The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
41
|
sequence length |
141
|
structure length |
141
|
Chain Sequence |
KVGGIEDRQLEALKRAALKACELSYSPYSHFRVGCSILTNNDVIFTGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFVVKDFPIVMLNSTGSRSKVMTMGELLPMAFGPSHLN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure of a yeast RNA-editing deaminase provides insight into the fold and function of activation-induced deaminase and APOBEC-1.
pubmed doi rcsb |
| molecule keywords |
Cytidine deaminase
|
| molecule tags |
Hydrolase
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
41
|
| structure length |
141
|
| sequence length |
141
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature |
ec
3.5.4.5: Cytidine deaminase. |
| pdb deposition date | 2003-10-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 2P87 A; 2NYT A; 4F7O A; 4O8X A; 2PW9 A; 1TIY A; 2Z3I A; 4OCM A; 1YSB A; 3IJF X; 2W4L A; 4EG2 A; 1UX0 A; 4O8Y B; 4G3M A; 2KCQ A; 2RPZ A; 3R2N A; 2QLC A; 2O7P A; 3SBG A; 5C2O A; 4D10 F; 3RZV A; 4OCN B; 2OG4 A; 3E1U A; 2OBC A; 3RZU A; 3ZPG A; 4F3W A; 2G6V A; 1ALN A; 4WIG A; 4P9C A; 5M59 B; 1R5X A; 4K1R A; 1VQ2 A; 1JTK A; 1CTT A; 1UWZ A; 2A8N A; 4MS7 A; 4O8X B; 2HVV A; 1OX7 A; 4OWP A; 2ZNV A; 4OCM B; 5DCA J; 2B3J A; 4LC5 A; 3DMO A; 1RB7 A; 5GAO A; 4OCL A; 4MSM A; 2HVW A; 3MPZ A; 1MQ0 A; 4HRW A; 2FR6 A; 4ZD4 A; 1WWR A; 4JXE A; 4WIF A; 2O3K A; 1YSD A; 4LCN A; 2FR5 A; 4E0Q A; 1OI0 A; 3OCQ A; 1UX1 A; 4NQL A; 4ILG C; 3OJ6 A; 3ZEF B; 1UAQ A; 2HXV A; 1R5T A; 2B3Z A; 1WN5 A; 5CW6 A; 4OWP B; 2NX8 A; 1P6O A; 3ZPC A; 4LCO A; 2Z3G A; 1WKQ A; 4KIT C; 4LD2 A; 4OCL B; 5M52 C; 3B8F A; 2D5N A; 1Z3A A; 2KKS A; 4ZFT A; 4P9E A; 4O8Y A; 2G84 A; 2O96 A; 2ZNR A; 4LD4 A; 4QFT A; 4MSQ A; 4PQT A; 3EX8 A; 1ZAB A; 4OCN A; 4ZD5 A; 3DH1 A; 1CTU A; 2D30 A; 4BGD C; 4MSD A; 4P9D A; 4HRQ A; 2P8R A; 4LCP A; 1WN6 A; 2O95 A; 2Z3H A; 4MSJ A; 4ZFR A; 1AF2 A; 2Z3J A; 4I43 B; 3G8Q A; #chains in the Genus database with same CATH topology 2P87 A; 2NYT A; 4F7O A; 4O8X A; 2PW9 A; 1TIY A; 2Z3I A; 4OCM A; 1YSB A; 3IJF X; 2W4L A; 4EG2 A; 1UX0 A; 4O8Y B; 4G3M A; 2KCQ A; 2RPZ A; 3R2N A; 2QLC A; 2O7P A; 3SBG A; 5C2O A; 4D10 F; 3RZV A; 4OCN B; 2OG4 A; 4GGM X; 3E1U