2OTJW

13-deoxytedanolide bound to the large subunit of haloarcula marismortui
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S ribosomal RNA
total genus 52
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2007-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 2otjW02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 2otjW01
5GADa 5GAGa 3CC4W 3CMAW 2ZJRW 1M1KX 3CCSW 5DM7W 1VQMW 1YIJW 4WF9W 1S72W 3J7ZZ 3CCQW 5JVHW 1Q86X 3CCLW 3PIOW 3CCEW 4UY8Z 1QVFV 4WFNW 3CC2W 4WFBW 3G71W 3I56W 4U67W 4WFAW 1VQ5W 1VQ9W 5GAHa 1VQOW 4IOCW 1VQ4W 1NJIX 2QA4W 1KD1X 1YHQW 1K8AX 3CCMW 3OW2V 2ZJPW 1K9MX 1Q81X 1VQ7W 1VQ6W 1YITW 1KC8X 1VQPW 1VQ8W 1YJ9W 3CF5W 3CC7W 3G6EW 1N8RX 2QEXW 3G4SW 1BXYA 3CPWV 3CCJW 1VQKW 5GAEa 3CCUW 2OTJW 3CMEW 4WCEW 5JVGW 3CD6W 2OTLW 1QVGV 1M90X 3DLLW 1K73X 3CCRW 1Q7YX 3CXCV 5DM6W 1VQNW 1JJ2V 2ZJQW 4IOAW 1YJWW 3CCVW 1KQSV 3PIPW 1YI2W 1VQLW 5HL7W 1Q82X 3I55W 1W2BV 4IO9W 1YJNW
chains in the Genus database with same CATH superfamily
5GADa 5GW7A 5GAGa 3CC4W 3ZG5A 3ZFZA 3CMAW 2ZJRW 1M1KX 3D3IA 3CCSW 3DNJA 5DM7W 1VQMW 1YIJW 1MBUC 4WF9W 1S72W 3GQ1A 3J7ZZ 3O2BA 3CCQW 1DD4A 5JVHW 1Q86X 3CCLW 3PIOW 2WA8A 3CCEW 4UY8Z 1QVFV 3G1BA 3CC2W 4WFNW 4WFBW 3G71W 3I56W 4U67W 4WFAW 1VQ5W 1VQ9W 5GAHa 1VQOW 4IOCW 3GW1A 1VQ4W 1NJIX 4YJXA 2QA4W 1KD1X 1YHQW 1K8AX 3CCMW 1MBXC 1DD3A 3OW2V 2ZJPW 1MWUA 1K9MX 1Q81X 1RQVA 1VQ7W 2WA9A 5M1AA 1VQ6W 3W7SA 1RQUA 3O2HA 1MWRA 1YITW 1KC8X 3O1FA 1VQPW 1VQ8W 4C1NA 1YJ9W 3G19A 3CF5W 5M18A 3CC7W 3G6EW 1N8RX 2QEXW 3W7TA 3G4SW 5M19A 1BXYA 3CPWV 3CCJW 1LZWA 2W9RA 3GQ0A 1VQKW 5GAEa 3W7UA 3CCUW 1VQQA 1MG9A 2OTJW 3CMEW 1MBVB 5CA3A 4WCEW 5JVGW 3CD6W 2OTLW 1RQSA 4BL3A 4BL2A 3O1FB 4DKIA 1QVGV 1M90X 3DLLW 1K73X 3CCRW 1Q7YX 3CXCV 5DM6W 1CTFA 3W7WA 4CPKA 1VQNW 1JJ2V 2ZJQW 3O2OA 4YKAA 4IOAW 1YJWW 3CCVW 1KQSV 3PIPW 4YJMA 1YI2W 1VQLW 4CJNA 5HL7W 3G3PA 1Q82X 3I55W 1W2BV 3ZG0A 1R6QC 4IO9W 3W7XA 1MWTA 1MWSA 1R6OC 1YJNW
chains in the Genus database with same CATH topology
5GADa 5GAGa 3CC4W 3CMAW 2ZJRW 1M1KX 3CCSW 5DM7W 1VQMW 1YIJW 4WF9W 1S72W 3J7ZZ 3CCQW 5JVHW 1Q86X 3CCLW 3PIOW 3CCEW 4UY8Z 1QVFV 4WFNW 3CC2W 4WFBW 3G71W 3I56W 4U67W 4WFAW 1VQ5W 1VQ9W 5GAHa 1VQOW 4IOCW 1VQ4W 1NJIX 2QA4W 1KD1X 1YHQW 1K8AX 3CCMW 3OW2V 2ZJPW 1K9MX 1Q81X 1VQ7W 1VQ6W 1YITW 1KC8X 1VQPW 1VQ8W 4C1NA 1YJ9W 3CF5W 3CC7W 3G6EW 1N8RX 2QEXW 3G4SW 1BXYA 3CPWV 3CCJW 1VQKW 5GAEa 3CCUW 2OTJW 3CMEW 4WCEW 5JVGW 3CD6W 2OTLW 1QVGV 1M90X 3DLLW 1K73X 3CCRW 1Q7YX 3CXCV 5DM6W 1VQNW 1JJ2V 2ZJQW 4IOAW 1YJWW 3CCVW 1KQSV 3PIPW 1YI2W 1VQLW 5HL7W 1Q82X 3I55W 1W2BV 4IO9W 1YJNW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAD a;  5GAG a;  3CC4 W;  3CMA W;  2ZJR W;  1M1K X;  3CCS W;  5DM7 W;  1VQM W;  1YIJ W;  4WF9 W;  1S72 W;  3J7Z Z;  3CCQ W;  5JVH W;  1Q86 X;  3CCL W;  3PIO W;  3CCE W;  4UY8 Z;  1QVF V;  4WFN W;  3CC2 W;  4WFB W;  3G71 W;  3I56 W;  4U67 W;  4WFA W;  1VQ5 W;  1VQ9 W;  5GAH a;  1VQO W;  4IOC W;  1VQ4 W;  1NJI X;  2QA4 W;  1KD1 X;  1YHQ W;  1K8A X;  3CCM W;  3OW2 V;  2ZJP W;  1K9M X;  1Q81 X;  1VQ7 W;  1VQ6 W;  1YIT W;  1KC8 X;  1VQP W;  1VQ8 W;  1YJ9 W;  3CF5 W;  3CC7 W;  3G6E W;  1N8R X;  2QEX W;  3G4S W;  1BXY A;  3CPW V;  3CCJ W;  1VQK W;  5GAE a;  3CCU W;  2OTJ W;  3CME W;  4WCE W;  5JVG W;  3CD6 W;  2OTL W;  1QVG V;  1M90 X;  3DLL W;  1K73 X;  3CCR W;  1Q7Y X;  3CXC V;  5DM6 W;  1VQN W;  1JJ2 V;  2ZJQ W;  4IOA W;  1YJW W;  3CCV W;  1KQS V;  3PIP W;  1YI2 W;  1VQL W;  5HL7 W;  1Q82 X;  3I55 W;  1W2B V;  4IO9 W;  1YJN W; 
#chains in the Genus database with same CATH topology
 5GAD a;  5GW7 A;  5GAG a;  3CC4 W;  3ZG5 A;  3ZFZ A;  3CMA W;  2ZJR W;  1M1K X;  3D3I A;  3CCS W;  3DNJ A;  5DM7 W;  1VQM W;  1YIJ W;  1MBU C;  4WF9 W;  1S72 W;  3GQ1 A;  3J7Z Z;  3O2B A;  3CCQ W;  1DD4 A;  5JVH W;  1Q86 X;  3CCL W;  3PIO W;  2WA8 A;  3CCE W;  4UY8 Z;  1QVF V;  3G1B A;  3CC2 W;  4WFN W;  4WFB W;  3G71 W;  3I56 W;  4U67 W;  4WFA W;  1VQ5 W;  1VQ9 W;  5GAH a;  1VQO W;  4IOC W;  3GW1 A;  1VQ4 W;  1NJI X;  4YJX