2Z3G | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	123
structure length	123
Chain Sequence	PLSQEESTLIERATATINSIPISEDYSVASAALSSDGRIFTGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENRGILSPCGRCRQVLLDLHPGIKAIVKDSDGQPTAVGIRELLPS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Aspergillus terreus
publication title	Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc pubmed doi rcsb
molecule keywords	Blasticidin-S deaminase
total genus	33
structure length	123
sequence length	123
chains with identical sequence	B, C, D
ec nomenclature	ec 3.5.4.23: Blasticidin-S deaminase.
pdb deposition date	2007-06-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00383	dCMP_cyt_deam_1	Cytidine and deoxycytidylate deaminase zinc-binding region

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.40.140.10	Alpha Beta	3-Layer(aba) Sandwich	Cytidine Deaminase; domain 2	Cytidine Deaminase, domain 2	2z3gA00

4MSMA 2O96A 4OCMA 2O95A 4ZFTA 1R5XA 1CTUA 3R2NA 4KITC 2P8RA 1MQ0A 1YSBA 5DCAJ 4LC5A 4LCPA 1UAQA 2ZNVA 2RPZA 4D10F 3DMOA 3B8FA 2ZNRA 1UWZA 3ZEFB 4HRWA 4I43B 3EX8A 5GAOA 2OBCA 2Z3IA 3G8QA 2NX8A 1ZABA 4HRQA 1OX7A 1CTTA 2P87A 4F7OA 1ALNA 2G6VA 1WN5A 2FR6A 2B3ZA 4LD2A 1R5TA 4K1RA 4MS7A 4P9EA 2O7PA 4P9CA 4OCNB 3OJ6A 2G84A 4ZD4A 4OCNA 4MSQA 4OWPB 2O3KA 1P6OA 1WN6A 2A8NA 1AF2A 1WWRA 2HVVA 4MSDA 2D5NA 4F3WA 4O8YB 4O8YA 2OG4A 2HVWA 3SBGA 4ZFRA 3IJFX 4O8XB 3RZVA 3ZPGA 2QLCA 4O8XA 1VQ2A 5M59B 4ILGC 5M52C 2NYTA 3MPZA 4WIGA 5C2OA 2HXVA 1UX1A 1OI0A 4MSJA 4OWPA 4G3MA 4OCMB 5CW6A 2PW9A 4WIFA 3ZPCA 4LD4A 1YSDA 3RZUA 1Z3AA 3DH1A 4PQTA 3OCQA 4OCLB 4JXEA 1TIYA 2B3JA 2KCQA 3E1UA 4OCLA 1JTKA 2FR5A 2Z3HA 2Z3GA 1WKQA 2D30A 1RB7A 4LCOA 2Z3JA 1UX0A 4EG2A 4BGDC 2KKSA 2W4LA 4E0QA 4QFTA 4NQLA 4LCNA 4P9DA 4ZD5A
chains in the Genus database with same CATH superfamily

1M9NA 4MSMA 2O96A 4OCMA 2O95A 4ZFTA 1R5XA 1CTUA 3R2NA 4KITC 2P8RA 1MQ0A 1YSBA 5DCAJ 4LC5A 4LCPA 4A1OA 1UAQA 2ZNVA 2RPZA 4D10F 3DMOA 3B8FA 2ZNRA 1UWZA 3ZEFB 4HRWA 4I43B 3EX8A 5GAOA 2OBCA 2Z3IA 3G8QA 2NX8A 1ZABA 1OX7A 4HRQA 1CTTA 2P87A 1P4RA 4EHIA 4F7OA 1ALNA 2G6VA 1WN5A 2FR6A 2B3ZA 4LD2A 1R5TA 2B1IA 4K1RA 4MS7A 4P9EA 2O7PA 4P9CA 4OCNB 3OJ6A 2G84A 4ZD4A 4OCNA 4MSQA 4OWPB 2O3KA 1P6OA 1WN6A 2A8NA 1AF2A 1WWRA 2HVVA 4MSDA 2D5NA 4F3WA 1OZ0A 4O8YB 3BH1A 4O8YA 2OG4A 