1MBVB

Crystal structure analysis of clpsn heterodimer tetragonal form
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
86
structure length
86
Chain Sequence
ALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (27-33)AH2 (55-68)EMPTYS2 (70-77)TI1 (35-38)AH1 (40-51)AH3 (78-95)Updating...
connected with : NaN
molecule tags Protein binding
source organism Escherichia coli
publication title Crystal Structure of the Heterodimeric Complex of the Adaptor, ClpS, with the N-domain of AAA+ Chaperone ClpA
pubmed doi rcsb
molecule keywords ATP-Dependent clp Protease ATP-Binding Subunit clp A
total genus 25
structure length 86
sequence length 86
ec nomenclature
pdb deposition date 2002-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1mbvB00
1R6OC 2WA8A 1DD3A 1RQUA 3GQ1A 3O1FB 3GQ0A 1LZWA 3G1BA 4YKAA 2W9RA 2WA9A 3G3PA 1R6QC 1MG9A 1CTFA 3DNJA 4YJXA 3G19A 3O2BA 1RQVA 1MBUC 1MBVB 3O2OA 4YJMA 1DD4A 1RQSA 3GW1A 3O2HA 3O1FA 1MBXC
chains in the Genus database with same CATH superfamily
5GAHa 3W7XA 1YIJW 3CC2W 1VQ5W 2QA4W 3CCRW 3CCSW 3O1FB 1YITW 4CPKA 4CJNA 3CCEW 1Q82X 3OW2V 1R6QC 1Q86X 1MWTA 1VQPW 1VQNW 1M1KX 3G19A 3O2BA 1RQVA 5DM6W 1K73X 5GW7A 2ZJPW 3O2OA 3CMEW 4IO9W 3GW1A 3PIPW 1YI2W 5GAEa 1VQQA 4BL3A 1N8RX 4WFBW 1YJNW 1VQOW 3ZG0A 2QEXW 3DLLW 3GQ0A 1LZWA 3G1BA 1JJ2V 1YJ9W 1MWSA 1KC8X 3W7TA 1QVGV 3DNJA 4IOAW 1M90X 2ZJQW 2ZJRW 1MBUC 4YJMA 3CCJW 3O1FA 3W7WA 3CCMW 3CC7W 5GADa 3PIOW 1VQMW 1K9MX 1Q7YX 5JVHW 3W7UA 4DKIA 3G6EW 1R6OC 2WA8A 3CMAW 1S72W 1W2BV 3CCVW 3CC4W 1YJWW 1RQUA 1MWRA 3W7SA 3CXCV 4WCEW 4YKAA 2WA9A 3I55W 3G3PA 1VQ7W 5DM7W 1QVFV 1K8AX 1VQ9W 1MBVB 1RQSA 5M1AA 3CD6W 3ZFZA 3ZG5A 5JVGW 1YHQW 1NJIX 3G4SW 1VQLW 3D3IA 1VQ8W 4WFNW 2OTJW 1VQ4W 4BL2A 5M18A 1DD3A 5M19A 3GQ1A 3CCQW 5CA3A 4WFAW 3I56W 2W9RA 3CF5W 3CCLW 4WF9W 1Q81X 1VQ6W 1MG9A 1CTFA 5GAGa 5HL7W 4U67W 3CPWV 1BXYA 4YJXA 3G71W 1MWUA 3CCUW 4UY8Z 1KD1X 1KQSV 1VQKW 2OTLW 1DD4A 3O2HA 1MBXC 3J7ZZ 4IOCW
chains in the Genus database with same CATH topology
1R6OC 2WA8A 1DD3A 1RQUA 3GQ1A 3O1FB 3GQ0A 1LZWA 3G1BA 4YKAA 2W9RA 2WA9A 3G3PA 1R6QC 1MG9A 1CTFA 3DNJA 4YJXA 3G19A 3O2BA 1RQVA 1MBUC 1MBVB 3O2OA 4YJMA 1DD4A 1RQSA 3GW1A 3O2HA 3O1FA 1MBXC
