The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
191
|
sequence length |
486
|
structure length |
486
|
Chain Sequence |
TIGFDREKYIEMQSQHIRERREALGGKLYLEMGGKLFDDMHASRVLPGFTPDNKIAMLDRIKDEVEILVCINAKDLERHKIRADLGISYEEDVLRLVDVFRDRGFLVEHVVLTQLENDNRLALAFIERLQRLGIKVSRHRVIPGYPTDMDRIVSDEGFGLNEYAETTRDLVVVTAPGPGSGKLATCLSQVYHEHKRGVAAGYAKFETFPIWNLPLEHPVNLAYEAATVDLNDANVIDHFHLAAYGEQTVNYNRDVEAFPLLKTLLERLMGESPYQSPTDMGVNMAGNCISDDAACRHASEQEIIRRYFKALVEEARTGKDSTQSDRAAVVMAKAGIKASQRVVVEPARQVEERTSLPGCAIELVDGSIITGATSDLLGCSSSMLLNALKHLAGIDDAIHLLSPESIEPIQTLKTVHLGSSNPRLHTDEVLIALSVSAATDSNAQKALDQLKNLRGCDVHTTTILGSVDEGIFRNLGVLVTSDPKFQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of protein DIP2346 from Corynebacterium diphtheriae.
rcsb |
| molecule keywords |
UPF0371 protein DIP2346
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Corynebacterium diphtheriae nctc 13129
|
| total genus |
191
|
| structure length |
486
|
| sequence length |
486
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2007-11-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF08903 | DUF1846 | Domain of unknown function (DUF1846) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | dip2346 fold | dip2346 domain like | ||
| Alpha Beta | Roll | dip2346 fold like | dip2346 domain like | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase; domain 2 |
#chains in the Genus database with same CATH superfamily 3BH1 A; #chains in the Genus database with same CATH topology 1OX7 A; 4NQL A; 3MPZ A; 1PL0 A; 2D30 A; 1ZAB A; 2OBC A; 2HVW A; 2Z3I A; 1MQ0 A; 2FR6 A; 4K1R A; 1WKQ A; 4EHI A; 1R5X A; 5C2O A; 4ZD5 A; 4HRW A; 2B3J A; 4JXE A; 4O8Y B; 4KIT C; 1WN6 A; 5DCA J; 2W4L A; 4J6E A; 4P9D A; 3RZV A; 4I43 B; 4LD2 A; 3SBG A; 1OI0 A; 4A1O A; 4GGM X; 4MS7 A; 2RPZ A; 4QFT A; 1TIY A; 1WN5 A; 4LD4 A; 4OCN A; 4MSD A; 2Z3G A; 2P8R A; 3ZZM A; 4P9C A; 2G6V A; 1PKX A; 4LCP A; 3R2N A; 4G3M A; 1YSB A; 1UX0 A; 4OWP A; 2QLC A; 2ZNV A; 4OCN B; 2KKS A; 4OCL A; 2IU3 A; 4MSQ A; 3RZU A; 2OG4 A; 5M59 B; 4OWP B; 1R5T A; 4MSJ A; 4OCL B; 1P6O A; 3E1U A; 4O8X A; 1M9N A; 3ZPC A; 1UWZ A; 4WIG A; 4ZD4 A; 4WIF A; 3DH1 A; 1VQ2 A; 1CTU A; 2O96 A; 2O95 A; 2B1I A; 1THZ A; 1UX1 A; 2B3Z A; 5CW6 A; 1ALN A; 3BH1 A; 2O3K A; 4D10 F; 4HRQ A; 4OCM A; 4E0Q A; 5M52 C; 2A8N A; 4EG2 A; 1Z3A A; 1AF2 A; 1WWR A; 1YSD A; 1OZ0 A; 2FR5 A; 3B8F A; 4OCM B; 4F3W A; 2B1G A; 2HVV A; 1UAQ A; 1RB7 A; 3G8Q A; 5GAO A; 4LC5 A; 2IU0 A; 2NX8 A; 2Z3H A; 4LCN A; 3ZPG A; 1JTK A; 4O8Y A; 1ZCZ A; 2KCQ A; 2D5N A; 4PQT A; 3ZEF B; 4O8X B; 2G84 A; 4ZFT A; 4MSM A; 2HXV A; 1CTT A; 2NYT A; 3DMO A; 2ZNR A; 2PW9 A; 2P87 A; 3EX8 A; 1G8M A; 1P4R A; 3OJ6 A; 4LCO A; 4F7O A; 1VK9 A; 3IJF X; 2Z3J A; 4ZFR A; 4ILG C; 2O7P A; 4BGD C; 4P9E A; 3VX8 A; 3OCQ A; #chains in the Genus database with same CATH homology 2IU0 A; 1PL0 A; 3ZZM A; 2B1I A; 1ZCZ A; 1PKX A; 1THZ A; 3BH1 A; 4EHI A; 2IU3 A; 1G8M A; 1P4R A; 1M9N A; 1OZ0 A; 4J6E A; 4A1O A; 4GGM X; 2B1G A; 3VX8 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
