2AKJA

Structure of spinach nitrite reductase
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
535
structure length
535
Chain Sequence
RLEPRVEERDGFWVLKEEFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPEPPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords Ferredoxin--nitrite reductase, chloroplast
publication title Structure of Spinach Nitrite Reductase: Implications for Multi-electron Reactions by the Iron-Sulfur:Siroheme Cofactor
pubmed doi rcsb
source organism Spinacia oleracea
total genus 175
structure length 535
sequence length 535
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2005-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 2akjA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 2akjA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 2akjA01
4S3BA 3VKSA 4G9PA 3MM7B 3VM0A 3VKPA 4G39A 3VM1A 3B0LA 2GEPA 3B0HA 3NOYA 4S3CA 3MMBB 4S3AA 2XSJA 3MMAB 3B0JA 4S23A 3MMCA 3VLZA 3MM9A 3OR2B 3VLXA 6GEPA 1ZJ8A 3AOPA 3GEOA 3B0GA 3MM6B 3OR1A 5GEPA 4S39A 3VLYA 2V4JB 4HTRA 4S3DA 3MM8A 2AKJA 3MM7A 3MM5B 3VKTA 3B0NA 4G38A 1AOPA 3VKQA 3MMBA 3MMAA 4S3EA 1ZJ9A 2Y0FA 3VKRA 4AOPA 2XSJB 3MM9B 3OR2A 7GEPA 3MMCB 3MM6A 4S3FA 2V4JA 3B0MA 4S38A 3OR1B 4GEPA 5AOPA 2AOPA 8GEPA 3MM5A 3MM8B
chains in the Genus database with same CATH superfamily
4S3BA 3VKSA 4G9PA 3MM7B 3VM0A 3VKPA 4G39A 3VM1A 3B0LA 2GEPA 3B0HA 3NOYA 4S3CA 3MMBB 4S3AA 2XSJA 3MMAB 3B0JA 4S23A 3MMCA 3VLZA 3MM9A 3OR2B 3VLXA 6GEPA 1ZJ8A 3AOPA 3GEOA 3B0GA 3MM6B 3OR1A 5GEPA 4S39A 3VLYA 2V4JB 4HTRA 4S3DA 3MM8A 2AKJA 3MM7A 3MM5B 3VKTA 3B0NA 4G38A 1AOPA 3VKQA 3MMBA 3MMAA 4S3EA 1ZJ9A 2Y0FA 3VKRA 4AOPA 2XSJB 3MM9B 3OR2A 7GEPA 3MMCB 3MM6A 4S3FA 2V4JA 3B0MA 4S38A 3OR1B 4GEPA 5AOPA 2AOPA 8GEPA 3MM5A 3MM8B
chains in the Genus database with same CATH topology
4S3BA 3VKSA 4G9PA 3MM7B 3VM0A 3VKPA 4G39A 3VM1A 3B0LA 2GEPA 3B0HA 3NOYA 4S3CA 3MMBB 4S3AA 2XSJA 3MMAB 3B0JA 4S23A 3MMCA 3VLZA 3MM9A 3OR2B 3VLXA 6GEPA 1ZJ8A 3AOPA 3GEOA 3B0GA 3MM6B 3OR1A 5GEPA 4S39A 3VLYA 2V4JB 4HTRA 4S3DA 3MM8A 2AKJA 3MM7A 3MM5B 3VKTA 3B0NA 4G38A 1AOPA 3VKQA 3MMBA 3MMAA 4S3EA 1ZJ9A 2Y0FA 3VKRA 4AOPA 2XSJB 3MM9B 3OR2A 7GEPA 3MMCB 3MM6A 4S3FA 2V4JA 3B0MA 4S38A 3OR1B 4GEPA 5AOPA 2AOPA 8GEPA 3MM5A 