1R6QC

Clpns with fragments
Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
100
structure length
94
Chain Sequence
WLDFDQLDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS1 (27-33)AH3 (78-95)TI2 (35-38)S2 (70-77)AH2 (55-68)AH1 (40-51)Updating...
connected with : NaN
molecule tags Chaperone/protein binding
source organism Escherichia coli
publication title Crystallographic investigation of peptide binding sites in the N-domain of the ClpA chaperone.
pubmed doi rcsb
molecule keywords ATP-dependent Clp protease ATP-binding subunit clpA
total genus 25
structure length 94
sequence length 100
chains with identical sequence D
ec nomenclature
pdb deposition date 2003-10-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 1r6qC00
1RQVA 4YKAA 3G3PA 3O2OA 1MBXC 1DD4A 4YJMA 1R6OC 2WA9A 3GQ0A 3DNJA 1LZWA 3GQ1A 2W9RA 4YJXA 3O2HA 3O1FB 1RQUA 3O1FA 1CTFA 3G1BA 1DD3A 1R6QC 3O2BA 3GW1A 1MBUC 1RQSA 2WA8A 1MBVB 3G19A 1MG9A
chains in the Genus database with same CATH superfamily
3I55W 4WFNW 5GAEa 3O2OA 4YJMA 5GW7A 3CC4W 3G4SW 2QA4W 5JVGW 3PIOW 4WFBW 3W7WA 3O2HA 3CCRW 3O1FB 1RQUA 3O1FA 3D3IA 3W7TA 1MWRA 4CPKA 5DM6W 2QEXW 1MWTA 1VQ4W 1VQ7W 3CC7W 4BL2A 3CD6W 3ZG5A 3I56W 1RQVA 3PIPW 5GADa 5M19A 3CF5W 1DD4A 1YJWW 1VQLW 5CA3A 3CCJW 3CCQW 3GQ0A 1M90X 3DNJA 1M1KX 3CXCV 3J7ZZ 3W7UA 1LZWA 2W9RA 3CMAW 2OTLW 1K9MX 1W2BV 3CCEW 1VQPW 1VQMW 1KQSV 1QVFV 5GAHa 1DD3A 2ZJPW 5DM7W 3CPWV 3GW1A 1Q86X 4WF9W 3OW2V 1QVGV 1VQQA 4IOCW 1YIJW 1MBVB 5M1AA 1K73X 5M18A 4YKAA 3G3PA 1JJ2V 1R6OC 2WA9A 1YJ9W 4IO9W 4WCEW 4YJXA 3W7XA 4CJNA 3CCLW 1Q81X 3CCMW 1MWUA 1N8RX 1VQ6W 3ZG0A 3CCVW 1MWSA 3O2BA 1VQOW 4IOAW 1RQSA 3DLLW 3G19A 5JVHW 3CCUW 1VQ9W 1NJIX 3CCSW 1YITW 1Q82X 2OTJW 4BL3A 2ZJRW 1MBXC 1K8AX 1YHQW 3ZFZA 4DKIA 1Q7YX 3W7SA 1YJNW 3GQ1A 4WFAW 1S72W 2ZJQW 4U67W 3CMEW 1VQKW 1KD1X 4UY8Z 5HL7W 1BXYA 3CC2W 3G6EW 1CTFA 3G1BA 1R6QC 1YI2W 1KC8X 1VQNW 1MBUC 2WA8A 1VQ8W 1VQ5W 5GAGa 3G71W 1MG9A
chains in the Genus database with same CATH topology
