1MG9A

The structural basis of clps-mediated switch in clpa substrate recognition
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
84
structure length
84
Chain Sequence
KPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVAYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTI'8 (54-57)TIV9 (80-83)TIV8 (79-82)TI'6 (48-51)TI'7 (49-52)TIV5 (46-49)TIV3 (44-47)TI'11 (66-69)S1 (27-33)TI'1 (35-38)TI'2 (39-42)TI'3 (40-43)TIV1 (41-44)TI'4 (42-45)TIV2 (43-46)TI'9 (55-58)TIV6 (65-68)3H2 (63-65)TIV7 (77-80)S2 (70-77)3H1 (59-61)Updating...
connected with : NaN
molecule tags Chaperone
source organism Escherichia coli
publication title Structural analysis of the adaptor protein ClpS in complex with the N-terminal domain of ClpA
pubmed doi rcsb
molecule keywords protein yljA
total genus 25
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2002-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1mg9A00
1RQVA 3O1FB 3O2HA 3DNJA 1R6QC 1LZWA 3O1FA 1DD3A 4YJXA 1MBVB 4YJMA 3GW1A 1RQUA 3G19A 1MBXC 1R6OC 3GQ0A 1MG9A 2W9RA 3GQ1A 3O2BA 2WA9A 1MBUC 4YKAA 1DD4A 3G1BA 1CTFA 1RQSA 2WA8A 3O2OA 3G3PA
chains in the Genus database with same CATH superfamily
1K73X 5JVGW 3CCSW 1YIJW 3O1FA 1K8AX 4YJXA 3CC2W 1KQSV 1RQUA 3G6EW 3CCQW 5M1AA 3GQ1A 3W7UA 3I56W 1VQ7W 1KC8X 3D3IA 3ZG0A 3G4SW 5HL7W 5GAEa 3PIOW 5CA3A 3CCUW 1VQKW 3CPWV 3I55W 4DKIA 4WFAW 3O2HA 3DNJA 1JJ2V 1YJ9W 1YJWW 1LZWA 1N8RX 5M18A 1MWSA 3CCJW 1MWTA 3GW1A 3G19A 1VQLW 1VQNW 3CD6W 3CMAW 1VQPW 5GADa 1NJIX 3O2BA 1MWRA 2WA9A 3W7WA 1DD4A 4CPKA 2WA8A 1YHQW 3ZFZA 1VQQA 2OTLW 2ZJQW 1VQ4W 1VQMW 3CC4W 3CCVW 3DLLW 5GW7A 3O1FB 1R6QC 3CCEW 3CMEW 1VQ6W 1MBVB 4YJMA 3CXCV 1Q7YX 1MWUA 1MBXC 1R6OC 1Q81X 1K9MX 4CJNA 1MG9A 4BL3A 1VQ8W 1VQ5W 4IOAW 1YITW 3CCRW 3OW2V 3W7TA 4IOCW 3G1BA 2OTJW 4IO9W 4BL2A 4UY8Z 4WFBW 4WCEW 3O2OA 1W2BV 1Q82X 2ZJPW 5M19A 1RQVA 5GAGa 4WF9W 3CC7W 2QEXW 1DD3A 1BXYA 3PIPW 1Q86X 1QVGV 1YI2W 3CCMW 3CCLW 2ZJRW 1M1KX 3G71W 1VQOW 1M90X 3GQ0A 2W9RA 1KD1X 5DM6W 3ZG5A 3W7XA 5GAHa 3CF5W 4WFNW 1VQ9W 1MBUC 3W7SA 4YKAA 2QA4W 1CTFA 1RQSA 1S72W 3J7ZZ 4U67W 5JVHW 1YJNW 5DM7W 3G3PA 1QVFV
chains in the Genus database with same CATH topology
