1MBUC

Crystal structure analysis of clpsn heterodimer
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
86
structure length
86
Chain Sequence
ALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH2 (55-68)S1 (27-33)EMPTYS2 (70-77)AH1 (40-51)TIV1 (35-38)AH3 (78-95)Updating...
connected with : NaN
molecule tags Protein binding
publication title Crystal Structure of the Heterodimeric Complex of the Adaptor, ClpS, with the N-domain of the AAA+ Chaperone, ClpA
pubmed doi rcsb
molecule keywords ATP-Dependent clp Protease ATP-Binding Subunit clp A
total genus 27
structure length 86
sequence length 86
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1mbuC00
2WA9A 2W9RA 2WA8A 1RQSA 3O2BA 4YKAA 1MBVB 3G3PA 3O2OA 3GQ1A 3GQ0A 3DNJA 1MG9A 3O1FB 1RQVA 3G1BA 1LZWA 1MBUC 3GW1A 4YJMA 1MBXC 3G19A 1DD4A 3O1FA 1RQUA 1R6QC 1R6OC 1DD3A 4YJXA 1CTFA 3O2HA
chains in the Genus database with same CATH superfamily
3G4SW 3CCJW 1K73X 2W9RA 1RQSA 3O2BA 1Q81X 3GQ1A 3CF5W 1VQQA 1YI2W 3G71W 5M1AA 4DKIA 3CC2W 1MG9A 5GAHa 3O1FB 3I55W 3G1BA 1LZWA 1VQ8W 1VQMW 1VQOW 1QVFV 1DD4A 5CA3A 3O1FA 1VQ6W 1VQPW 1DD3A 1MWTA 4YJXA 4WFNW 3CPWV 3CCEW 5JVGW 3ZG5A 3CD6W 5GAGa 2QA4W 2WA9A 4BL2A 3CXCV 4YKAA 3G3PA 4CPKA 3PIPW 5DM7W 1N8RX 3W7TA 4CJNA 4WFBW 3GQ0A 1KC8X 1YJ9W 3DNJA 3W7UA 1YIJW 1YJNW 1QVGV 2OTLW 3ZG0A 3CCMW 3CCSW 1RQVA 1VQ9W 3PIOW 4IO9W 4IOCW 5GADa 4BL3A 1RQUA 3CC4W 3CCRW 1CTFA 3O2HA 1MWUA 1Q7YX 1M1KX 3CCVW 2QEXW 1Q82X 1VQNW 1MBVB 3O2OA 4WFAW 1K9MX 4IOAW 3G6EW 3W7WA 1KQSV 1Q86X 1VQKW 1BXYA 5JVHW 2OTJW 1S72W 1MBUC 3ZFZA 1MBXC 1K8AX 3G19A 3I56W 3CMAW 1VQ5W 1R6OC 1VQLW 3CC7W 1W2BV 4WF9W 5DM6W 5M19A 1M90X 3CCLW 3D3IA 5GW7A 3CMEW 1VQ4W 2WA8A 1JJ2V 1KD1X 3DLLW 3OW2V 1MWSA 5HL7W 3CCUW 2ZJRW 5GAEa 3CCQW 2ZJQW 3W7XA 3GW1A 4YJMA 1YJWW 1NJIX 1YHQW 4U67W 1R6QC 4WCEW 3J7ZZ 1VQ7W 5M18A 2ZJPW 1YITW 3W7SA 4UY8Z 1MWRA
chains in the Genus database with same CATH topology
