3B0GA

Assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
molecule keywords Nitrite reductase
total genus 190
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0gA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0gA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0gA01
4S3BA 1ZJ9A 4S23A 3OR1A 3MM8A 1AOPA 2XSJA 2Y0FA 3MM7A 4S3CA 3B0LA 3VM1A 3OR2B 3VLZA 2V4JB 2GEPA 4G39A 3VLXA 3GEOA 1ZJ8A 3MMAA 4S3EA 5GEPA 7GEPA 4S3DA 8GEPA 3OR2A 3VM0A 2AOPA 3NOYA 3MMAB 3AOPA 2V4JA 3VKRA 4GEPA 4S3FA 3MMBA 4S38A 3VKSA 3B0NA 4S3AA 3MM6B 2XSJB 3MM7B 3VKTA 3B0MA 3OR1B 4G9PA 4S39A 3MMBB 3MMCA 3VKQA 3MM9B 4AOPA 4HTRA 3MM5A 2AKJA 3MMCB 3B0GA 5AOPA 3B0JA 3VLYA 3MM9A 3B0HA 3MM6A 3MM5B 3MM8B 6GEPA 4G38A 3VKPA
chains in the Genus database with same CATH superfamily
4S3BA 1ZJ9A 4S23A 3OR1A 3MM8A 1AOPA 2XSJA 2Y0FA 3MM7A 4S3CA 3B0LA 3VM1A 3OR2B 3VLZA 2V4JB 2GEPA 4G39A 3VLXA 3GEOA 1ZJ8A 3MMAA 4S3EA 5GEPA 7GEPA 4S3DA 8GEPA 3OR2A 3VM0A 2AOPA 3NOYA 3MMAB 3AOPA 2V4JA 3VKRA 4GEPA 4S3FA 3MMBA 4S38A 3VKSA 3B0NA 4S3AA 3MM6B 2XSJB 3MM7B 3VKTA 3B0MA 3OR1B 4G9PA 4S39A 3MMBB 3MMCA 3VKQA 3MM9B 4AOPA 4HTRA 3MM5A 2AKJA 3MMCB 3B0GA 5AOPA 3B0JA 3VLYA 3MM9A 3B0HA 3MM6A 3MM5B 3MM8B 6GEPA 4G38A 3VKPA
chains in the Genus database with same CATH topology
4S3BA 1ZJ9A 4S23A 3OR1A 3MM8A 1AOPA 2XSJA 2Y0FA 3MM7A 4S3CA 3B0LA 3VM1A 3OR2B 3VLZA 2V4JB 2GEPA 4G39A 3VLXA 3GEOA 1ZJ8A 3MMAA 4S3EA 5GEPA 7GEPA 4S3DA 8GEPA 3OR2A 3VM0A 2AOPA 3NOYA 3MMAB 3AOPA 2V4JA 3VKRA 4GEPA 4S3FA 3MMBA 4S38A 3VKSA 3B0NA 4S3AA 3MM6B 2XSJB 3MM7B 3VKTA 3B0MA 3OR1B 4G9PA 4S39A 3MMBB 3MMCA 3VKQA 3MM9B 4AOPA 4HTRA 3MM5A 2AKJA 3MMCB 3B0GA 5AOPA 3B0JA 3VLYA 3MM9A 3B0HA 3MM6A 3MM5B 3MM8B 6GEPA 4G38A 3VKPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4S3B A;  1ZJ9 A;  4S23 A;  3OR1 A;  3MM8 A;  1AOP A;  2XSJ A;  2Y0F A;  3MM7 A;  4S3C A;  3B0L A;  3VM1 A;  3OR2 B;  3VLZ A;  2V4J B;  2GEP A;  4G39 A;  3VLX A;  3GEO A;  1ZJ8 A;  3MMA A;  4S3E A;  5GEP A;  7GEP A;  4S3D A;  8GEP A;  3OR2 A;  3VM0 A;  2AOP A;  3NOY A;  3MMA B;  3AOP A;  2V4J A;  3VKR A;  4GEP A;  4S3F A;  3MMB A;  4S38 A;  3VKS A;  3B0N A;  4S3A A;  3MM6 B;  2XSJ B;  3MM7 B;  3VKT A;  3B0M A;  3OR1 B;  4G9P A;  4S39 A;  3MMB B;  3MMC A;  3VKQ A;  3MM9 B;  4AOP A;  4HTR A;  3MM5 A;  2AKJ A;  3MMC B;  3B0G A;  5AOP A;  3B0J A;  3VLY A;  3MM9 A;  3B0H A;  3MM6 A;  3MM5 B;  3MM8 B;  6GEP A;  4G38 A;  3VKP A; 
#chains in the Genus database with same CATH topology
 4S3B A;  1ZJ9 A;  4S23 A;  3OR1 A;  3MM8 A;  1AOP A;  2XSJ A;  2Y0F A;  3MM7 A;  4S3C A;  3B0L A;  3VM1 A;  3OR2 B;  3VLZ A;  2V4J B;  2GEP A;  4G39 A;  3VLX A;  3GEO A;  1ZJ8 A;  3MMA A;  4S3E A;  5GEP A;  7GEP A;  4S3D A;  8GEP A;  3OR2 A;  3VM0 A;  2AOP A;  3NOY A;  3MMA B;  3AOP A;  2V4J A;  3VKR A;  4GEP A;  4S3F A;  3MMB A;  4S38 A;  3VKS A;  3B0N A;  4S3A A;  3MM6 B;  2XSJ B;  3MM7 B;  3VKT A;  3B0M A;  3OR1 B;  4G9P A;  4S39 A;  3MMB B;  3MMC A;  3VKQ A;  3MM9 B;  4AOP A;  4HTR A;  3MM5 A;  2AKJ A;  3MMC B;  3B0G A;  5AOP A;  3B0J A;  3VLY A;  3MM9 A;  3B0H A;  3MM6 A;  3MM5 B;  3MM8 B;  6GEP A;  4G38 A;  3VKP A; 
#chains in the Genus database with same CATH homology
 4S3B A;  1ZJ9 A;  4S23 A;  3OR1 A;  3MM8 A;  1AOP A;  2XSJ A;  2Y0F A;  3MM7 A;  4S3C A;  3B0L A;  3VM1 A;  3OR2 B;  3VLZ A;  2V4J B;  2GEP A;  4G39 A;  3VLX A;  3GEO A;  1ZJ8 A;  3MMA A;  4S3E A;  5GEP A;  7GEP A;  4S3D A;  8GEP A;  3OR2 A;  3VM0 A;  2AOP A;  3NOY A;  3MMA B;  3AOP A;  2V4J A;  3VKR A;  4GEP A;  4S3F A;  3MMB A;  4S38 A;  3VKS A;  3B0N A;  4S3A A;  3MM6 B;  2XSJ B;  3MM7 B;  3VKT A;  3B0M A;  3OR1 B;  4G9P A;  4S39 A;  3MMB B;  3MMC A;  3VKQ A;  3MM9 B;  4AOP A;  4HTR A;  3MM5 A;  2AKJ A;  3MMC B;  3B0G A;  5AOP A;  3B0J A;  3VLY A;  3MM9 A;  3B0H A;  3MM6 A;  3MM5 B;  3MM8 B;  6GEP A;  4G38 A;  3VKP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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