1K9MX

Co-crystal structure of tylosin bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
154
structure length
154
Chain Sequence
MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAMR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S RRNA
total genus 47
structure length 154
sequence length 154
ec nomenclature
pdb deposition date 2001-10-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
X PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II; Chain A, domain 3 3-methyladenine DNA Glycosylase II; Chain A, domain 3 1k9mX02
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 1k9mX01
1YJWW 1M1KX 1VQ4W 5JVHW 1YHQW 1VQKW 1JJ2V 1W2BV 2ZJRW 3J7ZZ 1VQMW 4IO9W 4UY8Z 3DLLW 2OTJW 3CCUW 1NJIX 3CCJW 1Q86X 1VQNW 5DM6W 4WFBW 3CCRW 1KC8X 2QA4W 1VQ7W 3CMAW 5GAEa 1Q81X 1Q82X 3CXCV 1BXYA 1K8AX 1VQOW 1QVFV 4WCEW 1YIJW 3G6EW 4WF9W 3CCQW 3CPWV 3CC4W 1KD1X 5GADa 5HL7W 2QEXW 5GAGa 3CCVW 1M90X 4IOAW 4IOCW 3CF5W 1K73X 3CC2W 2ZJQW 3I56W 3G71W 1VQ8W 1VQ5W 3CCLW 1YJNW 4WFNW 3PIPW 2ZJPW 1VQ6W 3CCMW 1VQPW 3CC7W 3OW2V 1N8RX 3PIOW 4U67W 1YI2W 4WFAW 1VQ9W 1YITW 3CCEW 3CD6W 1VQLW 1K9MX 1KQSV 3I55W 2OTLW 5GAHa 5DM7W 5JVGW 3CMEW 3G4SW 1YJ9W 1Q7YX 1S72W 1QVGV 3CCSW
chains in the Genus database with same CATH superfamily
1YJWW 3W7WA 1M1KX 1DD3A 1VQ4W 5JVHW 1YHQW 1VQKW 3ZFZA 1JJ2V 4YJXA 1W2BV 1LZWA 4C1NA 2ZJRW 3J7ZZ 1DD4A 3D3IA 3ZG5A 1VQMW 2W9RA 1VQQA 4IO9W 2WA9A 3GQ1A 1MWTA 4UY8Z 3DLLW 2OTJW 3CCUW 3ZG0A 1NJIX 1R6QC 3G1BA 3CCJW 3O1FB 4BL2A 1Q86X 1VQNW 5DM6W 4WFBW 1MWSA 5GW7A 3CCRW 3DNJA 5M1AA 3W7SA 4BL3A 1KC8X 2QA4W 1VQ7W 3CMAW 5GAEa 3G3PA 1Q81X 1MWUA 1Q82X 3O2OA 3CXCV 1BXYA 3GQ0A 1K8AX 1VQOW 1QVFV 1MWRA 4WCEW 1YIJW 4YJMA 1MBUC 4CJNA 3G6EW 4WF9W 3CCQW 3CPWV 3CC4W 1KD1X 5GADa 5HL7W 2QEXW 1RQUA 5M18A 5GAGa 3CCVW 1M90X 4IOAW 4IOCW 3CF5W 1K73X 3CC2W 2ZJQW 1MBVB 3GW1A 3I56W 3G71W 1VQ8W 1VQ5W 1R6OC 3CCLW 1YJNW 4WFNW 3PIPW 3W7UA 1VQ6W 3CCMW 1VQPW 3CC7W 1CTFA 2ZJPW 1MBXC 3OW2V 1N8RX 1RQVA 4DKIA 3W7TA 3PIOW 3W7XA 4U67W 3O1FA 3O2HA 1YI2W 4WFAW 3O2BA 5CA3A 1VQ9W 1YITW 3CCEW 5M19A 3CD6W 1VQLW 1K9MX 1KQSV 3I55W 4YKAA 2OTLW 5GAHa 4CPKA 5DM7W 5JVGW 3CMEW 1MG9A 3G4SW 2WA8A 1YJ9W 1Q7YX 3G19A 1RQSA 1S72W 1QVGV 3CCSW
chains in the Genus database with same CATH topology
1YJWW 1M1KX 1VQ4W 5JVHW 1YHQW 1VQKW 1JJ2V 1W2BV 4C1NA 2ZJRW 3J7ZZ 1VQMW 4IO9W 4UY8Z 3DLLW 2OTJW 3CCUW 1NJIX 3CCJW 1Q86X 1VQNW 5DM6W 4WFBW 3CCRW 1KC8X 2QA4W 1VQ7W 3CMAW 5GAEa 1Q81X 1Q82X 3CXCV 1BXYA 1K8AX 1VQOW 1QVFV 4WCEW 1YIJW 3G6EW 4WF9W 3CCQW 3CPWV 3CC4W 1KD1X 5GADa 5HL7W 2QEXW 5GAGa 3CCVW 1M90X 4IOAW 4IOCW 3CF5W 1K73X 3CC2W 2ZJQW 3I56W 3G71W 1VQ8W 1VQ5W 3CCLW 1YJNW 4WFNW 3PIPW 2ZJPW 1VQ6W 3CCMW 1VQPW 3CC7W 3OW2V 1N8RX 3PIOW 4U67W 1YI2W 4WFAW 1VQ9W 1YITW 3CCEW 3CD6W 1VQLW 1K9MX 1KQSV 3I55W 2OTLW 5GAHa 5DM7W 5JVGW 3CMEW 3G4SW 1YJ9W 1Q7YX 1S72W 1QVGV 3CCSW
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YJW W;  1M1K X;  1VQ4 W;  5JVH W;  1YHQ W;  1VQK W;  1JJ2 V;  1W2B V;  2ZJR W;  3J7Z Z;  1VQM W;  4IO9 W;  4UY8 Z;  3DLL W;  2OTJ W;  3CCU W;  1NJI X;  3CCJ W;  1Q86 X;  1VQN W;  5DM6 W;  4WFB W;  3CCR W;  1KC8 X;  2QA4 W;  1VQ7 W;  3CMA W;  5GAE a;  1Q81 X;  1Q82 X;  3CXC V;  1BXY A;  1K8A X;  1VQO W;  1QVF V;  4WCE W;  1YIJ W;  3G6E W;  4WF9 W;  3CCQ W;  3CPW V;  3CC4 W;  1KD1 X;  5GAD a;  5HL7 W;  2QEX W;  5GAG a;  3CCV W;  1M90 X;  4IOA W;  4IOC W;  3CF5 W;  1K73 X;  3CC2 W;  2ZJQ W;  3I56 W;  3G71 W;  1VQ8 W;  1VQ5 W;  3CCL W;  1YJN W;  4WFN W;  3PIP W;  2ZJP W;  1VQ6 W;  3CCM W;  1VQP W;  3CC7 W;  3OW2 V;  1N8R X;  3PIO W;  4U67 W;  1YI2 W;  4WFA W;  1VQ9 W;  1YIT W;  3CCE W;  3CD6 W;  1VQL W;  1K9M X;  1KQS V;  3I55 W;  2OTL W;  5GAH a;  5DM7 W;  5JVG W;  3CME W;  3G4S W;  1YJ9 W;  1Q7Y X;  1S72 W;  1QVG V;  3CCS W; 
#chains in the Genus database with same CATH topology
 1YJW W;  3W7W A;  1M1K X;  1DD3 A;  1VQ4 W;  5JVH W;  1YHQ W;  1VQK W;  3ZFZ A;  1JJ2 V;  4YJX A;  1W2B V;  1LZW A;  4C1N A;  2ZJR W;  3J7Z Z;  1DD4 A;  3D3I A;  3ZG5 A;  1VQM W;  2W9R A;  1VQQ A;  4IO9 W;  2WA9 A;  3GQ1 A;  1MWT A;  4UY8 Z;  3DLL W;  2OTJ W;  3CCU W;  3ZG0 A;  1NJI X;  1R6Q C;  3G1B A;  3CCJ W;  3O1F B;  4BL2 A;  1Q86 