3B0GA

Assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
538
structure length
538
Chain Sequence
b'VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 190
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0gA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0gA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0gA01
1ZJ9A 3MM9B 3MM5A 3OR1A 4G38A 1AOPA 3VM1A 3B0GA 2XSJA 3MMBA 3OR1B 3MM6A 3MM5B 3MMBB 4S23A 3B0MA 2XSJB 3MM6B 3MM8A 3VM0A 3MMAA 4S3BA 3MM8B 4S3CA 3VKQA 4S39A 4S3DA 3MMAB 3B0JA 4HTRA 2AOPA 3GEOA 3VKPA 8GEPA 3B0NA 3B0LA 3MMCA 3AOPA 6GEPA 3OR2A 3B0HA 4AOPA 4S3EA 3VKRA 3VLYA 3MMCB 2GEPA 3NOYA 3OR2B 4G39A 3VKSA 4GEPA 3MM7A 3VLZA 1ZJ8A 2V4JA 4S38A 2AKJA 3VLXA 3MM7B 4S3AA 2V4JB 5AOPA 5GEPA 4S3FA 3VKTA 4G9PA 2Y0FA 7GEPA 3MM9A
chains in the Genus database with same CATH superfamily
1ZJ9A 3MM9B 3MM5A 3OR1A 4G38A 1AOPA 3VM1A 3B0GA 2XSJA 3MMBA 3OR1B 3MM6A 3MM5B 3MMBB 4S23A 3B0MA 2XSJB 3MM6B 3MM8A 3VM0A 3MMAA 4S3BA 3MM8B 4S3CA 3VKQA 4S39A 4S3DA 3MMAB 3B0JA 4HTRA 2AOPA 3GEOA 3VKPA 8GEPA 3B0NA 3B0LA 3MMCA 3AOPA 6GEPA 3OR2A 3B0HA 4AOPA 4S3EA 3VKRA 3VLYA 3MMCB 2GEPA 3NOYA 3OR2B 4G39A 3VKSA 4GEPA 3MM7A 3VLZA 1ZJ8A 2V4JA 4S38A 2AKJA 3VLXA 3MM7B 4S3AA 2V4JB 5AOPA 5GEPA 4S3FA 3VKTA 4G9PA 2Y0FA 7GEPA 3MM9A
chains in the Genus database with same CATH topology
1ZJ9A 3MM9B 3MM5A 3OR1A 4G38A 1AOPA 3VM1A 3B0GA 2XSJA 3MMBA 3OR1B 3MM6A 3MM5B 3MMBB 4S23A 3B0MA 2XSJB 3MM6B 3MM8A 3VM0A 3MMAA 4S3BA 3MM8B 4S3CA 3VKQA 4S39A 4S3DA 3MMAB 3B0JA 4HTRA 2AOPA 3GEOA 3VKPA 8GEPA 3B0NA 3B0LA 3MMCA 3AOPA 6GEPA 3OR2A 3B0HA 4AOPA 4S3EA 3VKRA 3VLYA 3MMCB 2GEPA 3NOYA 3OR2B 4G39A 3VKSA 4GEPA 3MM7A 3VLZA 1ZJ8A 2V4JA 4S38A 2AKJA 3VLXA 3MM7B 4S3AA 2V4JB 5AOPA 5GEPA 4S3FA 3VKTA 4G9PA 2Y0FA 7GEPA 3MM9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ZJ9 A;  3MM9 B;  3MM5 A;  3OR1 A;  4G38 A;  1AOP A;  3VM1 A;  3B0G A;  2XSJ A;  3MMB A;  3OR1 B;  3MM6 A;  3MM5 B;  3MMB B;  4S23 A;  3B0M A;  2XSJ B;  3MM6 B;  3MM8 A;  3VM0 A;  3MMA A;  4S3B A;  3MM8 B;  4S3C A;  3VKQ A;  4S39 A;  4S3D A;  3MMA B;  3B0J A;  4HTR A;  2AOP A;  3GEO A;  3VKP A;  8GEP A;  3B0N A;  3B0L A;  3MMC A;  3AOP A;  6GEP A;  3OR2 A;  3B0H A;  4AOP A;  4S3E A;  3VKR A;  3VLY A;  3MMC B;  2GEP A;  3NOY A;  3OR2 B;  4G39 A;  3VKS A;  4GEP A;  3MM7 A;  3VLZ A;  1ZJ8 A;  2V4J A;  4S38 A;  2AKJ A;  3VLX A;  3MM7 B;  4S3A A;  2V4J B;  5AOP A;  5GEP A;  4S3F A;  3VKT A;  4G9P A;  2Y0F A;  7GEP A;  3MM9 A; 
#chains in the Genus database with same CATH topology
 1ZJ9 A;  3MM9 B;  3MM5 A;  3OR1 A;  4G38 A;  1AOP A;  3VM1 A;  3B0G A;  2XSJ A;  3MMB A;  3OR1 B;  3MM6 A;  3MM5 B;  3MMB B;  4S23 A;  3B0M A;  2XSJ B;  3MM6 B;  3MM8 A;  3VM0 A;  3MMA A;  4S3B A;  3MM8 B;  4S3C A;  3VKQ A;  4S39 A;  4S3D A;  3MMA B;  3B0J A;  4HTR A;  2AOP A;  3GEO A;  3VKP A;  8GEP A;  3B0N A;  3B0L A;  3MMC A;  3AOP A;  6GEP A;  3OR2 A;  3B0H A;  4AOP A;  4S3E A;  3VKR A;  3VLY A;  3MMC B;  2GEP A;  3NOY A;  3OR2 B;  4G39 A;  3VKS A;  4GEP A;  3MM7 A;  3VLZ A;  1ZJ8 A;  2V4J A;  4S38 A;  2AKJ A;  3VLX A;  3MM7 B;  4S3A A;  2V4J B;  5AOP A;  5GEP A;  4S3F A;  3VKT A;  4G9P A;  2Y0F A;  7GEP A;  3MM9 A; 
#chains in the Genus database with same CATH homology
 1ZJ9 A;  3MM9 B;  3MM5 A;  3OR1 A;  4G38 A;  1AOP A;  3VM1 A;  3B0G A;  2XSJ A;  3MMB A;  3OR1 B;  3MM6 A;  3MM5 B;  3MMB B;  4S23 A;  3B0M A;  2XSJ B;  3MM6 B;  3MM8 A;  3VM0 A;  3MMA A;  4S3B A;  3MM8 B;  4S3C A;  3VKQ A;  4S39 A;  4S3D A;  3MMA B;  3B0J A;  4HTR A;  2AOP A;  3GEO A;  3VKP A;  8GEP A;  3B0N A;  3B0L A;  3MMC A;  3AOP A;  6GEP A;  3OR2 A;  3B0H A;  4AOP A;  4S3E A;  3VKR A;  3VLY A;  3MMC B;  2GEP A;  3NOY A;  3OR2 B;  4G39 A;  3VKS A;  4GEP A;  3MM7 A;  3VLZ A;  1ZJ8 A;  2V4J A;  4S38 A;  2AKJ A;  3VLX A;  3MM7 B;  4S3A A;  2V4J B;  5AOP A;  5GEP A;  4S3F A;  3VKT A;  4G9P A;  2Y0F A;  7GEP A;  3MM9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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