1MBXC

Crystal structure analysis of clpsn with transition metal ion bound
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
87
structure length
87
Chain Sequence
DALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (27-33)S2 (70-77)AH2 (55-68)TI1 (35-38)EMPTYAH1 (40-51)AH3 (78-95)Updating...
connected with : NaN
molecule tags Protein binding
source organism Escherichia coli
publication title Crystal Structure of the Heterodimeric Complex of the Adaptor, ClpS, with the N-domain of the AAA+ Chaperone, ClpA
pubmed doi rcsb
molecule keywords ATP-Dependent clp Protease ATP-Binding Subunit clp A
total genus 26
structure length 87
sequence length 87
chains with identical sequence D
ec nomenclature
pdb deposition date 2002-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1mbxC00
3GQ1A 1CTFA 3G1BA 3G19A 1R6OC 3O1FB 2WA9A 3O1FA 1MG9A 1RQUA 4YJMA 4YJXA 3GW1A 3DNJA 3O2OA 1RQVA 1RQSA 1R6QC 1MBVB 1MBUC 1DD4A 4YKAA 1LZWA 2W9RA 3GQ0A 3O2BA 1DD3A 3O2HA 1MBXC 3G3PA 2WA8A
chains in the Genus database with same CATH superfamily
3GQ1A 4DKIA 5JVGW 1CTFA 1KQSV 2ZJQW 1YITW 1R6OC 3O1FA 4U67W 3I56W 1W2BV 5GAHa 3DNJA 4CJNA 1QVFV 1NJIX 1VQ9W 3D3IA 3CPWV 2QA4W 4WF9W 3CD6W 3ZG0A 5M19A 5M1AA 3CCVW 3CF5W 4BL3A 5M18A 3CCSW 3CCJW 3O2HA 3PIOW 2WA8A 3G1BA 3CCUW 1VQMW 3CCRW 4IOCW 1VQPW 1M1KX 4YJXA 1Q86X 1N8RX 3O2OA 1RQVA 3I55W 3W7SA 5DM7W 4WCEW 1MBVB 1DD4A 4YKAA 3CXCV 1BXYA 4IO9W 1VQ4W 3G4SW 1KD1X 2W9RA 3CCEW 1VQ5W 1MWTA 5HL7W 3O2BA 1DD3A 1S72W 3G3PA 3OW2V 1JJ2V 1Q7YX 4IOAW 3G19A 1YJNW 4WFAW 1Q81X 2WA9A 1VQ8W 1MG9A 1VQ6W 3G71W 4YJMA 3PIPW 3GW1A 1VQLW 3CCMW 1YI2W 1MWUA 3ZFZA 4UY8Z 1YHQW 2OTJW 3CC2W 1R6QC 3CCQW 2OTLW 3J7ZZ 1YJ9W 3CCLW 4BL2A 1LZWA 1MWSA 3W7TA 1VQOW 3W7UA 3CMEW 3CC7W 3CC4W 1K9MX 5GAGa 3W7WA 1MBXC 4CPKA 1KC8X 1Q82X 1VQ7W 5DM6W 1M90X 5GAEa 1K73X 3O1FB 1YJWW 2ZJPW 1RQUA 5CA3A 1YIJW 4WFNW 3DLLW 5JVHW 1VQQA 3ZG5A 5GW7A 1RQSA 1VQNW 1K8AX 1MBUC 1MWRA 5GADa 3CMAW 1QVGV 2QEXW 1VQKW 3G6EW 2ZJRW 3W7XA 3GQ0A 4WFBW
chains in the Genus database with same CATH topology
3GQ1A 1CTFA 3G1BA 3G19A 1R6OC 3O1FB 2WA9A 3O1FA 1MG9A 1RQUA 4YJMA 4YJXA 3GW1A 3DNJA 3O2OA 1RQVA 1RQSA 1R6QC 1MBVB 1MBUC 1DD4A 4YKAA 1LZWA 2W9RA 3GQ0A 3O2BA 1DD3A 3O2HA 1MBXC 3G3PA 2WA8A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3GQ1 A;  1CTF A;  3G1B A;  3G19 A;  1R6O C;  3O1F B;  2WA9 A;  3O1F A;  1MG9 A;  1RQU A;  4YJM A;  4YJX A;  3GW1 A;  3DNJ A;  3O2O A;  1RQV A;  1RQS A;  1R6Q C;  1MBV B;  1MBU C;  1DD4 A;  4YKA A;  1LZW A;  2W9R A;  3GQ0 A;  3O2B A;  1DD3 A;  3O2H A;  1MBX C;  3G3P A;  2WA8 A; 
#chains in the Genus database with same CATH topology
 3GQ1 A;  4DKI A;  5JVG W;  1CTF A;  1KQS V;  2ZJQ W;  1YIT W;  1R6O C;  3O1F A;  4U67 W;  3I56 W;  1W2B V;  5GAH a;  3DNJ A;  4CJN A;  1QVF V;  1NJI X;  1VQ9 W;  3D3I A;  3CPW V;  2QA4 W;  4WF9 W;  3CD6 W;  3ZG0 A;  5M19 A;  5M1A A;  3CCV W;  3CF5 W;  4BL3 A;  5M18 A;  3CCS W;  3CCJ W;  3O2H A;  3PIO W;  2WA8 A;  3G1B A;  3CCU W;  1VQM W;  3CCR W;  4IOC W;  1VQP W;  1M1K X;  4YJX A;  1Q86 X;  1N8R X;  3O2O A;  1RQV A;  3I55 W;  3W7S A;  5DM7 W;  4WCE W;  1MBV B;  1DD4 A;  4YKA A;  3CXC V;  1BXY A;  4IO9 W;  1VQ4 W;  3G4S W;  1KD1 X;  2W9R A;  3CCE W;  1VQ5 W;  1MWT A;  5HL7 W;  3O2B A;  1DD3 A;  1S72 W;  3G3P A;  3OW2 V;  1JJ2 V;  1Q7Y X;  4IOA W;  3G19 A;  1YJN W;  4WFA W;  1Q81 X;  2WA9 A;  1VQ8 W;  1MG9 A;  1VQ6 W;  3G71 W;  4YJM A;  3PIP W;  3GW1 A;  1VQL W;  3CCM W;  1YI2 W;  1MWU A;  3ZFZ A;  4UY8 Z;  1YHQ W;  2OTJ W;  3CC2 W;  1R6Q C;  3CCQ W;  2OTL W;  3J7Z Z;  1YJ9 W;  3CCL W;  4BL2 A;  1LZW A;  1MWS A;  3W7T A;  1VQO W;  3W7U A;  3CME W;  3CC7 W;  3CC4 W;  1K9M X;  5GAG a;  3W7W A;  1MBX C;  4CPK A;  1KC8 X;  1Q82 X;  1VQ7 W;  5DM6 W;  1M90 X;  5GAE a;  1K73 X;  3O1F B;  1YJW W;  2ZJP W;  1RQU A;  5CA3 A;  1YIJ W;  4WFN W;  3DLL W;  5JVH W;  1VQQ A;  3ZG5 A;  5GW7 A;  1RQS A;  1VQN W;  1K8A X;  1MBU C;  1MWR A;  5GAD a;  3CMA W;  1QVG V;  2QEX W;  1VQK W;  3G6E W;  2ZJR W;  3W7X A;  3GQ0 A;  4WFB W; 
#chains in the Genus database with same CATH homology
 3GQ1 A;  1CTF A;  3G1B A;  3G19 A;  1R6O C;  3O1F B;  2WA9 A;  3O1F A;  1MG9 A;  1RQU A;  4YJM A;  4YJX A;  3GW1 A;  3DNJ A;  3O2O A;  1RQV A;  1RQS A;  1R6Q C;  1MBV B;  1MBU C;  1DD4 A;  4YKA A;  1LZW A;  2W9R A;  3GQ0 A;  3O2B A;  1DD3 A;  3O2H A;  1MBX C;  3G3P A;  2WA8 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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