A; 3VX8 A; 2OBC A; 3RZU A; 3BH1 A; 3ZPG A; 1M9N A; 4F3W A; 2G6V A; 1ALN A; 4WIG A; 4P9C A; 5M59 B; 1R5X A; 4K1R A; 1ZCZ A; 1VQ2 A; 1JTK A; 1CTT A; 1UWZ A; 2A8N A; 4MS7 A; 4O8X B; 2HVV A; 1OX7 A; 4OWP A; 2ZNV A; 4OCM B; 5DCA J; 4A1O A; 2B3J A; 4LC5 A; 2IU3 A; 3DMO A; 2IU0 A; 1RB7 A; 1PKX A; 5GAO A; 4OCL A; 4MSM A; 2HVW A; 3MPZ A; 2B1G A; 1MQ0 A; 4HRW A; 2FR6 A; 4ZD4 A; 1WWR A; 4JXE A; 4WIF A; 1PL0 A; 2O3K A; 1YSD A; 4LCN A; 2FR5 A; 1P4R A; 4E0Q A; 1OI0 A; 3OCQ A; 1UX1 A; 4NQL A; 4ILG C; 3OJ6 A; 3ZEF B; 1UAQ A; 2HXV A; 1R5T A; 2B3Z A; 1WN5 A; 5CW6 A; 4OWP B; 1THZ A; 2NX8 A; 1P6O A; 3ZPC A; 4LCO A; 2Z3G A; 1WKQ A; 4KIT C; 4LD2 A; 4OCL B; 5M52 C; 3B8F A; 2D5N A; 1Z3A A; 2KKS A; 4ZFT A; 4P9E A; 4O8Y A; 2G84 A; 2O96 A; 2ZNR A; 4LD4 A; 4QFT A; 2B1I A; 4MSQ A; 3EX8 A; 1ZAB A; 4PQT A; 4OCN A; 1VK9 A; 4EHI A; 4ZD5 A; 3DH1 A; 1CTU A; 2D30 A; 4BGD C; 3ZZM A; 4MSD A; 4P9D A; 4HRQ A; 2P8R A; 4J6E A; 4LCP A; 1WN6 A; 2O95 A; 2Z3H A; 4MSJ A; 4ZFR A; 1OZ0 A; 1AF2 A; 2Z3J A; 4I43 B; 3G8Q A; 1G8M A; #chains in the Genus database with same CATH homology 2P87 A; 2NYT A; 4F7O A; 4O8X A; 2PW9 A; 1TIY A; 2Z3I A; 4OCM A; 1YSB A; 3IJF X; 2W4L A; 4EG2 A; 1UX0 A; 4O8Y B; 4G3M A; 2KCQ A; 2RPZ A; 3R2N A; 2QLC A; 2O7P A; 3SBG A; 5C2O A; 4D10 F; 3RZV A; 4OCN B; 2OG4 A; 3E1U A; 2OBC A; 3RZU A; 3ZPG A; 4F3W A; 2G6V A; 1ALN A; 4WIG A; 4P9C A; 5M59 B; 1R5X A; 4K1R A; 1VQ2 A; 1JTK A; 1CTT A; 1UWZ A; 2A8N A; 4MS7 A; 4O8X B; 2HVV A; 1OX7 A; 4OWP A; 2ZNV A; 4OCM B; 5DCA J; 2B3J A; 4LC5 A; 3DMO A; 1RB7 A; 5GAO A; 4OCL A; 4MSM A; 2HVW A; 3MPZ A; 1MQ0 A; 4HRW A; 2FR6 A; 4ZD4 A; 1WWR A; 4JXE A; 4WIF A; 2O3K A; 1YSD A; 4LCN A; 2FR5 A; 4E0Q A; 1OI0 A; 3OCQ A; 1UX1 A; 4NQL A; 4ILG C; 3OJ6 A; 3ZEF B; 1UAQ A; 2HXV A; 1R5T A; 2B3Z A; 1WN5 A; 5CW6 A; 4OWP B; 2NX8 A; 1P6O A; 3ZPC A; 4LCO A; 2Z3G A; 1WKQ A; 4KIT C; 4LD2 A; 4OCL B; 5M52 C; 3B8F A; 2D5N A; 1Z3A A; 2KKS A; 4ZFT A; 4P9E A; 4O8Y A; 2G84 A; 2O96 A; 2ZNR A; 4LD4 A; 4QFT A; 4MSQ A; 4PQT A; 3EX8 A; 1ZAB A; 4OCN A; 4ZD5 A; 3DH1 A; 1CTU A; 2D30 A; 4BGD C; 4MSD A; 4P9D A; 4HRQ A; 2P8R A; 4LCP A; 1WN6 A; 2O95 A; 2Z3H A; 4MSJ A; 4ZFR A; 1AF2 A; 2Z3J A; 4I43 B; 3G8Q A;
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