3B0JA

M175e mutant of assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 191
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGEDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 191
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0jA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0jA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0jA01
3MM7A 4S38A 3VLYA 3NOYA 3MMBB 2XSJB 2GEPA 2Y0FA 3MMBA 3B0LA 8GEPA 3VLZA 4S23A 3VKSA 3MMCA 2AOPA 3AOPA 3MMCB 3VKPA 4HTRA 5AOPA 3B0JA 4S3CA 3B0NA 3B0HA 3MM9A 3MM9B 4S3EA 3VM0A 4S39A 3VKTA 1ZJ9A 2AKJA 3MM5B 3MM5A 4S3AA 1ZJ8A 3MM6B 3GEOA 3MMAB 3MMAA 3MM6A 4G38A 6GEPA 3B0MA 2V4JB 2V4JA 4S3DA 4S3FA 4G9PA 5GEPA 4GEPA 3MM7B 3VKQA 4AOPA 4S3BA 3B0GA 3VM1A 3VKRA 3MM8A 3OR1B 3OR1A 1AOPA 3OR2B 3MM8B 3OR2A 7GEPA 4G39A 3VLXA 2XSJA
chains in the Genus database with same CATH superfamily
3MM7A 4S38A 3VLYA 3NOYA 3MMBB 2XSJB 2GEPA 2Y0FA 3MMBA 3B0LA 8GEPA 3VLZA 4S23A 3VKSA 3MMCA 2AOPA 3AOPA 3MMCB 3VKPA 4HTRA 5AOPA 3B0JA 4S3CA 3B0NA 3B0HA 3MM9A 3MM9B 4S3EA 3VM0A 4S39A 3VKTA 1ZJ9A 2AKJA 3MM5B 3MM5A 4S3AA 1ZJ8A 3MM6B 3GEOA 3MMAB 3MMAA 3MM6A 4G38A 6GEPA 3B0MA 2V4JB 2V4JA 4S3DA 4S3FA 4G9PA 5GEPA 4GEPA 3MM7B 3VKQA 4AOPA 4S3BA 3B0GA 3VM1A 3VKRA 3MM8A 3OR1B 3OR1A 1AOPA 3OR2B 3MM8B 3OR2A 7GEPA 4G39A 3VLXA 2XSJA
chains in the Genus database with same CATH topology
3MM7A 4S38A 3VLYA 3NOYA 3MMBB 2XSJB 2GEPA 2Y0FA 3MMBA 3B0LA 8GEPA 3VLZA 4S23A 3VKSA 3MMCA 2AOPA 3AOPA 3MMCB 3VKPA 4HTRA 5AOPA 3B0JA 4S3CA 3B0NA 3B0HA 3MM9A 3MM9B 4S3EA 3VM0A 4S39A 3VKTA 1ZJ9A 2AKJA 3MM5B 3MM5A 4S3AA 1ZJ8A 3MM6B 3GEOA 3MMAB 3MMAA 3MM6A 4G38A 6GEPA 3B0MA 2V4JB 2V4JA 4S3DA 4S3FA 4G9PA 5GEPA 4GEPA 3MM7B 3VKQA 4AOPA 4S3BA 3B0GA 3VM1A 3VKRA 3MM8A 3OR1B 3OR1A 1AOPA 3OR2B 3MM8B 3OR2A 7GEPA 4G39A 3VLXA 2XSJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MM7 A;  4S38 A;  3VLY A;  3NOY A;  3MMB B;  2XSJ B;  2GEP A;  2Y0F A;  3MMB A;  3B0L A;  8GEP A;  3VLZ A;  4S23 A;  3VKS A;  3MMC A;  2AOP A;  3AOP A;  3MMC B;  3VKP A;  4HTR A;  5AOP A;  3B0J A;  4S3C A;  3B0N A;  3B0H A;  3MM9 A;  3MM9 B;  4S3E A;  3VM0 A;  4S39 A;  3VKT A;  1ZJ9 A;  2AKJ A;  3MM5 B;  3MM5 A;  4S3A A;  1ZJ8 A;  3MM6 B;  3GEO A;  3MMA B;  3MMA A;  3MM6 A;  4G38 A;  6GEP A;  3B0M A;  2V4J B;  2V4J A;  4S3D A;  4S3F A;  4G9P A;  5GEP A;  4GEP A;  3MM7 B;  3VKQ A;  4AOP A;  4S3B A;  3B0G A;  3VM1 A;  3VKR A;  3MM8 A;  3OR1 B;  3OR1 A;  1AOP A;  3OR2 B;  3MM8 B;  3OR2 A;  7GEP A;  4G39 A;  3VLX A;  2XSJ A; 
#chains in the Genus database with same CATH topology
 3MM7 A;  4S38 A;  3VLY A;  3NOY A;  3MMB B;  2XSJ B;  2GEP A;  2Y0F A;  3MMB A;  3B0L A;  8GEP A;  3VLZ A;  4S23 A;  3VKS A;  3MMC A;  2AOP A;  3AOP A;  3MMC B;  3VKP A;  4HTR A;  5AOP A;  3B0J A;  4S3C A;  3B0N A;  3B0H A;  3MM9 A;  3MM9 B;  4S3E A;  3VM0 A;  4S39 A;  3VKT A;  1ZJ9 A;  2AKJ A;  3MM5 B;  3MM5 A;  4S3A A;  1ZJ8 A;  3MM6 B;  3GEO A;  3MMA B;  3MMA A;  3MM6 A;  4G38 A;  6GEP A;  3B0M A;  2V4J B;  2V4J A;  4S3D A;  4S3F A;  4G9P A;  5GEP A;  4GEP A;  3MM7 B;  3VKQ A;  4AOP A;  4S3B A;  3B0G A;  3VM1 A;  3VKR A;  3MM8 A;  3OR1 B;  3OR1 A;  1AOP A;  3OR2 B;  3MM8 B;  3OR2 A;  7GEP A;  4G39 A;  3VLX A;  2XSJ A; 
#chains in the Genus database with same CATH homology
 3MM7 A;  4S38 A;  3VLY A;  3NOY A;  3MMB B;  2XSJ B;  2GEP A;  2Y0F A;  3MMB A;  3B0L A;  8GEP A;  3VLZ A;  4S23 A;  3VKS A;  3MMC A;  2AOP A;  3AOP A;  3MMC B;  3VKP A;  4HTR A;  5AOP A;  3B0J A;  4S3C A;  3B0N A;  3B0H A;  3MM9 A;  3MM9 B;  4S3E A;  3VM0 A;  4S39 A;  3VKT A;  1ZJ9 A;  2AKJ A;  3MM5 B;  3MM5 A;  4S3A A;  1ZJ8 A;  3MM6 B;  3GEO A;  3MMA B;  3MMA A;  3MM6 A;  4G38 A;  6GEP A;  3B0M A;  2V4J B;  2V4J A;  4S3D A;  4S3F A;  4G9P A;  5GEP A;  4GEP A;  3MM7 B;  3VKQ A;  4AOP A;  4S3B A;  3B0G A;  3VM1 A;  3VKR A;  3MM8 A;  3OR1 B;  3OR1 A;  1AOP A;  3OR2 B;  3MM8 B;  3OR2 A;  7GEP A;  4G39 A;  3VLX A;  2XSJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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