3B0GA

Assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 190
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0gA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0gA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0gA01
3MMAA 3MMAB 3VKRA 3MM6A 3OR1A 3OR1B 3AOPA 4S3FA 7GEPA 1ZJ8A 3MM6B 3MM8B 3MM7B 3MM7A 3MM8A 4S3EA 3B0MA 5GEPA 4G9PA 3VKTA 4S3DA 3OR2A 3OR2B 3VLXA 3VLYA 4S3AA 3B0GA 2AKJA 3B0LA 3B0JA 2GEPA 3B0HA 3VKQA 3VKSA 4S3BA 3VLZA 3GEOA 4S39A 3MMCA 3B0NA 3MMCB 4HTRA 1AOPA 3VKPA 1ZJ9A 3NOYA 3VM1A 2Y0FA 4S38A 4AOPA 5AOPA 6GEPA 2XSJA 2XSJB 3MM9A 3MM9B 4G39A 4GEPA 3MM5A 3MM5B 2V4JA 2V4JB 4S3CA 4G38A 2AOPA 3VM0A 3MMBA 3MMBB 8GEPA 4S23A
chains in the Genus database with same CATH superfamily
3MMAA 3MMAB 3VKRA 3MM6A 3OR1A 3OR1B 3AOPA 4S3FA 7GEPA 1ZJ8A 3MM6B 3MM8B 3MM7B 3MM7A 3MM8A 4S3EA 3B0MA 5GEPA 4G9PA 3VKTA 4S3DA 3OR2A 3OR2B 3VLXA 3VLYA 4S3AA 3B0GA 2AKJA 3B0LA 3B0JA 2GEPA 3B0HA 3VKQA 3VKSA 4S3BA 3VLZA 3GEOA 4S39A 3MMCA 3B0NA 3MMCB 4HTRA 1AOPA 3VKPA 1ZJ9A 3NOYA 3VM1A 2Y0FA 4S38A 4AOPA 5AOPA 6GEPA 2XSJA 2XSJB 3MM9A 3MM9B 4G39A 4GEPA 3MM5A 3MM5B 2V4JA 2V4JB 4S3CA 4G38A 2AOPA 3VM0A 3MMBA 3MMBB 8GEPA 4S23A
chains in the Genus database with same CATH topology
3MMAA 3MMAB 3VKRA 3MM6A 3OR1A 3OR1B 3AOPA 4S3FA 7GEPA 1ZJ8A 3MM6B 3MM8B 3MM7B 3MM7A 3MM8A 4S3EA 3B0MA 5GEPA 4G9PA 3VKTA 4S3DA 3OR2A 3OR2B 3VLXA 3VLYA 4S3AA 3B0GA 2AKJA 3B0LA 3B0JA 2GEPA 3B0HA 3VKQA 3VKSA 4S3BA 3VLZA 3GEOA 4S39A 3MMCA 3B0NA 3MMCB 4HTRA 1AOPA 3VKPA 1ZJ9A 3NOYA 3VM1A 2Y0FA 4S38A 4AOPA 5AOPA 6GEPA 2XSJA 2XSJB 3MM9A 3MM9B 4G39A 4GEPA 3MM5A 3MM5B 2V4JA 2V4JB 4S3CA 4G38A 2AOPA 3VM0A 3MMBA 3MMBB 8GEPA 4S23A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MMA A;  3MMA B;  3VKR A;  3MM6 A;  3OR1 A;  3OR1 B;  3AOP A;  4S3F A;  7GEP A;  1ZJ8 A;  3MM6 B;  3MM8 B;  3MM7 B;  3MM7 A;  3MM8 A;  4S3E A;  3B0M A;  5GEP A;  4G9P A;  3VKT A;  4S3D A;  3OR2 A;  3OR2 B;  3VLX A;  3VLY A;  4S3A A;  3B0G A;  2AKJ A;  3B0L A;  3B0J A;  2GEP A;  3B0H A;  3VKQ A;  3VKS A;  4S3B A;  3VLZ A;  3GEO A;  4S39 A;  3MMC A;  3B0N A;  3MMC B;  4HTR A;  1AOP A;  3VKP A;  1ZJ9 A;  3NOY A;  3VM1 A;  2Y0F A;  4S38 A;  4AOP A;  5AOP A;  6GEP A;  2XSJ A;  2XSJ B;  3MM9 A;  3MM9 B;  4G39 A;  4GEP A;  3MM5 A;  3MM5 B;  2V4J A;  2V4J B;  4S3C A;  4G38 A;  2AOP A;  3VM0 A;  3MMB A;  3MMB B;  8GEP A;  4S23 A; 
#chains in the Genus database with same CATH topology
 3MMA A;  3MMA B;  3VKR A;  3MM6 A;  3OR1 A;  3OR1 B;  3AOP A;  4S3F A;  7GEP A;  1ZJ8 A;  3MM6 B;  3MM8 B;  3MM7 B;  3MM7 A;  3MM8 A;  4S3E A;  3B0M A;  5GEP A;  4G9P A;  3VKT A;  4S3D A;  3OR2 A;  3OR2 B;  3VLX A;  3VLY A;  4S3A A;  3B0G A;  2AKJ A;  3B0L A;  3B0J A;  2GEP A;  3B0H A;  3VKQ A;  3VKS A;  4S3B A;  3VLZ A;  3GEO A;  4S39 A;  3MMC A;  3B0N A;  3MMC B;  4HTR A;  1AOP A;  3VKP A;  1ZJ9 A;  3NOY A;  3VM1 A;  2Y0F A;  4S38 A;  4AOP A;  5AOP A;  6GEP A;  2XSJ A;  2XSJ B;  3MM9 A;  3MM9 B;  4G39 A;  4GEP A;  3MM5 A;  3MM5 B;  2V4J A;  2V4J B;  4S3C A;  4G38 A;  2AOP A;  3VM0 A;  3MMB A;  3MMB B;  8GEP A;  4S23 A; 
#chains in the Genus database with same CATH homology
 3MMA A;  3MMA B;  3VKR A;  3MM6 A;  3OR1 A;  3OR1 B;  3AOP A;  4S3F A;  7GEP A;  1ZJ8 A;  3MM6 B;  3MM8 B;  3MM7 B;  3MM7 A;  3MM8 A;  4S3E A;  3B0M A;  5GEP A;  4G9P A;  3VKT A;  4S3D A;  3OR2 A;  3OR2 B;  3VLX A;  3VLY A;  4S3A A;  3B0G A;  2AKJ A;  3B0L A;  3B0J A;  2GEP A;  3B0H A;  3VKQ A;  3VKS A;  4S3B A;  3VLZ A;  3GEO A;  4S39 A;  3MMC A;  3B0N A;  3MMC B;  4HTR A;  1AOP A;  3VKP A;  1ZJ9 A;  3NOY A;  3VM1 A;  2Y0F A;  4S38 A;  4AOP A;  5AOP A;  6GEP A;  2XSJ A;  2XSJ B;  3MM9 A;  3MM9 B;  4G39 A;  4GEP A;  3MM5 A;  3MM5 B;  2V4J A;  2V4J B;  4S3C A;  4G38 A;  2AOP A;  3VM0 A;  3MMB A;  3MMB B;  8GEP A;  4S23 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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