2HVWA 1ZCZA 3SBGA 4ZFRA 1VK9A 1PL0A 3IJFX 4O8XB 3RZVA 3ZPGA 2QLCA 4O8XA 1VQ2A 5M59B 4ILGC 5M52C 2NYTA 4GGMX 2IU3A 3MPZA 4WIGA 2B1GA 5C2OA 2HXVA 1OI0A 1UX1A 4MSJA 4OWPA 4G3MA 2IU0A 4OCMB 4J6EA 5CW6A 2PW9A 4WIFA 3VX8A 3ZPCA 4LD4A 1YSDA 3RZUA 1Z3AA 3DH1A 4PQTA 3OCQA 4OCLB 1PKXA 1TIYA 4JXEA 2B3JA 1THZA 2KCQA 1G8MA 3E1UA 4OCLA 1JTKA 2FR5A 2Z3HA 2Z3GA 1WKQA 2D30A 1RB7A 4LCOA 2Z3JA 1UX0A 4EG2A 4BGDC 2KKSA 2W4LA 4E0QA 4QFTA 4NQLA 3ZZMA 4LCNA 4P9DA 4ZD5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4MSM A;  2O96 A;  4OCM A;  2O95 A;  4ZFT A;  1R5X A;  1CTU A;  3R2N A;  4KIT C;  2P8R A;  1MQ0 A;  1YSB A;  5DCA J;  4LC5 A;  4LCP A;  1UAQ A;  2ZNV A;  2RPZ A;  4D10 F;  3DMO A;  3B8F A;  2ZNR A;  1UWZ A;  3ZEF B;  4HRW A;  4I43 B;  3EX8 A;  5GAO A;  2OBC A;  2Z3I A;  3G8Q A;  2NX8 A;  1ZAB A;  4HRQ A;  1OX7 A;  1CTT A;  2P87 A;  4F7O A;  1ALN A;  2G6V A;  1WN5 A;  2FR6 A;  2B3Z A;  4LD2 A;  1R5T A;  4K1R A;  4MS7 A;  4P9E A;  2O7P A;  4P9C A;  4OCN B;  3OJ6 A;  2G84 A;  4ZD4 A;  4OCN A;  4MSQ A;  4OWP B;  2O3K A;  1P6O A;  1WN6 A;  2A8N A;  1AF2 A;  1WWR A;  2HVV A;  4MSD A;  2D5N A;  4F3W A;  4O8Y B;  4O8Y A;  2OG4 A;  2HVW A;  3SBG A;  4ZFR A;  3IJF X;  4O8X B;  3RZV A;  3ZPG A;  2QLC A;  4O8X A;  1VQ2 A;  5M59 B;  4ILG C;  5M52 C;  2NYT A;  3MPZ A;  4WIG A;  5C2O A;  2HXV A;  1UX1 A;  1OI0 A;  4MSJ A;  4OWP A;  4G3M A;  4OCM B;  5CW6 A;  2PW9 A;  4WIF A;  3ZPC A;  4LD4 A;  1YSD A;  3RZU A;  1Z3A A;  3DH1 A;  4PQT A;  3OCQ A;  4OCL B;  4JXE A;  1TIY A;  2B3J A;  2KCQ A;  3E1U A;  4OCL A;  1JTK A;  2FR5 A;  2Z3H A;  2Z3G A;  1WKQ A;  2D30 A;  1RB7 A;  4LCO A;  2Z3J A;  1UX0 A;  4EG2 A;  4BGD C;  2KKS A;  2W4L A;  4E0Q A;  4QFT A;  4NQL A;  4LCN A;  4P9D A;  4ZD5 A; 
#chains in the Genus database with same CATH topology
 1M9N A;  4MSM A;  2O96 A;  4OCM A;  2O95 A;  4ZFT A;  1R5X A;  1CTU A;  3R2N A;  4KIT C;  2P8R A;  1MQ0 A;  1YSB A;  5DCA J;  4LC5 A;  4LCP A;  4A1O A;  1UAQ A;  2ZNV A;  2RPZ A;  4D10 F;  3DMO A;  3B8F A;  2ZNR A;  1UWZ A;  3ZEF B;  4HRW A;  4I43 B;  3EX8 A;  5GAO A;  2OBC A;  2Z3I A;  3G8Q A;  2NX8 A;  1ZAB A;  1OX7 A;  4HRQ A;  1CTT A;  2P87 A;  1P4R A;  4EHI A;  4F7O A;  1ALN A;  2G6V A;  1WN5 A;  2FR6 A;  2B3Z A;  4LD2 A;  1R5T A;  2B1I A;  4K1R A;  4MS7 A;  4P9E A;  2O7P A;  4P9C