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1R6O C;  2WA8 A;  1DD3 A;  1RQU A;  3GQ1 A;  3O1F B;  3GQ0 A;  1LZW A;  3G1B A;  4YKA A;  2W9R A;  2WA9 A;  3G3P A;  1R6Q C;  1MG9 A;  1CTF A;  3DNJ A;  4YJX A;  3G19 A;  3O2B A;  1RQV A;  1MBU C;  1MBV B;  3O2O A;  4YJM A;  1DD4 A;  1RQS A;  3GW1 A;  3O2H A;  3O1F A;  1MBX C; 
#chains in the Genus database with same CATH topology
 5GAH a;  3W7X A;  1YIJ W;  3CC2 W;  1VQ5 W;  2QA4 W;  3CCR W;  3CCS W;  3O1F B;  1YIT W;  4CPK A;  4CJN A;  3CCE W;  1Q82 X;  3OW2 V;  1R6Q C;  1Q86 X;  1MWT A;  1VQP W;  1VQN W;  1M1K X;  3G19 A;  3O2B A;  1RQV A;  5DM6 W;  1K73 X;  5GW7 A;  2ZJP W;  3O2O A;  3CME W;  4IO9 W;  3GW1 A;  3PIP W;  1YI2 W;  5GAE a;  1VQQ A;  4BL3 A;  1N8R X;  4WFB W;  1YJN W;  1VQO W;  3ZG0 A;  2QEX W;  3DLL W;  3GQ0 A;  1LZW A;  3G1B A;  1JJ2 V;  1YJ9 W;  1MWS A;  1KC8 X;  3W7T A;  1QVG V;  3DNJ A;  4IOA W;  1M90 X;  2ZJQ W;  2ZJR W;  1MBU C;  4YJM A;  3CCJ W;  3O1F A;  3W7W A;  3CCM W;  3CC7 W;  5GAD a;  3PIO W;  1VQM W;  1K9M X;  1Q7Y X;  5JVH W;  3W7U A;  4DKI A;  3G6E W;  1R6O C;  2WA8 A;  3CMA W;  1S72 W;  1W2B V;  3CCV W;  3CC4 W;  1YJW W;  1RQU A;  1MWR A;  3W7S A;  3CXC V;  4WCE W;  4YKA A;  2WA9 A;  3I55 W;  3G3P A;  1VQ7 W;  5DM7 W;  1QVF V;  1K8A X;  1VQ9 W;  1MBV B;  1RQS A;  5M1A A;  3CD6 W;  3ZFZ A;  3ZG5 A;  5JVG W;  1YHQ W;  1NJI X;  3G4S W;  1VQL W;  3D3I A;  1VQ8 W;  4WFN W;  2OTJ W;  1VQ4 W;  4BL2 A;  5M18 A;  1DD3 A;  5M19 A;  3GQ1 A;  3CCQ W;  5CA3 A;  4WFA W;  3I56 W;  2W9R A;  3CF5 W;  3CCL W;  4WF9 W;  1Q81 X;  1VQ6 W;  1MG9 A;  1CTF A;  5GAG a;  5HL7 W;  4U67 W;  3CPW V;  1BXY A;  4YJX A;  3G71 W;  1MWU A;  3CCU W;  4UY8 Z;  1KD1 X;  1KQS V;  1VQK W;  2OTL W;  1DD4 A;  3O2H A;  1MBX C;  3J7Z Z;  4IOC W; 
#chains in the Genus database with same CATH homology
 1R6O C;  2WA8 A;  1DD3 A;  1RQU A;  3GQ1 A;  3O1F B;  3GQ0 A;  1LZW A;  3G1B A;  4YKA A;  2W9R A;  2WA9 A;  3G3P A;  1R6Q C;  1MG9 A;  1CTF A;  3DNJ A;  4YJX A;  3G19 A;  3O2B A;  1RQV A;  1MBU C;  1MBV B;  3O2O A;  4YJM A;  1DD4 A;  1RQS A;  3GW1 A;  3O2H A;  3O1F A;  1MBX C;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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