X;  1VQN W;  5DM6 W;  4WFB W;  1MWS A;  5GW7 A;  3CCR W;  3DNJ A;  5M1A A;  3W7S A;  4BL3 A;  1KC8 X;  2QA4 W;  1VQ7 W;  3CMA W;  5GAE a;  3G3P A;  1Q81 X;  1MWU A;  1Q82 X;  3O2O A;  3CXC V;  1BXY A;  3GQ0 A;  1K8A X;  1VQO W;  1QVF V;  1MWR A;  4WCE W;  1YIJ W;  4YJM A;  1MBU C;  4CJN A;  3G6E W;  4WF9 W;  3CCQ W;  3CPW V;  3CC4 W;  1KD1 X;  5GAD a;  5HL7 W;  2QEX W;  1RQU A;  5M18 A;  5GAG a;  3CCV W;  1M90 X;  4IOA W;  4IOC W;  3CF5 W;  1K73 X;  3CC2 W;  2ZJQ W;  1MBV B;  3GW1 A;  3I56 W;  3G71 W;  1VQ8 W;  1VQ5 W;  1R6O C;  3CCL W;  1YJN W;  4WFN W;  3PIP W;  3W7U A;  1VQ6 W;  3CCM W;  1VQP W;  3CC7 W;  1CTF A;  2ZJP W;  1MBX C;  3OW2 V;  1N8R X;  1RQV A;  4DKI A;  3W7T A;  3PIO W;  3W7X A;  4U67 W;  3O1F A;  3O2H A;  1YI2 W;  4WFA W;  3O2B A;  5CA3 A;  1VQ9 W;  1YIT W;  3CCE W;  5M19 A;  3CD6 W;  1VQL W;  1K9M X;  1KQS V;  3I55 W;  4YKA A;  2OTL W;  5GAH a;  4CPK A;  5DM7 W;  5JVG W;  3CME W;  1MG9 A;  3G4S W;  2WA8 A;  1YJ9 W;  1Q7Y X;  3G19 A;  1RQS A;  1S72 W;  1QVG V;  3CCS W; 
#chains in the Genus database with same CATH homology
 1YJW W;  1M1K X;  1VQ4 W;  5JVH W;  1YHQ W;  1VQK W;  1JJ2 V;  1W2B V;  4C1N A;  2ZJR W;  3J7Z Z;  1VQM W;  4IO9 W;  4UY8 Z;  3DLL W;  2OTJ W;  3CCU W;  1NJI X;  3CCJ W;  1Q86 X;  1VQN W;  5DM6 W;  4WFB W;  3CCR W;  1KC8 X;  2QA4 W;  1VQ7 W;  3CMA W;  5GAE a;  1Q81 X;  1Q82 X;  3CXC V;  1BXY A;  1K8A X;  1VQO W;  1QVF V;  4WCE W;  1YIJ W;  3G6E W;  4WF9 W;  3CCQ W;  3CPW V;  3CC4 W;  1KD1 X;  5GAD a;  5HL7 W;  2QEX W;  5GAG a;  3CCV W;  1M90 X;  4IOA W;  4IOC W;  3CF5 W;  1K73 X;  3CC2 W;  2ZJQ W;  3I56 W;  3G71 W;  1VQ8 W;  1VQ5 W;  3CCL W;  1YJN W;  4WFN W;  3PIP W;  2ZJP W;  1VQ6 W;  3CCM W;  1VQP W;  3CC7 W;  3OW2 V;  1N8R X;  3PIO W;  4U67 W;  1YI2 W;  4WFA W;  1VQ9 W;  1YIT W;  3CCE W;  3CD6 W;  1VQL W;  1K9M X;  1KQS V;  3I55 W;  2OTL W;  5GAH a;  5DM7 W;  5JVG W;  3CME W;  3G4S W;  1YJ9 W;  1Q7Y X;  1S72 W;  1QVG V;  3CCS W; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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