1CTUA

Transition-state selectivity for a single oh group during catalysis by cytidine deaminase
Total Genus 93

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
294
structure length
294
Chain Sequence
MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSATGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECKDGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDATSATLKALGCHSIDRVLLA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI1 (22-25)3H1 (3-5)AH8 (239-250)AH1 (6-11)AH2 (14-21)AH3 (35-44)S1 (32-33)S3 (84-88)AH4 (49-62)S2 (74-79)TIV3 (66-69)TIV4 (67-70)TIV5 (124-127)TI3 (79-82)TII1 (92-95)3H2 (97-99)AH5 (103-114)AH7 (190-201)TI4 (139-142)3H4 (157-160)AH6 (130-137)S9 (228-230)TII3 (175-178)TI7 (230-233)3H3 (142-144)S5 (146-148)S6 (154-156)TIV6 (161-164)3H5 (167-170)S8 (222-226)TI5 (205-208)TIV7 (204-207)S7 (211-217)TI6 (217-220)S10 (233-237)3H6 (254-256)S11 (257-264)TI9 (265-268)TIV1 (21-24)TI2 (26-29)TIV2 (23-26)TII2 (149-152)AH9 (272-283)S4 (119-124)S12 (288-292)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Escherichia coli
publication title Transition-state selectivity for a single hydroxyl group during catalysis by cytidine deaminase.
pubmed doi rcsb
molecule keywords CYTIDINE DEAMINASE
total genus 93
structure length 294
sequence length 294
ec nomenclature ec 3.5.4.5: Cytidine deaminase.
pdb deposition date 1995-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
A PF08211 dCMP_cyt_deam_2 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1ctuA01
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1ctuA02
4O8XB 4O8YB 4LD4A 2Z3IA 3IJFX 4WIGA 4BGDC 1WN5A 2W4LA 4LCNA 2O95A 1WN6A 2HVVA 3DMOA 4KITC 1UWZA 1UX1A 1JTKA 4OWPA 4JXEA 4F3WA 4HRWA 3R2NA 3SBGA 4P9DA 3RZUA 1RB7A 4OWPB 1OI0A 1YSBA 1CTUA 4MSMA 4NQLA 4ILGC 5CW6A 1OX7A 2G84A 4MSQA 3E1UA 2NX8A 4PQTA 4WIFA 4QFTA 4ZD4A 4G3MA 4HRQA 1UX0A 2HVWA 4ZD5A 2P87A 4ZFTA 4OCMA 4I43B 3ZPGA 2O3KA 2ZNVA 1R5XA 4OCMB 4D10F 3DH1A 2HXVA 5M52C 3ZPCA 4LC5A 2O7PA 2FR6A 5DCAJ 2FR5A 2Z3GA 4LD2A 2Z3HA 4K1RA 4EG2A 1YSDA 1ALNA 4MSJA 1CTTA 3MPZA 