2AKJA

Structure of spinach nitrite reductase
Total Genus 175
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
175
sequence length
535
structure length
535
Chain Sequence
RLEPRVEERDGFWVLKEEFRSGINPAEKVKIEKDPMKLFIEDGISDLATLSMEEVDKSKHNKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSEQTRYLASVIKKYGKDGCADVTTRQNWQIRGVVLPDVPEIIKGLESVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDLYEHPHINDLAYMPATKNGKFGFNLLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGFRGNRQKCRMMWLIDELGMEAFRGEVEKRMPEQVLERASSEELVQKDWERREYLGVHPQKQQGLSFVGLHIPVGRLQADEMEELARIADVYGSGELRLTVEQNIIIPNVENSKIDSLLNEPLLKERYSPEPPILMKGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRPVRMHWTGCPNSCGQVQVADIGFMGCMTRDENGKPCEGADVFVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILINQFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of Spinach Nitrite Reductase: Implications for Multi-electron Reactions by the Iron-Sulfur:Siroheme Cofactor
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Spinacia oleracea
molecule keywords Ferredoxin--nitrite reductase, chloroplast
total genus 175
structure length 535
sequence length 535
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2005-08-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 2akjA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 2akjA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 2akjA01
3OR2A 4HTRA 3VKTA 1AOPA 3B0JA 1ZJ8A 3MM8B 2GEPA 3MM7A 4G39A 8GEPA 3B0MA 3MM5B 2AKJA 3MMAB 5AOPA 4S3EA 7GEPA 3B0GA 4S3BA 3VLYA 3MM8A 3VKPA 4S3AA 3MM5A 3VLXA 2XSJB 4S3DA 2AOPA 3MMAA 3AOPA 2Y0FA 3MM6B 4G9PA 5GEPA 3MM9B 2V4JB 3OR1B 2XSJA 4S38A 3MMCB 4S3CA 3VKSA 3MM6A 4S39A 3VKRA 4GEPA 3NOYA 6GEPA 3GEOA 3VKQA 3MMBB 3MM9A 2V4JA 3OR1A 4G38A 3VLZA 3VM1A 3MMCA 3B0NA 3OR2B 3B0LA 3VM0A 4S23A 1ZJ9A 4AOPA 4S3FA 3MM7B 3MMBA 3B0HA
chains in the Genus database with same CATH superfamily
3OR2A 4HTRA 3VKTA 1AOPA 3B0JA 1ZJ8A 3MM8B 2GEPA 3MM7A 4G39A 8GEPA 3B0MA 3MM5B 2AKJA 3MMAB 5AOPA 4S3EA 7GEPA 3B0GA 4S3BA 3VLYA 3MM8A 3VKPA 4S3AA 3MM5A 3VLXA 2XSJB 4S3DA 2AOPA 3MMAA 3AOPA 2Y0FA 3MM6B 4G9PA 5GEPA 3MM9B 2V4JB 3OR1B 2XSJA 4S38A 3MMCB 4S3CA 3VKSA 3MM6A 4S39A 3VKRA 4GEPA 3NOYA 6GEPA 3GEOA 3VKQA 3MMBB 3MM9A 2V4JA 3OR1A 4G38A 3VLZA 3VM1A 3MMCA 3B0NA 3OR2B 3B0LA 3VM0A 4S23A 1ZJ9A 4AOPA 4S3FA 3MM7B 3MMBA 3B0HA
chains in the Genus database with same CATH topology
3OR2A 4HTRA 3VKTA 1AOPA 3B0JA 1ZJ8A 3MM8B 2GEPA 3MM7A 4G39A 8GEPA 3B0MA 3MM5B 2AKJA 3MMAB 5AOPA 4S3EA 7GEPA 3B0GA 4S3BA 3VLYA 3MM8A 3VKPA 4S3AA 3MM5A 3VLXA 2XSJB 4S3DA 2AOPA 3MMAA 3AOPA 2Y0FA 3MM6B 4G9PA 5GEPA 3MM9B 2V4JB 3OR1B 2XSJA 4S38A 3MMCB 4S3CA 3VKSA 3MM6A 4S39A 3VKRA 4GEPA 3NOYA 6GEPA 3GEOA 3VKQA 3MMBB 3MM9A 2V4JA 3OR1A 4G38A 3VLZA 3VM1A 3MMCA 3B0NA 3OR2B 3B0LA 3VM0A 4S23A 1ZJ9A 4AOPA 4S3FA 3MM7B 3MMBA 3B0HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OR2 A;  4HTR A;  3VKT A;  1AOP A;  3B0J A;  1ZJ8 A;  3MM8 B;  2GEP A;  3MM7 A;  4G39 A;  8GEP A;  3B0M A;  3MM5 B;  2AKJ A;  3MMA B;  5AOP A;  4S3E A;  7GEP A;  3B0G A;  4S3B A;  3VLY A;  3MM8 A;  3VKP A;  4S3A A;  3MM5 A;  3VLX A;  2XSJ B;  4S3D A;  2AOP A;  3MMA A;  3AOP A;  2Y0F A;  3MM6 B;  4G9P A;  5GEP A;  3MM9 B;  2V4J B;  3OR1 B;  2XSJ A;  4S38 A;  3MMC B;  4S3C A;  3VKS A;  3MM6 A;  4S39 A;  3VKR A;  4GEP A;  3NOY A;  6GEP A;  3GEO A;  3VKQ A;  3MMB B;  3MM9 A;  2V4J A;  3OR1 A;  4G38 A;  3VLZ A;  3VM1 A;  3MMC A;  3B0N A;  3OR2 B;  3B0L A;  3VM0 A;  4S23 A;  1ZJ9 A;  4AOP A;  4S3F A;  3MM7 B;  3MMB A;  3B0H A; 
#chains in the Genus database with same CATH topology
 3OR2 A;  4HTR A;  3VKT A;  1AOP A;  3B0J A;  1ZJ8 A;  3MM8 B;  2GEP A;  3MM7 A;  4G39 A;  8GEP A;  3B0M A;  3MM5 B;  2AKJ A;  3MMA B;  5AOP A;  4S3E A;  7GEP A;  3B0G A;  4S3B A;  3VLY A;  3MM8 A;  3VKP A;  4S3A A;  3MM5 A;  3VLX A;  2XSJ B;  4S3D A;  2AOP A;  3MMA A;  3AOP A;  2Y0F A;  3MM6 B;  4G9P A;  5GEP A;  3MM9 B;  2V4J B;  3OR1 B;  2XSJ A;  4S38 A;  3MMC B;  4S3C A;  3VKS A;  3MM6 A;  4S39 A;  3VKR A;  4GEP A;  3NOY A;  6GEP A;  3GEO A;  3VKQ A;  3MMB B;  3MM9 A;  2V4J A;  3OR1 A;  4G38 A;  3VLZ A;  3VM1 A;  3MMC A;  3B0N A;  3OR2 B;  3B0L A;  3VM0 A;  4S23 A;  1ZJ9 A;  4AOP A;  4S3F A;  3MM7 B;  3MMB A;  3B0H A; 
#chains in the Genus database with same CATH homology
 3OR2 A;  4HTR A;  3VKT A;  1AOP A;  3B0J A;  1ZJ8 A;  3MM8 B;  2GEP A;  3MM7 A;  4G39 A;  8GEP A;  3B0M A;  3MM5 B;  2AKJ A;  3MMA B;  5AOP A;  4S3E A;  7GEP A;  3B0G A;  4S3B A;  3VLY A;  3MM8 A;  3VKP A;  4S3A A;  3MM5 A;  3VLX A;  2XSJ B;  4S3D A;  2AOP A;  3MMA A;  3AOP A;  2Y0F A;  3MM6 B;  4G9P A;  5GEP A;  3MM9 B;  2V4J B;  3OR1 B;  2XSJ A;  4S38 A;  3MMC B;  4S3C A;  3VKS A;  3MM6 A;  4S39 A;  3VKR A;  4GEP A;  3NOY A;  6GEP A;  3GEO A;  3VKQ A;  3MMB B;  3MM9 A;  2V4J A;  3OR1 A;  4G38 A;  3VLZ A;  3VM1 A;  3MMC A;  3B0N A;  3OR2 B;  3B0L A;  3VM0 A;  4S23 A;  1ZJ9 A;  4AOP A;  4S3F A;  3MM7 B;  3MMB A;  3B0H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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