1VQ2A

Crystal structure of t4-bacteriophage deoxycytidylate deaminase, mutant r115e
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
193
structure length
173
Chain Sequence
MKASTVLQIAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRNAGIEVFNVPKKNLNKLNWENINEFCGE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (3-15)AH6 (161-167)S5 (124-130)S7 (170-173)TIV1 (19-22)S2 (33-39)TIV2 (29-32)TII1 (43-46)S3 (59-60)TIV3 (61-84)3H1 (88-90)EMPTYAH4 (105-116)TII2 (120-123)TII3 (157-160)S1 (25-30)AH2 (49-56)S4 (85-86)AH3 (91-100)AH5 (133-141)TI1 (153-156)S6 (146-152)Updating...
connected with : NaN
publication title Three-Dimensional Structure of the R115E Mutant of T4-Bacteriophage 2'-Deoxycytidylate Deaminase
pubmed doi rcsb
molecule tags Hydrolase
source organism Enterobacteria phage t4
molecule keywords DEOXYCYTIDYLATE DEAMINASE
total genus 52
structure length 173
sequence length 193
ec nomenclature ec 3.5.4.12: dCMP deaminase.
pdb deposition date 2004-12-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00383 dCMP_cyt_deam_1 Cytidine and deoxycytidylate deaminase zinc-binding region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.140.10 Alpha Beta 3-Layer(aba) Sandwich Cytidine Deaminase; domain 2 Cytidine Deaminase, domain 2 1vq2A00
3MPZA 3RZVA 1Z3AA 2PW9A 2Z3IA 1ALNA 1AF2A 2NX8A 4OWPB 4EG2A 4PQTA 1UX0A 2B3ZA 2O3KA 3DH1A 2QLCA 4O8YA 4OWPA 4ZFRA 2O95A 1TIYA 1OX7A 2P87A 2P8RA 4ZD4A 1WN6A 2A8NA 2HVWA 4MSQA 2D30A 1UX1A 3G8QA 2Z3HA 4JXEA 2B3JA 3E1UA 1WN5A 4LD2A 4WIGA 4ZD5A 3ZPCA 4MS7A 4BGDC 4D10F 5DCAJ 4E0QA 4HRWA 4P9EA 4LCOA 4LC5A 1JTKA 4G3MA 1R5TA 4F7OA 4OCLB 4P9CA 3DMOA 5C2OA 4OCMB 3OCQA 4OCLA 3IJFX 4OCNB 4O8XB 4ZFTA 2O7PA 3R2NA 1WKQA 4OCMA 4WIFA 2HXVA 4NQLA 3OJ6A 1CTUA 4LCPA 5GAOA 4LD4A 2O96A 4QFTA 2FR5A 1ZABA 5M59B 1CTTA 3ZEFB 2Z3GA 4ILGC 3B8FA 1VQ2A 1OI0A 1UWZA 1RB7A 4MSMA 2ZNVA 4F3WA 1MQ0A 1UAQA 4O8YB 4KITC 1WWRA 2NYTA 2Z3JA 3SBGA 2G6VA 2ZNRA 4P9DA 1R5XA 2HVVA 2FR6A 2OBCA 4OCNA 1YSDA 4O8XA 5M52C 4MSJA 2G84A 3ZPGA 4K1RA 2KCQA 2OG4A 2W4LA 3EX8A 4I43B 2RPZA 1P6OA 3RZUA 2KKSA 5CW6A 1YSBA 4MSDA 2D5NA 4HRQA 4LCNA
