1R6QC

Clpns with fragments
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
100
structure length
94
Chain Sequence
WLDFDQLDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic investigation of peptide binding sites in the N-domain of the ClpA chaperone.
pubmed doi rcsb
molecule tags Chaperone/protein binding
source organism Escherichia coli
molecule keywords ATP-dependent Clp protease ATP-binding subunit clpA
total genus 25
structure length 94
sequence length 100
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1r6qC00
1MG9A 1RQUA 3GQ1A 4YKAA 4YJMA 3G1BA 3O2HA 1RQSA 1MBXC 1MBVB 1RQVA 3O1FB 1R6OC 3O1FA 1DD3A 1MBUC 3DNJA 2WA9A 3G3PA 3O2OA 3G19A 3O2BA 1LZWA 1R6QC 2WA8A 1CTFA 1DD4A 3GQ0A 3GW1A 4YJXA 2W9RA
chains in the Genus database with same CATH superfamily
5GAEa 5M1AA 4BL2A 3W7UA 4WFBW 1VQNW 4YKAA 2OTLW 1KD1X 2ZJPW 1QVGV 3D3IA 5JVGW 2QEXW 4WFNW 3CCRW 1YITW 1MBXC 1VQLW 3PIPW 1MWUA 1MWTA 3O1FB 1VQMW 3O1FA 3CMEW 1DD3A 3OW2V 1YJ9W 1Q86X 5DM7W 2WA9A 1KC8X 3O2OA 3G71W 1K9MX 4IOCW 1QVFV 1MWRA 1R6QC 3GW1A 1DD4A 3W7SA 3CXCV 1VQ4W 1VQ5W 3CC4W 1VQ9W 5GW7A 3G4SW 5CA3A 2QA4W 3CMAW 1YJWW 1YJNW 4DKIA 3O2HA 1RQSA 3G6EW 3DLLW 1RQVA 3CCSW 1M1KX 4WF9W 1K73X 1Q7YX 1R6OC 3CCJW 1YI2W 3G3PA 3ZG0A 1N8RX 1KQSV 5M18A 1Q82X 1VQ8W 3O2BA 5JVHW 1YHQW 4WFAW 1W2BV 5GAHa 4YJXA 3ZG5A 2W9RA 2ZJQW 4IO9W 1MG9A 1VQ7W 3W7WA 1RQUA 3CPWV 3GQ1A 1VQQA 3CCLW 3CCQW 3CC2W 1NJIX 4IOAW 2ZJRW 1K8AX 3W7XA 4BL3A 3PIOW 1S72W 4UY8Z 1VQKW 1MBUC 3CD6W 4U67W 1VQ6W 5DM6W 3CCEW 5HL7W 1VQOW 3G19A 2WA8A 3J7ZZ 3GQ0A 4CPKA 3CC7W 2OTJW 1M90X 5GADa 1MWSA 4CJNA 3I56W 4YJMA 3G1BA 5GAGa 3CCMW 1BXYA 1MBVB 3CF5W 3CCVW 1JJ2V 3W7TA 3I55W 1VQPW 3DNJA 4WCEW 3ZFZA 1Q81X 5M19A 3CCUW 1LZWA 1CTFA 1YIJW
chains in the Genus database with same CATH topology
1MG9A 1RQUA 3GQ1A 4YKAA 4YJMA 3G1BA 3O2HA 1RQSA 1MBXC 1MBVB 1RQVA 3O1FB 1R6OC 3O1FA 1DD3A 1MBUC 3DNJA 2WA9A 3G3PA 3O2OA 3G19A 3O2BA 1LZWA 1R6QC 2WA8A 1CTFA 1DD4A 3GQ0A 3GW1A 4YJXA 2W9RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MG9 A;  1RQU A;  3GQ1 A;  4YKA A;  4YJM A;  3G1B A;  3O2H A;  1RQS A;  1MBX C;  1MBV B;  1RQV A;  3O1F B;  1R6O C;  3O1F A;  1DD3 A;  1MBU C;  3DNJ A;  2WA9 A;  3G3P A;  3O2O A;  3G19 A;  3O2B A;  1LZW A;  1R6Q C;  2WA8 A;  1CTF A;  1DD4 A;  3GQ0 A;  3GW1 A;  4YJX A;  2W9R A; 
