The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
193
|
structure length |
173
|
Chain Sequence |
MKASTVLQIAYLVSQESKCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKRFVLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPDCAKAIAQSGIKKLVYCETYDKNKPGWDDILRNAGIEVFNVPKKNLNKLNWENINEFCGE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Three-Dimensional Structure of the R115E Mutant of T4-Bacteriophage 2'-Deoxycytidylate Deaminase
pubmed doi rcsb |
| molecule keywords |
DEOXYCYTIDYLATE DEAMINASE
|
| molecule tags |
Hydrolase
|
| source organism |
Enterobacteria phage t4
|
| total genus |
52
|
| structure length |
173
|
| sequence length |
193
|
| ec nomenclature |
ec
3.5.4.12: dCMP deaminase. |
| pdb deposition date | 2004-12-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00383 | dCMP_cyt_deam_1 | Cytidine and deoxycytidylate deaminase zinc-binding region |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 5GAO A; 5M59 B; 4ZFR A; 3ZEF B; 2QLC A; 4OCN A; 4WIG A; 2NX8 A; 2ZNV A; 3DMO A; 3EX8 A; 4P9D A; 1WN6 A; 3OCQ A; 2G84 A; 3ZPC A; 2NYT A; 2FR5 A; 1UX1 A; 1UAQ A; 1JTK A; 2W4L A; 3R2N A; 4ILG C; 4PQT A; 4MSM A; 3DH1 A; 4WIF A; 2O3K A; 4P9E A; 4LC5 A; 4I43 B; 4P9C A; 4LCO A; 3E1U A; 2OBC A; 2Z3I A; 4MSJ A; 4O8X B; 2Z3H A; 1YSD A; 2D30 A; 1CTU A; 5CW6 A; 4OCM A; 4O8Y B; 1MQ0 A; 5C2O A; 2B3Z A; 4LCP A; 4ZD4 A; 2KKS A; 2G6V A; 4OCM B; 3MPZ A; 2B3J A; 4F7O A; 4LD2 A; 2O95 A; 4O8X A; 3B8F A; 3G8Q A; 4HRW A; 4MSD A; 2HXV A; 1TIY A; 4O8Y A; 2ZNR A; 1OX7 A; 4F3W A; 1UX0 A; 1CTT A; 4KIT C; 2KCQ A; 4ZD5 A; 1P6O A; 1R5X A; 3IJF X; 4NQL A; 1Z3A A; 4OCL A; 4K1R A; 2P8R A; 1RB7 A; 4MS7 A; 2FR6 A; 4E0Q A; 4LD4 A; 2O7P A; 2HVV A; 4OCL B; 2OG4 A; 2Z3G A; 1YSB A; 3RZU A; 4HRQ A; 2RPZ A; 4LCN A; 4G3M A; 1OI0 A; 2O96 A; 4OWP A; 5M52 C; 2HVW A; 1WKQ A; 4OCN B; 1ZAB A; 4QFT A; 4OWP B; 2D5N A; 4EG2 A; 4BGD C; 2PW9 A; 1WN5 A; 2Z3J A; 4JXE A; 1R5T A; 2P87 A; 1ALN A; 5DCA J; 4D10 F; 3RZV A; 3ZPG A; 4MSQ A; 3OJ6 A; 1WWR A; 1UWZ A; 4ZFT A; 1VQ2 A; 1AF2 A; 2A8N A; 3SBG A; #chains in the Genus database with same CATH topology 5GAO A; 5M59 B; 4ZFR A; 3ZEF B; 2QLC A; 4OCN A; 4WIG A; 2NX8 A; 2ZNV A; 3DMO A; 3EX8 A; 4P9D A; 2IU0 A; 1VK9 A; 1WN6 A; 3OCQ A; 2G84 A; 3ZPC A; 4GGM X; 2NYT A; 2FR5 