A;  2QA4 W;  1KD1 X;  1YHQ W;  1K8A X;  3CCM W;  1MBX C;  1DD3 A;  3OW2 V;  2ZJP W;  1MWU A;  1K9M X;  1Q81 X;  1RQV A;  1VQ7 W;  2WA9 A;  5M1A A;  1VQ6 W;  3W7S A;  1RQU A;  3O2H A;  1MWR A;  1YIT W;  1KC8 X;  3O1F A;  1VQP W;  1VQ8 W;  4C1N A;  1YJ9 W;  3G19 A;  3CF5 W;  5M18 A;  3CC7 W;  3G6E W;  1N8R X;  2QEX W;  3W7T A;  3G4S W;  5M19 A;  1BXY A;  3CPW V;  3CCJ W;  1LZW A;  2W9R A;  3GQ0 A;  1VQK W;  5GAE a;  3W7U A;  3CCU W;  1VQQ A;  1MG9 A;  2OTJ W;  3CME W;  1MBV B;  5CA3 A;  4WCE W;  5JVG W;  3CD6 W;  2OTL W;  1RQS A;  4BL3 A;  4BL2 A;  3O1F B;  4DKI A;  1QVG V;  1M90 X;  3DLL W;  1K73 X;  3CCR W;  1Q7Y X;  3CXC V;  5DM6 W;  1CTF A;  3W7W A;  4CPK A;  1VQN W;  1JJ2 V;  2ZJQ W;  3O2O A;  4YKA A;  4IOA W;  1YJW W;  3CCV W;  1KQS V;  3PIP W;  4YJM A;  1YI2 W;  1VQL W;  4CJN A;  5HL7 W;  3G3P A;  1Q82 X;  3I55 W;  1W2B V;  3ZG0 A;  1R6Q C;  4IO9 W;  3W7X A;  1MWT A;  1MWS A;  1R6O C;  1YJN W; 
#chains in the Genus database with same CATH homology
 5GAD a;  5GAG a;  3CC4 W;  3CMA W;  2ZJR W;  1M1K X;  3CCS W;  5DM7 W;  1VQM W;  1YIJ W;  4WF9 W;  1S72 W;  3J7Z Z;  3CCQ W;  5JVH W;  1Q86 X;  3CCL W;  3PIO W;  3CCE W;  4UY8 Z;  1QVF V;  4WFN W;  3CC2 W;  4WFB W;  3G71 W;  3I56 W;  4U67 W;  4WFA W;  1VQ5 W;  1VQ9 W;  5GAH a;  1VQO W;  4IOC W;  1VQ4 W;  1NJI X;  2QA4 W;  1KD1 X;  1YHQ W;  1K8A X;  3CCM W;  3OW2 V;  2ZJP W;  1K9M X;  1Q81 X;  1VQ7 W;  1VQ6 W;  1YIT W;  1KC8 X;  1VQP W;  1VQ8 W;  4C1N A;  1YJ9 W;  3CF5 W;  3CC7 W;  3G6E W;  1N8R X;  2QEX W;  3G4S W;  1BXY A;  3CPW V;  3CCJ W;  1VQK W;  5GAE a;  3CCU W;  2OTJ W;  3CME W;  4WCE W;  5JVG W;  3CD6 W;  2OTL W;  1QVG V;  1M90 X;  3DLL W;  1K73 X;  3CCR W;  1Q7Y X;  3CXC V;  5DM6 W;  1VQN W;  1JJ2 V;  2ZJQ W;  4IOA W;  1YJW W;  3CCV W;  1KQS V;  3PIP W;  1YI2 W;  1VQL W;  5HL7 W;  1Q82 X;  3I55 W;  1W2B V;  4IO9 W;  1YJN W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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