1RQVA 3O1FB 3O2HA 3DNJA 1R6QC 1LZWA 3O1FA 1DD3A 4YJXA 1MBVB 4YJMA 3GW1A 1RQUA 3G19A 1MBXC 1R6OC 3GQ0A 1MG9A 2W9RA 3GQ1A 3O2BA 2WA9A 1MBUC 4YKAA 1DD4A 3G1BA 1CTFA 1RQSA 2WA8A 3O2OA 3G3PA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1RQV A;  3O1F B;  3O2H A;  3DNJ A;  1R6Q C;  1LZW A;  3O1F A;  1DD3 A;  4YJX A;  1MBV B;  4YJM A;  3GW1 A;  1RQU A;  3G19 A;  1MBX C;  1R6O C;  3GQ0 A;  1MG9 A;  2W9R A;  3GQ1 A;  3O2B A;  2WA9 A;  1MBU C;  4YKA A;  1DD4 A;  3G1B A;  1CTF A;  1RQS A;  2WA8 A;  3O2O A;  3G3P A; 
#chains in the Genus database with same CATH topology
 1K73 X;  5JVG W;  3CCS W;  1YIJ W;  3O1F A;  1K8A X;  4YJX A;  3CC2 W;  1KQS V;  1RQU A;  3G6E W;  3CCQ W;  5M1A A;  3GQ1 A;  3W7U A;  3I56 W;  1VQ7 W;  1KC8 X;  3D3I A;  3ZG0 A;  3G4S W;  5HL7 W;  5GAE a;  3PIO W;  5CA3 A;  3CCU W;  1VQK W;  3CPW V;  3I55 W;  4DKI A;  4WFA W;  3O2H A;  3DNJ A;  1JJ2 V;  1YJ9 W;  1YJW W;  1LZW A;  1N8R X;  5M18 A;  1MWS A;  3CCJ W;  1MWT A;  3GW1 A;  3G19 A;  1VQL W;  1VQN W;  3CD6 W;  3CMA W;  1VQP W;  5GAD a;  1NJI X;  3O2B A;  1MWR A;  2WA9 A;  3W7W A;  1DD4 A;  4CPK A;  2WA8 A;  1YHQ W;  3ZFZ A;  1VQQ A;  2OTL W;  2ZJQ W;  1VQ4 W;  1VQM W;  3CC4 W;  3CCV W;  3DLL W;  5GW7 A;  3O1F B;  1R6Q C;  3CCE W;  3CME W;  1VQ6 W;  1MBV B;  4YJM A;  3CXC V;  1Q7Y X;  1MWU A;  1MBX C;  1R6O C;  1Q81 X;  1K9M X;  4CJN A;  1MG9 A;  4BL3 A;  1VQ8 W;  1VQ5 W;  4IOA W;  1YIT W;  3CCR W;  3OW2 V;  3W7T A;  4IOC W;  3G1B A;  2OTJ W;  4IO9 W;  4BL2 A;  4UY8 Z;  4WFB W;  4WCE W;  3O2O A;  1W2B V;  1Q82 X;  2ZJP W;  5M19 A;  1RQV A;  5GAG a;  4WF9 W;  3CC7 W;  2QEX W;  1DD3 A;  1BXY A;  3PIP W;  1Q86 X;  1QVG V;  1YI2 W;  3CCM W;  3CCL W;  2ZJR W;  1M1K X;  3G71 W;  1VQO W;  1M90 X;  3GQ0 A;  2W9R A;  1KD1 X;  5DM6 W;  3ZG5 A;  3W7X A;  5GAH a;  3CF5 W;  4WFN W;  1VQ9 W;  1MBU C;  3W7S A;  4YKA A;  2QA4 W;  1CTF A;  1RQS A;  1S72 W;  3J7Z Z;  4U67 W;  5JVH W;  1YJN W;  5DM7 W;  3G3P A;  1QVF V; 
#chains in the Genus database with same CATH homology
 1RQV A;  3O1F B;  3O2H A;  3DNJ A;  1R6Q C;  1LZW A;  3O1F A;  1DD3 A;  4YJX A;  1MBV B;  4YJM A;  3GW1 A;  1RQU A;  3G19 A;  1MBX C;  1R6O C;  3GQ0 A;  1MG9 A;  2W9R A;  3GQ1 A;  3O2B A;  2WA9 A;  1MBU C;  4YKA A;  1DD4 A;  3G1B A;  1CTF A;  1RQS A;  2WA8 A;  3O2O A;  3G3P A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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