; 1CTT A; 1VQ2 A; 2B3Z A; 2HVV A; 2NX8 A; 4OCL A; 2HVW A; 5C2O A; 2G84 A; 4F3W A; 1OZ0 A; 4J6E A; 3OCQ A; 2G6V A; 2O7P A; 4K1R A; 3OJ6 A; 4E0Q A; 2P87 A; 4LCO A; 2Z3I A; 1M9N A; 1JTK A; 2D30 A; 1ALN A; 4I43 B; 1PKX A; 1OX7 A; 1CTU A; 1THZ A; 4O8X B; #chains in the Genus database with same CATH homology 4OCM A; 1P6O A; 1YSB A; 3ZPC A; 4OWP A; 3RZU A; 4MS7 A; 2FR5 A; 5M59 B; 3MPZ A; 4OCN A; 4HRQ A; 3SBG A; 1MQ0 A; 2O95 A; 1WN6 A; 5DCA J; 2FR6 A; 4O8Y A; 3E1U A; 4P9C A; 2KKS A; 1R5T A; 4OCL B; 1UX1 A; 4P9D A; 1UAQ A; 2RPZ A; 4LCN A; 4HRW A; 4PQT A; 5M52 C; 1WN5 A; 4LD4 A; 4QFT A; 2NYT A; 2Z3H A; 5CW6 A; 4LD2 A; 1YSD A; 4BGD C; 4ZD4 A; 4JXE A; 4O8X A; 3DMO A; 4MSQ A; 2QLC A; 4MSD A; 3EX8 A; 1RB7 A; 1WKQ A; 4OCM B; 2PW9 A; 4WIG A; 1WWR A; 3G8Q A; 4WIF A; 1AF2 A; 3ZEF B; 2KCQ A; 2P8R A; 4ZD5 A; 2A8N A; 1TIY A; 4OCN B; 1ZAB A; 2O3K A; 4ZFT A; 5GAO A; 3B8F A; 2HXV A; 1R5X A; 4MSJ A; 4O8Y B; 4P9E A; 4NQL A; 2ZNV A; 2Z3G A; 2OBC A; 2OG4 A; 4ILG C; 4F7O A; 2W4L A; 1UX0 A; 3IJF X; 1Z3A A; 2B3J A; 4KIT C; 4EG2 A; 2D5N A; 2O96 A; 4OWP B; 3R2N A; 4MSM A; 1UWZ A; 1OI0 A; 4D10 F; 4G3M A; 4LC5 A; 2Z3J A; 2ZNR A; 3RZV A; 3ZPG A; 4ZFR A; 3DH1 A; 4LCP A; 1CTT A; 1VQ2 A; 2B3Z A; 2HVV A; 2NX8 A; 4OCL A; 2HVW A; 5C2O A; 2G84 A; 4F3W A; 3OCQ A; 2G6V A; 2O7P A; 4K1R A; 3OJ6 A; 4E0Q A; 2P87 A; 4LCO A; 2Z3I A; 1JTK A; 2D30 A; 1ALN A; 4I43 B; 1OX7 A; 1CTU A; 4O8X B;
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