The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
60
|
structure length |
60
|
Chain Sequence |
MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of ribosomal protein L30 from Thermus thermophilus at 1.9 A resolution: conformational flexibility of the molecule.
pubmed doi rcsb |
| molecule keywords |
PROTEIN (RIBOSOMAL PROTEIN L30)
|
| molecule tags |
Ribosome
|
| source organism |
Thermus thermophilus
|
| total genus |
17
|
| structure length |
60
|
| sequence length |
60
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 1998-10-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00327 | Ribosomal_L30 | Ribosomal protein L30p/L7e |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribosomal Protein L30; Chain: A, | Ribosomal protein L30, ferredoxin-like fold domain |
#chains in the Genus database with same CATH superfamily 1KD1 X; 3G71 W; 5DM7 W; 1YI2 W; 1VQN W; 5GAD a; 1NJI X; 3CCL W; 1VQ9 W; 2OTL W; 1KC8 X; 1VQ4 W; 3CME W; 2QEX W; 1YJN W; 1Q7Y X; 2ZJP W; 3CCM W; 3CCS W; 1Q82 X; 1QVF V; 3G6E W; 3CCU W; 3CMA W; 1Q86 X; 3PIO W; 1K8A X; 5GAG a; 3G4S W; 1YIJ W; 4U67 W; 4WCE W; 4WFN W; 3CCR W; 1VQ5 W; 3CC4 W; 1YJ9 W; 2OTJ W; 1KQS V; 3I56 W; 4WFA W; 3CCJ W; 2ZJR W; 3CXC V; 4UY8 Z; 3DLL W; 1VQP W; 5GAE a; 5JVH W; 1JJ2 V; 1YHQ W; 3PIP W; 1YJW W; 5HL7 W; 4WF9 W; 5GAH a; 5DM6 W; 1VQ7 W; 3CC7 W; 1VQM W; 3CD6 W; 1K73 X; 1K9M X; 3OW2 V; 1VQ8 W; 3CCE W; 2QA4 W; 1S72 W; 4IO9 W; 4WFB W; 1M1K X; 1YIT W; 3CCV W; 3CPW V; 1N8R X; 1BXY A; 3I55 W; 1VQL W; 4IOC W; 1QVG V; 1W2B V; 3CC2 W; 5JVG W; 3CF5 W; 1VQK W; 1VQ6 W; 3J7Z Z; 3CCQ W; 1Q81 X; 1M90 X; 1VQO W; 4IOA W; 2ZJQ W; #chains in the Genus database with same CATH topology 1MBV B; 1KD1 X; 1CTF A; 3G71 W; 5DM7 W; 1YI2 W; 1VQN W; 4YJX A; 3G19 A; 4YKA A; 5GAD a; 1VQQ A; 5M18 A; 3CCL W; 1NJI X; 1VQ9 W; 2OTL W; 1KC8 X; 1R6Q C; 3W7U A; 3ZG0 A; 1VQ4 W; 1MWT A; 3CME W; 2QEX W; 1YJN W; 3GW1 A; 1Q7Y X; 3ZG5 A; 2ZJP W; 3CCM W; 3CCS W; 1Q82 X; 1QVF V; 3G6E W; 3CCU W; 5GW7 A; 2W9R A; 3G3P A; 3CMA W; 1Q86 X; 1DD3 A; 3PIO W; 1K8A X; 3O2O A; 5GAG a; 3G4S W; 3W7S A; 1YIJ W; 3DNJ A; 4U67 W; 3GQ0 A; 4WCE W; 4WFN W; 3CCR W; 1VQ5 W; 1R6O C; 4CJN A; 3CC4 W; 1YJ9 W; 2OTJ W; 1KQS V; 3I56 W; 4WFA W; 3GQ1 A; 3CCJ W; 2ZJR W; 3CXC V; 4UY8 Z; 3DLL W; 1VQP W; 3O2H A; 5GAE a; 5JVH W; 1MG9 A; 3O1F A; 1JJ2 V; 3O1F B; 1YHQ W; 2WA8 A; 1MBX C; 3PIP W; 1MBU C; 1RQU A; 1YJW W; 4DKI A; 5HL7 W; 1RQS A; 5GAH a; 5DM6 W; 4WF9 W; 1VQ7 W; 3CC7 W; 1VQM W; 1RQV A; 3CD6 W; 3D3I A; 1K73 X; 1K9M X; 1MWU A; 3OW2 V; 1VQ8 W; 3CCE W; 4BL2 A; 2QA4 W; 1S72 W; 1LZW A; 4IO9 W; 3ZFZ A; 3G1B A; 4YJM A; 4WFB W; 1M1K X; 1YIT W; 3CCV W; 3CPW V; 4BL3 A; 1N8R X; 3W7T A; 1BXY A; 3I55 W; 1VQL W; 1MWS A; 4IOC W; 1QVG V; 3O2B A; 2WA9 A; 1W2B V; 5M1A A; 3CC2 W; 3W7W A; 1DD4 A; 3W7X A; 5JVG W; 3CF5 W; 1VQK W; 1VQ6 W; 1MWR A; 3J7Z Z; 3CCQ W; 1Q81 X; 1M90 X; 4CPK A; 1VQO W; 5M19 A; 4IOA W; 5CA3 A; 2ZJQ W; #chains in the Genus database with same CATH homology 1KD1 X; 3G71 W; 5DM7 W; 1YI2 W; 1VQN W; 5GAD a; 1NJI X; 3CCL W; 1VQ9 W; 2OTL W; 1KC8 X; 1VQ4 W; 3CME W; 2QEX W; 1YJN W; 1Q7Y X; 2ZJP W; 3CCM W; 3CCS W; 1Q82 X; 1QVF V; 3G6E W; 3CCU W; 3CMA W; 1Q86 X; 3PIO W; 1K8A X; 5GAG a; 3G4S W; 1YIJ W; 4U67 W; 4WCE W; 4WFN W; 3CCR W; 1VQ5 W; 3CC4 W; 1YJ9 W; 2OTJ W; 1KQS V; 3I56 W; 4WFA W; 3CCJ W; 2ZJR W; 3CXC V; 4UY8 Z; 3DLL W; 1VQP W; 5GAE a; 5JVH W; 1JJ2 V; 1YHQ W; 3PIP W; 1YJW W; 5HL7 W; 4WF9 W; 5GAH a; 5DM6 W; 1VQ7 W; 3CC7 W; 1VQM W; 3CD6 W; 1K73 X; 1K9M X; 3OW2 V; 1VQ8 W; 3CCE W; 2QA4 W; 1S72 W; 4IO9 W; 4WFB W; 1M1K X; 1YIT W; 3CCV W; 3CPW V; 1N8R X; 1BXY A; 3I55 W; 1VQL W; 4IOC W; 1QVG V; 1W2B V; 3CC2 W; 5JVG W; 3CF5 W; 1VQK W; 1VQ6 W; 3J7Z Z; 3CCQ W; 1Q81 X; 1M90 X; 1VQO W; 4IOA W; 2ZJQ W;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