A;  4OCN B;  3OJ6 A;  2G84 A;  4ZD4 A;  4OCN A;  4MSQ A;  4OWP B;  2O3K A;  1P6O A;  1WN6 A;  2A8N A;  1AF2 A;  1WWR A;  2HVV A;  4MSD A;  2D5N A;  4F3W A;  1OZ0 A;  4O8Y B;  3BH1 A;  4O8Y A;  2OG4 A;  2HVW A;  1ZCZ A;  3SBG A;  4ZFR A;  1VK9 A;  1PL0 A;  3IJF X;  4O8X B;  3RZV A;  3ZPG A;  2QLC A;  4O8X A;  1VQ2 A;  5M59 B;  4ILG C;  5M52 C;  2NYT A;  4GGM X;  2IU3 A;  3MPZ A;  4WIG A;  2B1G A;  5C2O A;  2HXV A;  1OI0 A;  1UX1 A;  4MSJ A;  4OWP A;  4G3M A;  2IU0 A;  4OCM B;  4J6E A;  5CW6 A;  2PW9 A;  4WIF A;  3VX8 A;  3ZPC A;  4LD4 A;  1YSD A;  3RZU A;  1Z3A A;  3DH1 A;  4PQT A;  3OCQ A;  4OCL B;  1PKX A;  1TIY A;  4JXE A;  2B3J A;  1THZ A;  2KCQ A;  1G8M A;  3E1U A;  4OCL A;  1JTK A;  2FR5 A;  2Z3H A;  2Z3G A;  1WKQ A;  2D30 A;  1RB7 A;  4LCO A;  2Z3J A;  1UX0 A;  4EG2 A;  4BGD C;  2KKS A;  2W4L A;  4E0Q A;  4QFT A;  4NQL A;  3ZZM A;  4LCN A;  4P9D A;  4ZD5 A; 
#chains in the Genus database with same CATH homology
 4MSM A;  2O96 A;  4OCM A;  2O95 A;  4ZFT A;  1R5X A;  1CTU A;  3R2N A;  4KIT C;  2P8R A;  1MQ0 A;  1YSB A;  5DCA J;  4LC5 A;  4LCP A;  1UAQ A;  2ZNV A;  2RPZ A;  4D10 F;  3DMO A;  3B8F A;  2ZNR A;  1UWZ A;  3ZEF B;  4HRW A;  4I43 B;  3EX8 A;  5GAO A;  2OBC A;  2Z3I A;  3G8Q A;  2NX8 A;  1ZAB A;  4HRQ A;  1OX7 A;  1CTT A;  2P87 A;  4F7O A;  1ALN A;  2G6V A;  1WN5 A;  2FR6 A;  2B3Z A;  4LD2 A;  1R5T A;  4K1R A;  4MS7 A;  4P9E A;  2O7P A;  4P9C A;  4OCN B;  3OJ6 A;  2G84 A;  4ZD4 A;  4OCN A;  4MSQ A;  4OWP B;  2O3K A;  1P6O A;  1WN6 A;  2A8N A;  1AF2 A;  1WWR A;  2HVV A;  4MSD A;  2D5N A;  4F3W A;  4O8Y B;  4O8Y A;  2OG4 A;  2HVW A;  3SBG A;  4ZFR A;  3IJF X;  4O8X B;  3RZV A;  3ZPG A;  2QLC A;  4O8X A;  1VQ2 A;  5M59 B;  4ILG C;  5M52 C;  2NYT A;  3MPZ A;  4WIG A;  5C2O A;  2HXV A;  1UX1 A;  1OI0 A;  4MSJ A;  4OWP A;  4G3M A;  4OCM B;  5CW6 A;  2PW9 A;  4WIF A;  3ZPC A;  4LD4 A;  1YSD A;  3RZU A;  1Z3A A;  3DH1 A;  4PQT A;  3OCQ A;  4OCL B;  4JXE A;  1TIY A;  2B3J A;  2KCQ A;  3E1U A;  4OCL A;  1JTK A;  2FR5 A;  2Z3H A;  2Z3G A;  1WKQ A;  2D30 A;  1RB7 A;  4LCO A;  2Z3J A;  1UX0 A;  4EG2 A;  4BGD C;  2KKS A;  2W4L A;  4E0Q A;  4QFT A;  4NQL A;  4LCN A;  4P9D A;  4ZD5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2Z3GA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations