The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
47
|
sequence length |
178
|
structure length |
178
|
Chain Sequence |
GPGHMEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEELFNVQDQHDLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSACKKKGFHPHTKEPRLFSICKHVLVKDIKIIVLDLR
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains
pubmed doi rcsb |
| molecule keywords |
AMSH-like protease
|
| molecule tags |
Hydrolase
|
| source organism |
Homo sapiens
|
| total genus |
47
|
| structure length |
178
|
| sequence length |
178
|
| ec nomenclature |
ec
3.1.2.15: Deleted entry. |
| pdb deposition date | 2008-05-01 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 2NYT A; 3R2N A; 4BGD C; 1R5X A; 4P9E A; 4HRQ A; 2HXV A; 4MSJ A; 1Z3A A; 1UX1 A; 1WKQ A; 2A8N A; 4E0Q A; 4F7O A; 2RPZ A; 5GAO A; 2Z3J A; 2O95 A; 2KCQ A; 2O96 A; 1MQ0 A; 2FR6 A; 2NX8 A; 2G6V A; 5M59 B; 3RZV A; 2QLC A; 4WIF A; 1WWR A; 3DMO A; 4F3W A; 4OCL A; 2B3Z A; 2ZNV A; 2D30 A; 3RZU A; 3MPZ A; 5DCA J; 2O3K A; 4LCN A; 4LC5 A; 1UX0 A; 4OCM B; 1ALN A; 4O8X A; 2HVV A; 1UWZ A; 1CTU A; 2O7P A; 4NQL A; 4WIG A; 4JXE A; 1AF2 A; 2OBC A; 2G84 A; 4OCN A; 3G8Q A; 1OI0 A; 1P6O A; 3IJF X; 1JTK A; 4ILG C; 3EX8 A; 2PW9 A; 4K1R A; 4ZD5 A; 2P8R A; 1WN6 A; 4LCP A; 3OJ6 A; 4OWP B; 1WN5 A; 1R5T A; 4HRW A; 2KKS A; 4PQT A; 3SBG A; 1RB7 A; 4KIT C; 1OX7 A; 4O8Y B; 1TIY A; 2OG4 A; 1YSD A; 2Z3I A; 4D10 F; 4P9D A; 4P9C A; 1CTT A; 2W4L A; 3ZPG A; 3ZPC A; 3B8F A; 4MS7 A; 4ZD4 A; 4MSD A; 4LD2 A; 1VQ2 A; 2Z3G A; 3OCQ A; 4ZFT A; 4O8X B; 5M52 C; 1YSB A; 2P87 A; 2FR5 A; 4ZFR A; 3DH1 A; 2HVW A; 3ZEF B; 4MSQ A; 2Z3H A; 4MSM A; 5CW6 A; 2B3J A; 4LCO A; 2D5N A; 2ZNR A; 1UAQ A; 4G3M A; 4I43 B; 4OCN B; 4OWP A; 4OCM A; 1ZAB A; 4QFT A; 4EG2 A; 4O8Y A; 5C2O A; 3E1U A; 4OCL B; 4LD4 A; #chains in the Genus database with same CATH topology 2NYT A; 3R2N A; 4BGD C; 1R5X A; 4P9E A; 4HRQ A; 2HXV A; 4MSJ A; 1Z3A A; 1UX1 A; 1WKQ A; 2A8N A; 4E0Q A; 4F7O A; 2RPZ A; 5GAO A; 2Z3J A; 4J6E A; 2O95 A; 2KCQ A; 2O96 A; 1MQ0 A; 2FR6 A; 2NX8 A; 2G6V A; 5M59 B; 3RZV A; 1THZ A; 2QLC A; 2IU3 A; 4WIF A; 1WWR A; 1M9N A; 3DMO A; 4F3W A; 4OCL A; 2B3Z A; 2ZNV A; 2D30 A; 3RZU A; 3MPZ A; 5DCA J; 2O3K A; 4LCN A; 4LC5 A; 1UX0 A; 4OCM B; 1ALN A; 4O8X A; 3VX8 A; 2HVV A; 1UWZ A; 1CTU A; 1PKX A; 2O7P A; 2B1G A; 4NQL A; 1ZCZ A; 4WIG A; 4JXE A; 1AF2 A; 2OBC A; 2G84 A; 4OCN A; 1OZ0 A; 3G8Q A; 1OI0 A; 1P6O A; 3IJF X; 1JTK A; 4ILG C; 3EX8 A; 2PW9 A; 4K1R A; 1P4R A; 2B1I A; 4ZD5 A; 2P8R A; 1WN6 A; 4LCP A; 3OJ6 A; 4OWP B; 1WN5 A; 1R5T A; 4HRW A; 2KKS A; 4PQT A; 3SBG A; 1RB7 A; 4KIT C; 1OX7 A; 3BH1 A; 4O8Y B; 1TIY A; 2OG4 A; 4A1O A; 1YSD A; 2Z3I A; 4D10 F; 4P9D A; 4P9C A; 1CTT A; 2W4L A; 3ZPG A; 3ZPC A; 3B8F A; 4MS7 A; 4ZD4 A; 4MSD A; 1G8M A; 4LD2 A; 1VQ2 A; 2Z3G A; 4GGM X; 3OCQ A; 4ZFT A; 4O8X B; 3ZZM A; 5M52 C; 1YSB A; 2P87 A; 2FR5 A; 4ZFR A; 3DH1 A; 2HVW A; 3ZEF B; 4MSQ A; 2IU0 A; 2Z3H A; 4MSM A; 5CW6 A; 2B3J A; 4LCO A; 2D5N A; 4EHI A; 2ZNR A; 1UAQ A; 4G3M A; 4I43 B; 4OCN B; 4OWP A; 4OCM A; 1ZAB A; 4QFT A; 4EG2 A; 4O8Y A; 5C2O A; 3E1U A; 1PL0 A; 4OCL B; 1VK9 A; 4LD4 A; #chains in the Genus database with same CATH homology 2NYT A; 3R2N A; 4BGD C; 1R5X A; 4P9E A; 4HRQ A; 2HXV A; 4MSJ A; 1Z3A A; 1UX1 A; 1WKQ A; 2A8N A; 4E0Q A; 4F7O A; 2RPZ A; 5GAO A; 2Z3J A; 2O95 A; 2KCQ A; 2O96 A; 1MQ0 A; 2FR6 A; 2NX8 A; 2G6V A; 5M59 B; 3RZV A; 2QLC A; 4WIF A; 1WWR A; 3DMO A; 4F3W A; 4OCL A; 2B3Z A; 2ZNV A; 2D30 A; 3RZU A; 3MPZ A; 5DCA J; 2O3K A; 4LCN A; 4LC5 A; 1UX0 A; 4OCM B; 1ALN A; 4O8X A; 2HVV A; 1UWZ A; 1CTU A; 2O7P A; 4NQL A; 4WIG A; 4JXE A; 1AF2 A; 2OBC A; 2G84 A; 4OCN A; 3G8Q A; 1OI0 A; 1P6O A; 3IJF X; 1JTK A; 4ILG C; 3EX8 A; 2PW9 A; 4K1R A; 4ZD5 A; 2P8R A; 1WN6 A; 4LCP A; 3OJ6 A; 4OWP B; 1WN5 A; 1R5T A; 4HRW A; 2KKS A; 4PQT A; 3SBG A; 1RB7 A; 4KIT C; 1OX7 A; 4O8Y B; 1TIY A; 2OG4 A; 1YSD A; 2Z3I A; 4D10 F; 4P9D A; 4P9C A; 1CTT A; 2W4L A; 3ZPG A; 3ZPC A; 3B8F A; 4MS7 A; 4ZD4 A; 4MSD A; 4LD2 A; 1VQ2 A; 2Z3G A; 3OCQ A; 4ZFT A; 4O8X B; 5M52 C; 1YSB A; 2P87 A; 2FR5 A; 4ZFR A; 3DH1 A; 2HVW A; 3ZEF B; 4MSQ A; 2Z3H A; 4MSM A; 5CW6 A; 2B3J A; 4LCO A; 2D5N A; 2ZNR A; 1UAQ A; 4G3M A; 4I43 B; 4OCN B; 4OWP A; 4OCM A; 1ZAB A; 4QFT A; 4EG2 A; 4O8Y A; 5C2O A; 3E1U A; 4OCL B; 4LD4 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
