3B0JA

M175e mutant of assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 191
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
191
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGEDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
molecule keywords Nitrite reductase
total genus 191
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0jA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0jA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0jA01
2Y0FA 4G38A 3VKPA 3MMBA 3MMBB 3B0HA 4AOPA 4S3DA 3GEOA 3B0JA 2XSJB 2XSJA 3MM8B 3VKRA 4S3BA 3B0MA 4S3EA 3B0NA 1ZJ8A 3MMAA 3MM6B 3MMAB 3MM6A 4S23A 3VLZA 1AOPA 3B0GA 3OR2A 3VKSA 3VM0A 2V4JB 2AOPA 3OR1A 4G39A 4HTRA 8GEPA 4S3AA 7GEPA 3MM5B 4S38A 5AOPA 3MM7B 3MM9B 3MM9A 3OR1B 3MM8A 4S39A 6GEPA 5GEPA 3VLYA 4G9PA 3VKQA 2GEPA 3OR2B 3NOYA 3MMCB 3MMCA 3MM5A 3AOPA 4S3CA 4S3FA 3VKTA 3VLXA 3B0LA 3VM1A 4GEPA 1ZJ9A 2V4JA 2AKJA 3MM7A
chains in the Genus database with same CATH superfamily
2Y0FA 4G38A 3VKPA 3MMBA 3MMBB 3B0HA 4AOPA 4S3DA 3GEOA 3B0JA 2XSJB 2XSJA 3MM8B 3VKRA 4S3BA 3B0MA 4S3EA 3B0NA 1ZJ8A 3MMAA 3MM6B 3MMAB 3MM6A 4S23A 3VLZA 1AOPA 3B0GA 3OR2A 3VKSA 3VM0A 2V4JB 2AOPA 3OR1A 4G39A 4HTRA 8GEPA 4S3AA 7GEPA 3MM5B 4S38A 5AOPA 3MM7B 3MM9B 3MM9A 3OR1B 3MM8A 4S39A 6GEPA 5GEPA 3VLYA 4G9PA 3VKQA 2GEPA 3OR2B 3NOYA 3MMCB 3MMCA 3MM5A 3AOPA 4S3CA 4S3FA 3VKTA 3VLXA 3B0LA 3VM1A 4GEPA 1ZJ9A 2V4JA 2AKJA 3MM7A
chains in the Genus database with same CATH topology
2Y0FA 4G38A 3VKPA 3MMBA 3MMBB 3B0HA 4AOPA 4S3DA 3GEOA 3B0JA 2XSJB 2XSJA 3MM8B 3VKRA 4S3BA 3B0MA 4S3EA 3B0NA 1ZJ8A 3MMAA 3MM6B 3MMAB 3MM6A 4S23A 3VLZA 1AOPA 3B0GA 3OR2A 3VKSA 3VM0A 2V4JB 2AOPA 3OR1A 4G39A 4HTRA 8GEPA 4S3AA 7GEPA 3MM5B 4S38A 5AOPA 3MM7B 3MM9B 3MM9A 3OR1B 3MM8A 4S39A 6GEPA 5GEPA 3VLYA 4G9PA 3VKQA 2GEPA 3OR2B 3NOYA 3MMCB 3MMCA 3MM5A 3AOPA 4S3CA 4S3FA 3VKTA 3VLXA 3B0LA 3VM1A 4GEPA 1ZJ9A 2V4JA 2AKJA 3MM7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0F A;  4G38 A;  3VKP A;  3MMB A;  3MMB B;  3B0H A;  4AOP A;  4S3D A;  3GEO A;  3B0J A;  2XSJ B;  2XSJ A;  3MM8 B;  3VKR A;  4S3B A;  3B0M A;  4S3E A;  3B0N A;  1ZJ8 A;  3MMA A;  3MM6 B;  3MMA B;  3MM6 A;  4S23 A;  3VLZ A;  1AOP A;  3B0G A;  3OR2 A;  3VKS A;  3VM0 A;  2V4J B;  2AOP A;  3OR1 A;  4G39 A;  4HTR A;  8GEP A;  4S3A A;  7GEP A;  3MM5 B;  4S38 A;  5AOP A;  3MM7 B;  3MM9 B;  3MM9 A;  3OR1 B;  3MM8 A;  4S39 A;  6GEP A;  5GEP A;  3VLY A;  4G9P A;  3VKQ A;  2GEP A;  3OR2 B;  3NOY A;  3MMC B;  3MMC A;  3MM5 A;  3AOP A;  4S3C A;  4S3F A;  3VKT A;  3VLX A;  3B0L A;  3VM1 A;  4GEP A;  1ZJ9 A;  2V4J A;  2AKJ A;  3MM7 A; 
#chains in the Genus database with same CATH topology
 2Y0F A;  4G38 A;  3VKP A;  3MMB A;  3MMB B;  3B0H A;  4AOP A;  4S3D A;  3GEO A;  3B0J A;  2XSJ B;  2XSJ A;  3MM8 B;  3VKR A;  4S3B A;  3B0M A;  4S3E A;  3B0N A;  1ZJ8 A;  3MMA A;  3MM6 B;  3MMA B;  3MM6 A;  4S23 A;  3VLZ A;  1AOP A;  3B0G A;  3OR2 A;  3VKS A;  3VM0 A;  2V4J B;  2AOP A;  3OR1 A;  4G39 A;  4HTR A;  8GEP A;  4S3A A;  7GEP A;  3MM5 B;  4S38 A;  5AOP A;  3MM7 B;  3MM9 B;  3MM9 A;  3OR1 B;  3MM8 A;  4S39 A;  6GEP A;  5GEP A;  3VLY A;  4G9P A;  3VKQ A;  2GEP A;  3OR2 B;  3NOY A;  3MMC B;  3MMC A;  3MM5 A;  3AOP A;  4S3C A;  4S3F A;  3VKT A;  3VLX A;  3B0L A;  3VM1 A;  4GEP A;  1ZJ9 A;  2V4J A;  2AKJ A;  3MM7 A; 
#chains in the Genus database with same CATH homology
 2Y0F A;  4G38 A;  3VKP A;  3MMB A;  3MMB B;  3B0H A;  4AOP A;  4S3D A;  3GEO A;  3B0J A;  2XSJ B;  2XSJ A;  3MM8 B;  3VKR A;  4S3B A;  3B0M A;  4S3E A;  3B0N A;  1ZJ8 A;  3MMA A;  3MM6 B;  3MMA B;  3MM6 A;  4S23 A;  3VLZ A;  1AOP A;  3B0G A;  3OR2 A;  3VKS A;  3VM0 A;  2V4J B;  2AOP A;  3OR1 A;  4G39 A;  4HTR A;  8GEP A;  4S3A A;  7GEP A;  3MM5 B;  4S38 A;  5AOP A;  3MM7 B;  3MM9 B;  3MM9 A;  3OR1 B;  3MM8 A;  4S39 A;  6GEP A;  5GEP A;  3VLY A;  4G9P A;  3VKQ A;  2GEP A;  3OR2 B;  3NOY A;  3MMC B;  3MMC A;  3MM5 A;  3AOP A;  4S3C A;  4S3F A;  3VKT A;  3VLX A;  3B0L A;  3VM1 A;  4GEP A;  1ZJ9 A;  2V4J A;  2AKJ A;  3MM7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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