4P9EA 5M59B 2KCQA 4ZFRA 5GAOA 3G8QA 1TIYA 1ZABA 2ZNRA 1WKQA 2D30A 1AF2A 2Z3JA 2NYTA 2A8NA 4OCLA 2D5NA 2B3ZA 3ZEFB 2P8RA 4OCNA 4LCOA 2OBCA 2KKSA 5C2OA 2RPZA 4OCLB 3OJ6A 2OG4A 4MS7A 4OCNB 4LCPA 1Z3AA 2O96A 1VQ2A 4F7OA 3B8FA 4MSDA 4P9CA 1UAQA 1MQ0A 1R5TA 1WWRA 3EX8A 3OCQA 3RZVA 2QLCA 4E0QA 2PW9A 4O8XA 2B3JA 4O8YA 1P6OA 2G6VA
chains in the Genus database with same CATH superfamily
4O8XB 4O8YB 4LD4A 2Z3IA 3IJFX 4WIGA 4BGDC 1WN5A 2W4LA 4EHIA 4LCNA 4J6EA 2O95A 1WN6A 2HVVA 3DMOA 4KITC 1UWZA 1UX1A 1JTKA 4OWPA 4JXEA 4F3WA 4HRWA 3R2NA 3SBGA 4P9DA 3RZUA 1RB7A 4OWPB 1OI0A 1YSBA 1CTUA 4MSMA 4NQLA 4ILGC 5CW6A 1OX7A 2G84A 4MSQA 1PL0A 3E1UA 2NX8A 1PKXA 4PQTA 4WIFA 4QFTA 4ZD4A 4G3MA 4HRQA 1UX0A 2HVWA 4ZD5A 2P87A 2IU3A 4ZFTA 4OCMA 4I43B 3ZPGA 2O3KA 2ZNVA 1R5XA 4OCMB 1G8MA 4D10F 3DH1A 1ZCZA 2HXVA 5M52C 3ZZMA 3ZPCA 4LC5A 2O7PA 2FR6A 1M9NA 5DCAJ 2FR5A 2Z3GA 4LD2A 2Z3HA 4K1RA 4EG2A 1YSDA 1ALNA 4MSJA 1CTTA 3MPZA 4P9EA 5M59B 2KCQA 3VX8A 1VK9A 4ZFRA 5GAOA 3G8QA 1TIYA 1ZABA 2ZNRA 1WKQA 2D30A 1AF2A 2Z3JA 1P4RA 2NYTA 2A8NA 4OCLA 2D5NA 2B3ZA 3ZEFB 2P8RA 2B1IA 4OCNA 4LCOA 2OBCA 2KKSA 4GGMX 5C2OA 2RPZA 1OZ0A 4OCLB 3OJ6A 2OG4A 4MS7A 4OCNB 2IU0A 3BH1A 4LCPA 1Z3AA 2O96A 4A1OA 1VQ2A 4F7OA 3B8FA 4MSDA 4P9CA 1UAQA 1MQ0A 1R5TA 1WWRA 3EX8A 2B1GA 3OCQA 3RZVA 2QLCA 4E0QA 1THZA 2PW9A 4O8XA 2B3JA 4O8YA 1P6OA 2G6VA
chains in the Genus database with same CATH topology
4O8XB 4O8YB 4LD4A 2Z3IA 3IJFX 4WIGA 4BGDC 1WN5A 2W4LA 4LCNA 2O95A 1WN6A 2HVVA 3DMOA 4KITC 1UWZA 1UX1A 1JTKA 4OWPA 4JXEA 4F3WA 4HRWA 3R2NA 3SBGA 4P9DA 3RZUA 1RB7A 4OWPB 1OI0A 1YSBA 1CTUA 4MSMA 4NQLA 4ILGC 5CW6A 1OX7A 2G84A 4MSQA 3E1UA 2NX8A 4PQTA 4WIFA 4QFTA 4ZD4A 4G3MA 4HRQA 1UX0A 2HVWA 4ZD5A 2P87A 4ZFTA 4OCMA 4I43B 3ZPGA 2O3KA 2ZNVA 1R5XA 4OCMB 4D10F 3DH1A 2HXVA 5M52C 3ZPCA 4LC5A 2O7PA 2FR6A 5DCAJ 2FR5A 2Z3GA 4LD2A 2Z3HA 4K1RA 4EG2A 1YSDA 1ALNA 4MSJA 1CTTA 3MPZA 4P9EA 5M59B 2KCQA 4ZFRA 5GAOA 3G8QA 1TIYA 1ZABA 2ZNRA 1WKQA 2D30A 1AF2A 2Z3JA 2NYTA 2A8NA 4OCLA 2D5NA 2B3ZA 3ZEFB 2P8RA 4OCNA 4LCOA 2OBCA 2KKSA 5C2OA 2RPZA 4OCLB 3OJ6A 2OG4A 4MS7A 4OCNB 4LCPA 1Z3AA 2O96A 1VQ2A 4F7OA 