chains in the Genus database with same CATH superfamily
3MPZA 3RZVA 1Z3AA 2PW9A 2Z3IA 1ALNA 1AF2A 2NX8A 4OWPB 3ZZMA 4EG2A 4PQTA 1UX0A 2B3ZA 2O3KA 3DH1A 2QLCA 4O8YA 4OWPA 4ZFRA 2O95A 1TIYA 1OX7A 2P87A 1THZA 2P8RA 4ZD4A 1WN6A 2A8NA 2HVWA 4MSQA 2D30A 1UX1A 1PL0A 3G8QA 2Z3HA 4JXEA 2IU0A 2B3JA 3E1UA 1WN5A 4LD2A 4WIGA 4ZD5A 3ZPCA 4MS7A 4BGDC 4D10F 5DCAJ 2B1GA 4E0QA 4HRWA 4P9EA 4LCOA 1M9NA 4LC5A 1JTKA 4G3MA 1G8MA 1R5TA 4F7OA 4OCLB 4P9CA 3DMOA 5C2OA 4OCMB 2B1IA 3OCQA 3BH1A 4OCLA 3IJFX 4EHIA 4OCNB 4O8XB 4ZFTA 4A1OA 2O7PA 3R2NA 1WKQA 4OCMA 4WIFA 1P4RA 2HXVA 4NQLA 3OJ6A 1CTUA 4LCPA 5GAOA 4LD4A 2O96A 4QFTA 2FR5A 1ZABA 5M59B 1CTTA 3ZEFB 2Z3GA 4ILGC 3B8FA 4GGMX 1VQ2A 1OI0A 3VX8A 1UWZA 1RB7A 4MSMA 2ZNVA 4F3WA 1MQ0A 1UAQA 4O8YB 4KITC 1WWRA 1OZ0A 2NYTA 2Z3JA 1ZCZA 3SBGA 2G6VA 2ZNRA 4P9DA 1VK9A 1R5XA 2HVVA 2FR6A 2OBCA 4OCNA 1YSDA 4O8XA 5M52C 1PKXA 2IU3A 2G84A 4MSJA 3ZPGA 4K1RA 2KCQA 2OG4A 2W4LA 4J6EA 3EX8A 4I43B 2RPZA 1P6OA 3RZUA 2KKSA 5CW6A 1YSBA 4MSDA 2D5NA 4HRQA 4LCNA
chains in the Genus database with same CATH topology
3MPZA 3RZVA 1Z3AA 2PW9A 2Z3IA 1ALNA 1AF2A 2NX8A 4OWPB 4EG2A 4PQTA 1UX0A 2B3ZA 2O3KA 3DH1A 2QLCA 4O8YA 4OWPA 4ZFRA 2O95A 1TIYA 1OX7A 2P87A 2P8RA 4ZD4A 1WN6A 2A8NA 2HVWA 4MSQA 2D30A 1UX1A 3G8QA 2Z3HA 4JXEA 2B3JA 3E1UA 1WN5A 4LD2A 4WIGA 4ZD5A 3ZPCA 4MS7A 4BGDC 4D10F 5DCAJ 4E0QA 4HRWA 4P9EA 4LCOA 4LC5A 1JTKA 4G3MA 1R5TA 4F7OA 4OCLB 4P9CA 3DMOA 5C2OA 4OCMB 3OCQA 4OCLA 3IJFX 4OCNB 4O8XB 4ZFTA 2O7PA 3R2NA 1WKQA 4OCMA 4WIFA 2HXVA 4NQLA 3OJ6A 1CTUA 4LCPA 5GAOA 4LD4A 2O96A 4QFTA 2FR5A 1ZABA 5M59B 1CTTA 3ZEFB 2Z3GA 4ILGC 3B8FA 1VQ2A 1OI0A 1UWZA 1RB7A 4MSMA 2ZNVA 4F3WA 1MQ0A 1UAQA 4O8YB 4KITC 1WWRA 2NYTA 2Z3JA 3SBGA 2G6VA 2ZNRA 4P9DA 1R5XA 2HVVA 2FR6A 2OBCA 4OCNA 1YSDA 4O8XA 5M52C 4MSJA 2G84A 3ZPGA 4K1RA 2KCQA 2OG4A 2W4LA 3EX8A 4I43B 2RPZA 1P6OA 3RZUA 2KKSA 5CW6A 1YSBA 4MSDA 2D5NA 4HRQA 4LCNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MPZ A;  3RZV A;  1Z3A A;  2PW9 A;  2Z3I A;  1ALN A;  1AF2 A;  2NX8 A;  4OWP B;  4EG2 A;  4PQT A;  1UX0 A;  2B3Z A;  2O3K A;  3DH1 A;  2QLC A;  4O8Y A;  4OWP A;  4ZFR A;  2O95 A;  1TIY A;  1OX7 A;  2P87 A;  2P8R A;  4ZD4 A;  1WN6 A;  2A8N A;  2HVW A;  4MSQ A;  2D30 A;  1UX1 A;  3G8Q A;  2Z3H A;  4JXE A;  2B3J A;  3E1U A;  1WN5 A;  4LD2 A;  4WIG A;  4ZD5 A;  3ZPC A;  4MS7 A;  4BGD C;  4D10 F;  5DCA J;  4E0Q A;  4HRW A;  4P9E A;  4LCO A;  4LC5 A;  1JTK A;  4G3M A;  1R5T A;  4F7O A;  4OCL B;  4P9C A;  3DMO A;  5C2O A;  4OCM B;  3OCQ A;  4OCL A;  3IJF X;  4OCN B;  4O8X B;  4ZFT A;  2O7P A;  3R2N A;  1WKQ A;  4OCM A;  4WIF A;  2HXV A;  4NQL A;  3OJ6 A;  1CTU A;  4LCP A;  5GAO A;  4LD4 A;  2O96 A;  4QFT A;  2FR5 A;  1ZAB A;  5M59 B;  1CTT A;  3ZEF B;  2Z3G A;  4ILG C;  3B8F A;  1VQ2 A;  1OI0 A;  1UWZ A;  1RB7 A;  4MSM A;  2ZNV A;  4F3W A;  1MQ0 A;  1UAQ A;  4O8Y B;  4KIT C;  1WWR A;  2NYT A;  2Z3J A;  3SBG A;  2G6V A;  2ZNR A;  4P9D A;  1R5X A;  2HVV A;  2FR6 A;  2OBC A;  4OCN A;  1YSD A;  4O8X A;  5M52 C;  4MSJ A;  2G84 A;  3ZPG A;  4K1R A;  2KCQ A;  2OG4 A;  2W4L A;  3EX8 A;  4I43 B;  2RPZ A;  1P6O A;  3RZU A;  2KKS A;  5CW6 A;  1YSB A;  4MSD A;  2D5N A;  4HRQ A;  4LCN A; 
#chains in the Genus database with same CATH topology
 3MPZ A;  3RZV A;  1Z3A A;  2PW9 A;  2Z3I A;  1ALN A;  1AF2 A;  2NX8 A;  4OWP B;  3ZZM A;  4EG2 A;  4PQT A;  1UX0 A;  2B3Z A;  2O3K A;  3DH1 A;  2QLC A;  4O8Y A;  4OWP A;  4ZFR A;  2O95 A;  1TIY A;  1OX7 A;  2P87 A;  1THZ A;  2P8R A;  4ZD4 A;  1WN6 A;  2A8N A;  2HVW A;  4MSQ A;  2D30 A;  1UX1 A;  1PL0 A;  3G8Q A;  2Z3H A;  4JXE A;  2IU0 A;  2B3J A;  3E1U A;  1WN5 A;  4LD2 A;  4WIG A;  4ZD5 A;  3ZPC A;  4MS7 A;  4BGD C;  4D10 F;  5DCA J;  2B1G A;  4E0Q A;  4HRW A;  4P9E A;  4LCO A;  1M9N A;  4LC5 A;  1JTK A;  4G3M A;  1G8M A;  1R5T A;  4F7O A;  4OCL B;  4P9C A;  3DMO A;  5C2O A;  4OCM B;  2B1I A;  3OCQ A;  3BH1 A;  4OCL A;  3IJF X;  4EHI A;  4OCN B;  4O8X B;  4ZFT A;  4A1O A;  2O7P A;  3R2N A;  1WKQ A;  4OCM A;  4WIF A;  1P4R A;  2HXV A;  4NQL A;  3OJ6 A;  1CTU A;  4LCP A;  5GAO A;  4LD4 A;  2O96 A;  4QFT A;  2FR5 A;  1ZAB A;  5M59 B;  1CTT A;  3ZEF B;  2Z3G A;  4ILG C;  3B8F A;  4GGM X;  1VQ2 A;  1OI0 A;  3VX8 A;  1UWZ A;  1RB7 A;  4MSM A;  2ZNV A;  4F3W A;  1MQ0 A;  1UAQ A;  4O8Y B;  4KIT C;  1WWR A;  1OZ0 A;  2NYT A;  2Z3J A;  1ZCZ A;  3SBG A;  2G6V A;  2ZNR A;  4P9D A;  1VK9 A;  1R5X A;  2HVV A;  2FR6 A;  2OBC A;  4OCN A;  1YSD A;  4O8X A;  5M52 C;  1PKX A;  2IU3 A;  2G84 A;  4MSJ A;  3ZPG A;  4K1R A;  2KCQ A;  2OG4 A;  2W4L A;  4J6E A;  3EX8 A;  4I43 B;  2RPZ A;  1P6O A;  3RZU A;  2KKS A;  5CW6 A;  1YSB A;  4MSD A;  2D5N A;  4HRQ A;  4LCN A; 
#chains in the Genus database with same CATH homology
 3MPZ A;  3RZV A;  1Z3A A;  2PW9 A;  2Z3I A;  1ALN A;  1AF2 A;  2NX8 A;  4OWP B;  4EG2 A;  4PQT A;  1UX0 A;  2B3Z A;  2O3K A;  3DH1 A;  2QLC A;  4O8Y A;  4OWP A;  4ZFR A;  2O95 A;  1TIY A;  1OX7 A;  2P87 A;  2P8R A;  4ZD4 A;  1WN6 A;  2A8N A;  2HVW A;  4MSQ A;  2D30 A;  1UX1 A;  3G8Q A;  2Z3H A;  4JXE A;  2B3J A;  3E1U A;  1WN5 A;  4LD2 A;  4WIG A;  4ZD5 A;  3ZPC A;  4MS7 A;  4BGD C;  4D10 F;  5DCA J;  4E0Q A;  4HRW A;  4P9E A;  4LCO A;  4LC5 A;  1JTK A;  4G3M A;  1R5T A;  4F7O A;  4OCL B;  4P9C A;  3DMO A;  5C2O A;  4OCM B;  3OCQ A;  4OCL A;  3IJF X;  4OCN B;  4O8X B;  4ZFT A;  2O7P A;  3R2N A;  1WKQ A;  4OCM A;  4WIF A;  2HXV A;  4NQL A;  3OJ6 A;  1CTU A;  4LCP A;  5GAO A;  4LD4 A;  2O96 A;  4QFT A;  2FR5 A;  1ZAB A;  5M59 B;  1CTT A;  3ZEF B;  2Z3G A;  4ILG C;  3B8F A;  1VQ2 A;  1OI0 A;  1UWZ A;  1RB7 A;  4MSM A;  2ZNV A;  4F3W A;  1MQ0 A;  1UAQ A;  4O8Y B;  4KIT C;  1WWR A;  2NYT A;  2Z3J A;  3SBG A;  2G6V A;  2ZNR A;  4P9D A;  1R5X A;  2HVV A;  2FR6 A;  2OBC A;  4OCN A;  1YSD A;  4O8X A;  5M52 C;  4MSJ A;  2G84 A;  3ZPG A;  4K1R A;  2KCQ A;  2OG4 A;  2W4L A;  3EX8 A;  4I43 B;  2RPZ A;  1P6O A;  3RZU A;  2KKS A;  5CW6 A;  1YSB A;  4MSD A;  2D5N A;  4HRQ A;  4LCN A; 
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