3MM8B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S3B A;  3VKS A;  4G9P A;  3MM7 B;  3VM0 A;  3VKP A;  4G39 A;  3VM1 A;  3B0L A;  2GEP A;  3B0H A;  3NOY A;  4S3C A;  3MMB B;  4S3A A;  2XSJ A;  3MMA B;  3B0J A;  4S23 A;  3MMC A;  3VLZ A;  3MM9 A;  3OR2 B;  3VLX A;  6GEP A;  1ZJ8 A;  3AOP A;  3GEO A;  3B0G A;  3MM6 B;  3OR1 A;  5GEP A;  4S39 A;  3VLY A;  2V4J B;  4HTR A;  4S3D A;  3MM8 A;  2AKJ A;  3MM7 A;  3MM5 B;  3VKT A;  3B0N A;  4G38 A;  1AOP A;  3VKQ A;  3MMB A;  3MMA A;  4S3E A;  1ZJ9 A;  2Y0F A;  3VKR A;  4AOP A;  2XSJ B;  3MM9 B;  3OR2 A;  7GEP A;  3MMC B;  3MM6 A;  4S3F A;  2V4J A;  3B0M A;  4S38 A;  3OR1 B;  4GEP A;  5AOP A;  2AOP A;  8GEP A;  3MM5 A;  3MM8 B; 
#chains in the Genus database with same CATH topology
 4S3B A;  3VKS A;  4G9P A;  3MM7 B;  3VM0 A;  3VKP A;  4G39 A;  3VM1 A;  3B0L A;  2GEP A;  3B0H A;  3NOY A;  4S3C A;  3MMB B;  4S3A A;  2XSJ A;  3MMA B;  3B0J A;  4S23 A;  3MMC A;  3VLZ A;  3MM9 A;  3OR2 B;  3VLX A;  6GEP A;  1ZJ8 A;  3AOP A;  3GEO A;  3B0G A;  3MM6 B;  3OR1 A;  5GEP A;  4S39 A;  3VLY A;  2V4J B;  4HTR A;  4S3D A;  3MM8 A;  2AKJ A;  3MM7 A;  3MM5 B;  3VKT A;  3B0N A;  4G38 A;  1AOP A;  3VKQ A;  3MMB A;  3MMA A;  4S3E A;  1ZJ9 A;  2Y0F A;  3VKR A;  4AOP A;  2XSJ B;  3MM9 B;  3OR2 A;  7GEP A;  3MMC B;  3MM6 A;  4S3F A;  2V4J A;  3B0M A;  4S38 A;  3OR1 B;  4GEP A;  5AOP A;  2AOP A;  8GEP A;  3MM5 A;  3MM8 B; 
#chains in the Genus database with same CATH homology
 4S3B A;  3VKS A;  4G9P A;  3MM7 B;  3VM0 A;  3VKP A;  4G39 A;  3VM1 A;  3B0L A;  2GEP A;  3B0H A;  3NOY A;  4S3C A;  3MMB B;  4S3A A;  2XSJ A;  3MMA B;  3B0J A;  4S23 A;  3MMC A;  3VLZ A;  3MM9 A;  3OR2 B;  3VLX A;  6GEP A;  1ZJ8 A;  3AOP A;  3GEO A;  3B0G A;  3MM6 B;  3OR1 A;  5GEP A;  4S39 A;  3VLY A;  2V4J B;  4HTR A;  4S3D A;  3MM8 A;  2AKJ A;  3MM7 A;  3MM5 B;  3VKT A;  3B0N A;  4G38 A;  1AOP A;  3VKQ A;  3MMB A;  3MMA A;  4S3E A;  1ZJ9 A;  2Y0F A;  3VKR A;  4AOP A;  2XSJ B;  3MM9 B;  3OR2 A;  7GEP A;  3MMC B;  3MM6 A;  4S3F A;  2V4J A;  3B0M A;  4S38 A;  3OR1 B;  4GEP A;  5AOP A;  2AOP A;  8GEP A;  3MM5 A;  3MM8 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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