A; 1UX1 A; 1UAQ A; 1JTK A; 2W4L A; 3R2N A; 4ILG C; 4PQT A; 4MSM A; 3DH1 A; 4WIF A; 2O3K A; 4P9E A; 4LC5 A; 1ZCZ A; 4I43 B; 4P9C A; 4LCO A; 3E1U A; 1PL0 A; 2OBC A; 2Z3I A; 3BH1 A; 4MSJ A; 4O8X B; 2Z3H A; 1YSD A; 2D30 A; 1CTU A; 5CW6 A; 4OCM A; 4O8Y B; 2B1I A; 1MQ0 A; 5C2O A; 2B3Z A; 4LCP A; 4ZD4 A; 2KKS A; 2G6V A; 4OCM B; 3MPZ A; 2B3J A; 4F7O A; 4J6E A; 4LD2 A; 2O95 A; 1PKX A; 4O8X A; 3B8F A; 4EHI A; 3G8Q A; 4HRW A; 4MSD A; 2HXV A; 1TIY A; 4O8Y A; 2ZNR A; 1OX7 A; 4F3W A; 1UX0 A; 1CTT A; 4KIT C; 2KCQ A; 4ZD5 A; 1P6O A; 1R5X A; 3IJF X; 4NQL A; 1Z3A A; 4OCL A; 1G8M A; 4K1R A; 2B1G A; 2P8R A; 1RB7 A; 4MS7 A; 2FR6 A; 3ZZM A; 4E0Q A; 4LD4 A; 2O7P A; 2HVV A; 4OCL B; 2OG4 A; 2Z3G A; 1YSB A; 3RZU A; 4HRQ A; 2RPZ A; 4LCN A; 4G3M A; 1OI0 A; 2O96 A; 4OWP A; 5M52 C; 2HVW A; 1WKQ A; 4OCN B; 1ZAB A; 4QFT A; 4OWP B; 2D5N A; 1THZ A; 4EG2 A; 4BGD C; 2PW9 A; 1OZ0 A; 1WN5 A; 2IU3 A; 2Z3J A; 4JXE A; 1R5T A; 2P87 A; 1ALN A; 5DCA J; 4D10 F; 3RZV A; 3ZPG A; 1P4R A; 4MSQ A; 3OJ6 A; 1WWR A; 4A1O A; 1UWZ A; 1M9N A; 4ZFT A; 1VQ2 A; 1AF2 A; 2A8N A; 3VX8 A; 3SBG A; #chains in the Genus database with same CATH homology 5GAO A; 5M59 B; 4ZFR A; 3ZEF B; 2QLC A; 4OCN A; 4WIG A; 2NX8 A; 2ZNV A; 3DMO A; 3EX8 A; 4P9D A; 1WN6 A; 3OCQ A; 2G84 A; 3ZPC A; 2NYT A; 2FR5 A; 1UX1 A; 1UAQ A; 1JTK A; 2W4L A; 3R2N A; 4ILG C; 4PQT A; 4MSM A; 3DH1 A; 4WIF A; 2O3K A; 4P9E A; 4LC5 A; 4I43 B; 4P9C A; 4LCO A; 3E1U A; 2OBC A; 2Z3I A; 4MSJ A; 4O8X B; 2Z3H A; 1YSD A; 2D30 A; 1CTU A; 5CW6 A; 4OCM A; 4O8Y B; 1MQ0 A; 5C2O A; 2B3Z A; 4LCP A; 4ZD4 A; 2KKS A; 2G6V A; 4OCM B; 3MPZ A; 2B3J A; 4F7O A; 4LD2 A; 2O95 A; 4O8X A; 3B8F A; 3G8Q A; 4HRW A; 4MSD A; 2HXV A; 1TIY A; 4O8Y A; 2ZNR A; 1OX7 A; 4F3W A; 1UX0 A; 1CTT A; 4KIT C; 2KCQ A; 4ZD5 A; 1P6O A; 1R5X A; 3IJF X; 4NQL A; 1Z3A A; 4OCL A; 4K1R A; 2P8R A; 1RB7 A; 4MS7 A; 2FR6 A; 4E0Q A; 4LD4 A; 2O7P A; 2HVV A; 4OCL B; 2OG4 A; 2Z3G A; 1YSB A; 3RZU A; 4HRQ A; 2RPZ A; 4LCN A; 4G3M A; 1OI0 A; 2O96 A; 4OWP A; 5M52 C; 2HVW A; 1WKQ A; 4OCN B; 1ZAB A; 4QFT A; 4OWP B; 2D5N A; 4EG2 A; 4BGD C; 2PW9 A; 1WN5 A; 2Z3J A; 4JXE A; 1R5T A; 2P87 A; 1ALN A; 5DCA J; 4D10 F; 3RZV A; 3ZPG A; 4MSQ A; 3OJ6 A; 1WWR A; 1UWZ A; 4ZFT A; 1VQ2 A; 1AF2 A; 2A8N A; 3SBG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