2WA9A 2W9RA 2WA8A 1RQSA 3O2BA 4YKAA 1MBVB 3G3PA 3O2OA 3GQ1A 3GQ0A 3DNJA 1MG9A 3O1FB 1RQVA 3G1BA 1LZWA 1MBUC 3GW1A 4YJMA 1MBXC 3G19A 1DD4A 3O1FA 1RQUA 1R6QC 1R6OC 1DD3A 4YJXA 1CTFA 3O2HA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2WA9 A;  2W9R A;  2WA8 A;  1RQS A;  3O2B A;  4YKA A;  1MBV B;  3G3P A;  3O2O A;  3GQ1 A;  3GQ0 A;  3DNJ A;  1MG9 A;  3O1F B;  1RQV A;  3G1B A;  1LZW A;  1MBU C;  3GW1 A;  4YJM A;  1MBX C;  3G19 A;  1DD4 A;  3O1F A;  1RQU A;  1R6Q C;  1R6O C;  1DD3 A;  4YJX A;  1CTF A;  3O2H A; 
#chains in the Genus database with same CATH topology
 3G4S W;  3CCJ W;  1K73 X;  2W9R A;  1RQS A;  3O2B A;  1Q81 X;  3GQ1 A;  3CF5 W;  1VQQ A;  1YI2 W;  3G71 W;  5M1A A;  4DKI A;  3CC2 W;  1MG9 A;  5GAH a;  3O1F B;  3I55 W;  3G1B A;  1LZW A;  1VQ8 W;  1VQM W;  1VQO W;  1QVF V;  1DD4 A;  5CA3 A;  3O1F A;  1VQ6 W;  1VQP W;  1DD3 A;  1MWT A;  4YJX A;  4WFN W;  3CPW V;  3CCE W;  5JVG W;  3ZG5 A;  3CD6 W;  5GAG a;  2QA4 W;  2WA9 A;  4BL2 A;  3CXC V;  4YKA A;  3G3P A;  4CPK A;  3PIP W;  5DM7 W;  1N8R X;  3W7T A;  4CJN A;  4WFB W;  3GQ0 A;  1KC8 X;  1YJ9 W;  3DNJ A;  3W7U A;  1YIJ W;  1YJN W;  1QVG V;  2OTL W;  3ZG0 A;  3CCM W;  3CCS W;  1RQV A;  1VQ9 W;  3PIO W;  4IO9 W;  4IOC W;  5GAD a;  4BL3 A;  1RQU A;  3CC4 W;  3CCR W;  1CTF A;  3O2H A;  1MWU A;  1Q7Y X;  1M1K X;  3CCV W;  2QEX W;  1Q82 X;  1VQN W;  1MBV B;  3O2O A;  4WFA W;  1K9M X;  4IOA W;  3G6E W;  3W7W A;  1KQS V;  1Q86 X;  1VQK W;  1BXY A;  5JVH W;  2OTJ W;  1S72 W;  1MBU C;  3ZFZ A;  1MBX C;  1K8A X;  3G19 A;  3I56 W;  3CMA W;  1VQ5 W;  1R6O C;  1VQL W;  3CC7 W;  1W2B V;  4WF9 W;  5DM6 W;  5M19 A;  1M90 X;  3CCL W;  3D3I A;  5GW7 A;  3CME W;  1VQ4 W;  2WA8 A;  1JJ2 V;  1KD1 X;  3DLL W;  3OW2 V;  1MWS A;  5HL7 W;  3CCU W;  2ZJR W;  5GAE a;  3CCQ W;  2ZJQ W;  3W7X A;  3GW1 A;  4YJM A;  1YJW W;  1NJI X;  1YHQ W;  4U67 W;  1R6Q C;  4WCE W;  3J7Z Z;  1VQ7 W;  5M18 A;  2ZJP W;  1YIT W;  3W7S A;  4UY8 Z;  1MWR A; 
#chains in the Genus database with same CATH homology
 2WA9 A;  2W9R A;  2WA8 A;  1RQS A;  3O2B A;  4YKA A;  1MBV B;  3G3P A;  3O2O A;  3GQ1 A;  3GQ0 A;  3DNJ A;  1MG9 A;  3O1F B;  1RQV A;  3G1B A;  1LZW A;  1MBU C;  3GW1 A;  4YJM A;  1MBX C;  3G19 A;  1DD4 A;  3O1F A;  1RQU A;  1R6Q C;  1R6O C;  1DD3 A;  4YJX A;  1CTF A;  3O2H A;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.