#chains in the Genus database with same CATH topology
 5GAE a;  5M1A A;  4BL2 A;  3W7U A;  4WFB W;  1VQN W;  4YKA A;  2OTL W;  1KD1 X;  2ZJP W;  1QVG V;  3D3I A;  5JVG W;  2QEX W;  4WFN W;  3CCR W;  1YIT W;  1MBX C;  1VQL W;  3PIP W;  1MWU A;  1MWT A;  3O1F B;  1VQM W;  3O1F A;  3CME W;  1DD3 A;  3OW2 V;  1YJ9 W;  1Q86 X;  5DM7 W;  2WA9 A;  1KC8 X;  3O2O A;  3G71 W;  1K9M X;  4IOC W;  1QVF V;  1MWR A;  1R6Q C;  3GW1 A;  1DD4 A;  3W7S A;  3CXC V;  1VQ4 W;  1VQ5 W;  3CC4 W;  1VQ9 W;  5GW7 A;  3G4S W;  5CA3 A;  2QA4 W;  3CMA W;  1YJW W;  1YJN W;  4DKI A;  3O2H A;  1RQS A;  3G6E W;  3DLL W;  1RQV A;  3CCS W;  1M1K X;  4WF9 W;  1K73 X;  1Q7Y X;  1R6O C;  3CCJ W;  1YI2 W;  3G3P A;  3ZG0 A;  1N8R X;  1KQS V;  5M18 A;  1Q82 X;  1VQ8 W;  3O2B A;  5JVH W;  1YHQ W;  4WFA W;  1W2B V;  5GAH a;  4YJX A;  3ZG5 A;  2W9R A;  2ZJQ W;  4IO9 W;  1MG9 A;  1VQ7 W;  3W7W A;  1RQU A;  3CPW V;  3GQ1 A;  1VQQ A;  3CCL W;  3CCQ W;  3CC2 W;  1NJI X;  4IOA W;  2ZJR W;  1K8A X;  3W7X A;  4BL3 A;  3PIO W;  1S72 W;  4UY8 Z;  1VQK W;  1MBU C;  3CD6 W;  4U67 W;  1VQ6 W;  5DM6 W;  3CCE W;  5HL7 W;  1VQO W;  3G19 A;  2WA8 A;  3J7Z Z;  3GQ0 A;  4CPK A;  3CC7 W;  2OTJ W;  1M90 X;  5GAD a;  1MWS A;  4CJN A;  3I56 W;  4YJM A;  3G1B A;  5GAG a;  3CCM W;  1BXY A;  1MBV B;  3CF5 W;  3CCV W;  1JJ2 V;  3W7T A;  3I55 W;  1VQP W;  3DNJ A;  4WCE W;  3ZFZ A;  1Q81 X;  5M19 A;  3CCU W;  1LZW A;  1CTF A;  1YIJ W; 
#chains in the Genus database with same CATH homology
 1MG9 A;  1RQU A;  3GQ1 A;  4YKA A;  4YJM A;  3G1B A;  3O2H A;  1RQS A;  1MBX C;  1MBV B;  1RQV A;  3O1F B;  1R6O C;  3O1F A;  1DD3 A;  1MBU C;  3DNJ A;  2WA9 A;  3G3P A;  3O2O A;  3G19 A;  3O2B A;  1LZW A;  1R6Q C;  2WA8 A;  1CTF A;  1DD4 A;  3GQ0 A;  3GW1 A;  4YJX A;  2W9R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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