The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
53
|
sequence length |
195
|
structure length |
181
|
Chain Sequence |
TKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGAGLLNKANIQALIHGLNRHYYSLNIDYHKTAKETKMLMNLH
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structure of the proteasomal deubiquitylation module Rpn8-Rpn11.
pubmed doi rcsb |
| molecule keywords |
26S proteasome regulatory subunit RPN8
|
| molecule tags |
Hydrolase, protein binding
|
| source organism |
Saccharomyces cerevisiae
|
| total genus |
53
|
| structure length |
181
|
| sequence length |
195
|
| chains with identical sequence |
E
|
| ec nomenclature |
ec
3.4.19.12: Ubiquitinyl hydrolase 1. |
| pdb deposition date | 2014-01-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF01398 | JAB | JAB1/Mov34/MPN/PAD-1 ubiquitin protease |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Cytidine Deaminase; domain 2 | Cytidine Deaminase, domain 2 |
#chains in the Genus database with same CATH superfamily 1CTU A; 2ZNR A; 3E1U A; 4OCN B; 4F7O A; 2D30 A; 2OG4 A; 1Z3A A; 4LCO A; 4OCL B; 4P9E A; 1WWR A; 2NX8 A; 2Z3I A; 4ILG C; 1UAQ A; 4LCP A; 3OJ6 A; 1OX7 A; 3OCQ A; 2A8N A; 3G8Q A; 4LC5 A; 1TIY A; 4G3M A; 4MS7 A; 2O96 A; 4OCN A; 4WIF A; 4ZFT A; 4ZD4 A; 2HVW A; 1WN5 A; 2NYT A; 2O3K A; 4O8Y B; 4OCL A; 4QFT A; 4I43 B; 2FR6 A; 5M52 C; 4OWP B; 1RB7 A; 2Z3G A; 4D10 F; 1WN6 A; 2HXV A; 2KKS A; 1R5X A; 3B8F A; 2HVV A; 2G6V A; 3SBG A; 3ZEF B; 4LCN A; 3EX8 A; 3R2N A; 3DH1 A; 1YSD A; 3DMO A; 4F3W A; 4O8Y A; 1YSB A; 5CW6 A; 2RPZ A; 4O8X B; 4ZD5 A; 1P6O A; 2Z3H A; 3RZV A; 4OWP A; 1JTK A; 4JXE A; 2FR5 A; 2G84 A; 4OCM B; 1UWZ A; 2W4L A; 2B3J A; 4K1R A; 2D5N A; 2OBC A; 2ZNV A; 4EG2 A; 4MSQ A; 4P9C A; 2O95 A; 1CTT A; 3RZU A; 4P9D A; 4MSD A; 1MQ0 A; 2P87 A; 4KIT C; 2PW9 A; 5C2O A; 4LD4 A; 1UX1 A; 4O8X A; 1WKQ A; 5DCA J; 1ZAB A; 4LD2 A; 2KCQ A; 4E0Q A; 2P8R A; 4WIG A; 4PQT A; 4MSM A; 4MSJ A; 4OCM A; 3MPZ A; 3IJF X; 1AF2 A; 2B3Z A; 4NQL A; 1VQ2 A; 4BGD C; 2QLC A; 3ZPG A; 1OI0 A; 1R5T A; 2Z3J A; 4HRW A; 5M59 B; 5GAO A; 3ZPC A; 4ZFR A; 1ALN A; 4HRQ A; 2O7P A; 1UX0 A; #chains in the Genus database with same CATH topology 1CTU A; 1OZ0 A; 2ZNR A; 4A1O A; 1PL0 A; 3E1U A; 4OCN B; 4F7O A; 2D30 A; 2OG4 A; 1Z3A A; 4J6E A; 4LCO A; 4OCL B; 4P9E A; 1WWR A; 1ZCZ A; 2NX8 A; 2Z3I A; 4ILG C; 1UAQ A; 4LCP A; 3OJ6 A; 1OX7 A; 3OCQ A; 2A8N A; 3G8Q A; 4LC5 A; 1TIY A; 4G3M A; 4MS7 A; 2O96 A; 4OCN A; 4WIF A; 4ZFT A; 4ZD4 A; 2HVW A; 1WN5 A; 2IU3 A; 1G8M A; 2NYT A; 2O3K A; 4O8Y B; 4OCL A; 1VK9 A; 3VX8 A; 4QFT A; 4I43 B; 2FR6 A; 5M52 C; 4OWP B; 1RB7 A; 2Z3G A; 3ZZM A; 4D10 F; 1WN6 A; 2HXV A; 2KKS A; 1R5X A; 3B8F A; 2HVV A; 2G6V A; 3SBG A; 3ZEF B; 4LCN A; 3EX8 A; 3R2N A; 3DH1 A; 1YSD A; 3DMO A; 4F3W A; 4O8Y A; 1YSB A; 5CW6 A; 3BH1 A; 2RPZ A; 4O8X B; 4ZD5 A; 1P6O A; 2IU0 A; 2Z3H A; 3RZV A; 2B1I A; 4OWP A; 1JTK A; 4JXE A; 2FR5 A; 2G84 A; 4OCM B; 1UWZ A; 2W4L A; 2B3J A; 4K1R A; 2D5N A; 2OBC A; 2ZNV A; 1THZ A; 4EG2 A; 4MSQ A; 4P9C A; 2O95 A; 1CTT A; 3RZU A; 4P9D A; 4MSD A; 1MQ0 A; 2P87 A; 1P4R A; 4KIT C; 2B1G A; 2PW9 A; 5C2O A; 4LD4 A; 1UX1 A; 4O8X A; 1WKQ A; 5DCA J; 1ZAB A; 4LD2 A; 2KCQ A; 4E0Q A; 2P8R A; 4WIG A; 4PQT A; 4EHI A; 1M9N A; 4MSM A; 4MSJ A; 4OCM A; 3MPZ A; 1PKX A; 3IJF X; 1AF2 A; 2B3Z A; 4NQL A; 1VQ2 A; 4BGD C; 2QLC A; 3ZPG A; 1OI0 A; 1R5T A; 2Z3J A; 4GGM X; 4HRW A; 5M59 B; 5GAO A; 3ZPC A; 4ZFR A; 1ALN A; 4HRQ A; 2O7P A; 1UX0 A; #chains in the Genus database with same CATH homology 1CTU A; 2ZNR A; 3E1U A; 4OCN B; 4F7O A; 2D30 A; 2OG4 A; 1Z3A A; 4LCO A; 4OCL B; 4P9E A; 1WWR A; 2NX8 A; 2Z3I A; 4ILG C; 1UAQ A; 4LCP A; 3OJ6 A; 1OX7 A; 3OCQ A; 2A8N A; 3G8Q A; 4LC5 A; 1TIY A; 4G3M A; 4MS7 A; 2O96 A; 4OCN A; 4WIF A; 4ZFT A; 4ZD4 A; 2HVW A; 1WN5 A; 2NYT A; 2O3K A; 4O8Y B; 4OCL A; 4QFT A; 4I43 B; 2FR6 A; 5M52 C; 4OWP B; 1RB7 A; 2Z3G A; 4D10 F; 1WN6 A; 2HXV A; 2KKS A; 1R5X A; 3B8F A; 2HVV A; 2G6V A; 3SBG A; 3ZEF B; 4LCN A; 3EX8 A; 3R2N A; 3DH1 A; 1YSD A; 3DMO A; 4F3W A; 4O8Y A; 1YSB A; 5CW6 A; 2RPZ A; 4O8X B; 4ZD5 A; 1P6O A; 2Z3H A; 3RZV A; 4OWP A; 1JTK A; 4JXE A; 2FR5 A; 2G84 A; 4OCM B; 1UWZ A; 2W4L A; 2B3J A; 4K1R A; 2D5N A; 2OBC A; 2ZNV A; 4EG2 A; 4MSQ A; 4P9C A; 2O95 A; 1CTT A; 3RZU A; 4P9D A; 4MSD A; 1MQ0 A; 2P87 A; 4KIT C; 2PW9 A; 5C2O A; 4LD4 A; 1UX1 A; 4O8X A; 1WKQ A; 5DCA J; 1ZAB A; 4LD2 A; 2KCQ A; 4E0Q A; 2P8R A; 4WIG A; 4PQT A; 4MSM A; 4MSJ A; 4OCM A; 3MPZ A; 3IJF X; 1AF2 A; 2B3Z A; 4NQL A; 1VQ2 A; 4BGD C; 2QLC A; 3ZPG A; 1OI0 A; 1R5T A; 2Z3J A; 4HRW A; 5M59 B; 5GAO A; 3ZPC A; 4ZFR A; 1ALN A; 4HRQ A; 2O7P A; 1UX0 A;
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