3B8FA 4MSDA 4P9CA 1UAQA 1MQ0A 1R5TA 1WWRA 3EX8A 3OCQA 3RZVA 2QLCA 4E0QA 2PW9A 4O8XA 2B3JA 4O8YA 1P6OA 2G6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4O8X B;  4O8Y B;  4LD4 A;  2Z3I A;  3IJF X;  4WIG A;  4BGD C;  1WN5 A;  2W4L A;  4LCN A;  2O95 A;  1WN6 A;  2HVV A;  3DMO A;  4KIT C;  1UWZ A;  1UX1 A;  1JTK A;  4OWP A;  4JXE A;  4F3W A;  4HRW A;  3R2N A;  3SBG A;  4P9D A;  3RZU A;  1RB7 A;  4OWP B;  1OI0 A;  1YSB A;  1CTU A;  4MSM A;  4NQL A;  4ILG C;  5CW6 A;  1OX7 A;  2G84 A;  4MSQ A;  3E1U A;  2NX8 A;  4PQT A;  4WIF A;  4QFT A;  4ZD4 A;  4G3M A;  4HRQ A;  1UX0 A;  2HVW A;  4ZD5 A;  2P87 A;  4ZFT A;  4OCM A;  4I43 B;  3ZPG A;  2O3K A;  2ZNV A;  1R5X A;  4OCM B;  4D10 F;  3DH1 A;  2HXV A;  5M52 C;  3ZPC A;  4LC5 A;  2O7P A;  2FR6 A;  5DCA J;  2FR5 A;  2Z3G A;  4LD2 A;  2Z3H A;  4K1R A;  4EG2 A;  1YSD A;  1ALN A;  4MSJ A;  1CTT A;  3MPZ A;  4P9E A;  5M59 B;  2KCQ A;  4ZFR A;  5GAO A;  3G8Q A;  1TIY A;  1ZAB A;  2ZNR A;  1WKQ A;  2D30 A;  1AF2 A;  2Z3J A;  2NYT A;  2A8N A;  4OCL A;  2D5N A;  2B3Z A;  3ZEF B;  2P8R A;  4OCN A;  4LCO A;  2OBC A;  2KKS A;  5C2O A;  2RPZ A;  4OCL B;  3OJ6 A;  2OG4 A;  4MS7 A;  4OCN B;  4LCP A;  1Z3A A;  2O96 A;  1VQ2 A;  4F7O A;  3B8F A;  4MSD A;  4P9C A;  1UAQ A;  1MQ0 A;  1R5T A;  1WWR A;  3EX8 A;  3OCQ A;  3RZV A;  2QLC A;  4E0Q A;  2PW9 A;  4O8X A;  2B3J A;  4O8Y A;  1P6O A;  2G6V A; 
#chains in the Genus database with same CATH topology
 4O8X B;  4O8Y B;  4LD4 A;  2Z3I A;  3IJF X;  4WIG A;  4BGD C;  1WN5 A;  2W4L A;  4EHI A;  4LCN A;  4J6E A;  2O95 A;  1WN6 A;  2HVV A;  3DMO A;  4KIT C;  1UWZ A;  1UX1 A;  1JTK A;  4OWP A;  4JXE A;  4F3W A;  4HRW A;  3R2N A;  3SBG A;  4P9D A;  3RZU A;  1RB7 A;  4OWP B;  1OI0 A;  1YSB A;  1CTU A;  4MSM A;  4NQL A;  4ILG C;  5CW6 A;  1OX7 A;  2G84 A;  4MSQ A;  1PL0 A;  3E1U A;  2NX8 A;  1PKX A;  4PQT A;  4WIF A;  4QFT A;  4ZD4 A;  4G3M A;  4HRQ A;  1UX0 A;  2HVW A;  4ZD5 A;  2P87 A;  2IU3 A;  4ZFT A;  4OCM A;  4I43 B;  3ZPG A;  2O3K A;  2ZNV A;  1R5X A;  4OCM B;  1G8M A;  4D10 F;  3DH1 A;  1ZCZ A;  2HXV A;  5M52 C;  3ZZM A;  3ZPC A;  4LC5 A;  2O7P A;  2FR6 A;  1M9N A;  5DCA J;  2FR5 A;  2Z3G A;  4LD2 A;  2Z3H A;  4K1R A;  4EG2 A;  1YSD A;  1ALN A;  4MSJ A;  1CTT A;  3MPZ A;  4P9E A;  5M59 B;  2KCQ A;  3VX8 A;  1VK9 A;  4ZFR A;  5GAO A;  3G8Q A;  1TIY A;  1ZAB A;  2ZNR A;  1WKQ A;  2D30 A;  1AF2 A;  2Z3J A;  1P4R A;  2NYT A;  2A8N A;  4OCL A;  2D5N A;  2B3Z A;  3ZEF B;  2P8R A;  2B1I A;  4OCN A;  4LCO A;  2OBC A;  2KKS A;  4GGM X;  5C2O A;  2RPZ A;  1OZ0 A;  4OCL B;  3OJ6 A;  2OG4 A;  4MS7 A;  4OCN B;  2IU0 A;  3BH1 A;  4LCP A;  1Z3A A;  2O96 A;  4A1O A;  1VQ2 A;  4F7O A;  3B8F A;  4MSD A;  4P9C A;  1UAQ A;  1MQ0 A;  1R5T A;  1WWR A;  3EX8 A;  2B1G A;  3OCQ A;  3RZV A;  2QLC A;  4E0Q A;  1THZ A;  2PW9 A;  4O8X A;  2B3J A;  4O8Y A;  1P6O A;  2G6V A; 
#chains in the Genus database with same CATH homology
 4O8X B;  4O8Y B;  4LD4 A;  2Z3I A;  3IJF X;  4WIG A;  4BGD C;  1WN5 A;  2W4L A;  4LCN A;  2O95 A;  1WN6 A;  2HVV A;  3DMO A;  4KIT C;  1UWZ A;  1UX1 A;  1JTK A;  4OWP A;  4JXE A;  4F3W A;  4HRW A;  3R2N A;  3SBG A;  4P9D A;  3RZU A;  1RB7 A;  4OWP B;  1OI0 A;  1YSB A;  1CTU A;  4MSM A;  4NQL A;  4ILG C;  5CW6 A;  1OX7 A;  2G84 A;  4MSQ A;  3E1U A;  2NX8 A;  4PQT A;  4WIF A;  4QFT A;  4ZD4 A;  4G3M A;  4HRQ A;  1UX0 A;  2HVW A;  4ZD5 A;  2P87 A;  4ZFT A;  4OCM A;  4I43 B;  3ZPG A;  2O3K A;  2ZNV A;  1R5X A;  4OCM B;  4D10 F;  3DH1 A;  2HXV A;  5M52 C;  3ZPC A;  4LC5 A;  2O7P A;  2FR6 A;  5DCA J;  2FR5 A;  2Z3G A;  4LD2 A;  2Z3H A;  4K1R A;  4EG2 A;  1YSD A;  1ALN A;  4MSJ A;  1CTT A;  3MPZ A;  4P9E A;  5M59 B;  2KCQ A;  4ZFR A;  5GAO A;  3G8Q A;  1TIY A;  1ZAB A;  2ZNR A;  1WKQ A;  2D30 A;  1AF2 A;  2Z3J A;  2NYT A;  2A8N A;  4OCL A;  2D5N A;  2B3Z A;  3ZEF B;  2P8R A;  4OCN A;  4LCO A;  2OBC A;  2KKS A;  5C2O A;  2RPZ A;  4OCL B;  3OJ6 A;  2OG4 A;  4MS7 A;  4OCN B;  4LCP A;  1Z3A A;  2O96 A;  1VQ2 A;  4F7O A;  3B8F A;  4MSD A;  4P9C A;  1UAQ A;  1MQ0 A;  1R5T A;  1WWR A;  3EX8 A;  3OCQ A;  3RZV A;  2QLC A;  4E0Q A;  2PW9 A;  4O8X A;  2B3J A;  4O8Y A;  1P6O A;  2G6V A; 
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