1RQVA 4YKAA 3G3PA 3O2OA 1MBXC 1DD4A 4YJMA 1R6OC 2WA9A 3GQ0A 3DNJA 1LZWA 3GQ1A 2W9RA 4YJXA 3O2HA 3O1FB 1RQUA 3O1FA 1CTFA 3G1BA 1DD3A 1R6QC 3O2BA 3GW1A 1MBUC 1RQSA 2WA8A 1MBVB 3G19A 1MG9A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1RQV A;  4YKA A;  3G3P A;  3O2O A;  1MBX C;  1DD4 A;  4YJM A;  1R6O C;  2WA9 A;  3GQ0 A;  3DNJ A;  1LZW A;  3GQ1 A;  2W9R A;  4YJX A;  3O2H A;  3O1F B;  1RQU A;  3O1F A;  1CTF A;  3G1B A;  1DD3 A;  1R6Q C;  3O2B A;  3GW1 A;  1MBU C;  1RQS A;  2WA8 A;  1MBV B;  3G19 A;  1MG9 A; 
#chains in the Genus database with same CATH topology
 3I55 W;  4WFN W;  5GAE a;  3O2O A;  4YJM A;  5GW7 A;  3CC4 W;  3G4S W;  2QA4 W;  5JVG W;  3PIO W;  4WFB W;  3W7W A;  3O2H A;  3CCR W;  3O1F B;  1RQU A;  3O1F A;  3D3I A;  3W7T A;  1MWR A;  4CPK A;  5DM6 W;  2QEX W;  1MWT A;  1VQ4 W;  1VQ7 W;  3CC7 W;  4BL2 A;  3CD6 W;  3ZG5 A;  3I56 W;  1RQV A;  3PIP W;  5GAD a;  5M19 A;  3CF5 W;  1DD4 A;  1YJW W;  1VQL W;  5CA3 A;  3CCJ W;  3CCQ W;  3GQ0 A;  1M90 X;  3DNJ A;  1M1K X;  3CXC V;  3J7Z Z;  3W7U A;  1LZW A;  2W9R A;  3CMA W;  2OTL W;  1K9M X;  1W2B V;  3CCE W;  1VQP W;  1VQM W;  1KQS V;  1QVF V;  5GAH a;  1DD3 A;  2ZJP W;  5DM7 W;  3CPW V;  3GW1 A;  1Q86 X;  4WF9 W;  3OW2 V;  1QVG V;  1VQQ A;  4IOC W;  1YIJ W;  1MBV B;  5M1A A;  1K73 X;  5M18 A;  4YKA A;  3G3P A;  1JJ2 V;  1R6O C;  2WA9 A;  1YJ9 W;  4IO9 W;  4WCE W;  4YJX A;  3W7X A;  4CJN A;  3CCL W;  1Q81 X;  3CCM W;  1MWU A;  1N8R X;  1VQ6 W;  3ZG0 A;  3CCV W;  1MWS A;  3O2B A;  1VQO W;  4IOA W;  1RQS A;  3DLL W;  3G19 A;  5JVH W;  3CCU W;  1VQ9 W;  1NJI X;  3CCS W;  1YIT W;  1Q82 X;  2OTJ W;  4BL3 A;  2ZJR W;  1MBX C;  1K8A X;  1YHQ W;  3ZFZ A;  4DKI A;  1Q7Y X;  3W7S A;  1YJN W;  3GQ1 A;  4WFA W;  1S72 W;  2ZJQ W;  4U67 W;  3CME W;  1VQK W;  1KD1 X;  4UY8 Z;  5HL7 W;  1BXY A;  3CC2 W;  3G6E W;  1CTF A;  3G1B A;  1R6Q C;  1YI2 W;  1KC8 X;  1VQN W;  1MBU C;  2WA8 A;  1VQ8 W;  1VQ5 W;  5GAG a;  3G71 W;  1MG9 A; 
#chains in the Genus database with same CATH homology
 1RQV A;  4YKA A;  3G3P A;  3O2O A;  1MBX C;  1DD4 A;  4YJM A;  1R6O C;  2WA9 A;  3GQ0 A;  3DNJ A;  1LZW A;  3GQ1 A;  2W9R A;  4YJX A;  3O2H A;  3O1F B;  1RQU A;  3O1F A;  1CTF A;  3G1B A;  1DD3 A;  1R6Q C;  3O2B A;  3GW1 A;  1MBU C;  1RQS A;  2WA8 A;  1MBV B;  3G19 A;  1MG9 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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