3B0LA

M175g mutant of assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 192
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0lA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0lA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0lA01
3VLXA 3MM9B 4S3DA 2V4JA 3OR2A 3MMBA 4S39A 4GEPA 2AOPA 3OR1B 4S3CA 1ZJ9A 3MM5A 4AOPA 3MM6A 3MMCA 4HTRA 5AOPA 3VLYA 2V4JB 2AKJA 3B0GA 3OR2B 3MM8A 5GEPA 3MMBB 3MM7A 3VKSA 2XSJA 3MM5B 3MM6B 3VKQA 3GEOA 3B0NA 3MMCB 4G9PA 4G38A 3VKPA 7GEPA 3VM1A 3VKTA 3NOYA 3MM7B 3VKRA 3MM8B 2XSJB 3AOPA 3B0LA 2GEPA 3MMAA 3VM0A 4S3FA 4S38A 4G39A 1ZJ8A 3B0JA 8GEPA 3B0HA 4S3EA 3B0MA 3MM9A 4S3AA 3VLZA 3MMAB 2Y0FA 4S3BA 1AOPA 4S23A 6GEPA 3OR1A
chains in the Genus database with same CATH superfamily
3VLXA 3MM9B 4S3DA 2V4JA 3OR2A 3MMBA 4S39A 4GEPA 2AOPA 3OR1B 4S3CA 1ZJ9A 3MM5A 4AOPA 3MM6A 3MMCA 4HTRA 5AOPA 3VLYA 2V4JB 2AKJA 3B0GA 3OR2B 3MM8A 5GEPA 3MMBB 3MM7A 3VKSA 2XSJA 3MM5B 3MM6B 3VKQA 3GEOA 3B0NA 3MMCB 4G9PA 4G38A 3VKPA 7GEPA 3VM1A 3VKTA 3NOYA 3MM7B 3VKRA 3MM8B 2XSJB 3AOPA 3B0LA 2GEPA 3MMAA 3VM0A 4S3FA 4S38A 4G39A 1ZJ8A 3B0JA 8GEPA 3B0HA 4S3EA 3B0MA 3MM9A 4S3AA 3VLZA 3MMAB 2Y0FA 4S3BA 1AOPA 4S23A 6GEPA 3OR1A
chains in the Genus database with same CATH topology
3VLXA 3MM9B 4S3DA 2V4JA 3OR2A 3MMBA 4S39A 4GEPA 2AOPA 3OR1B 4S3CA 1ZJ9A 3MM5A 4AOPA 3MM6A 3MMCA 4HTRA 5AOPA 3VLYA 2V4JB 2AKJA 3B0GA 3OR2B 3MM8A 5GEPA 3MMBB 3MM7A 3VKSA 2XSJA 3MM5B 3MM6B 3VKQA 3GEOA 3B0NA 3MMCB 4G9PA 4G38A 3VKPA 7GEPA 3VM1A 3VKTA 3NOYA 3MM7B 3VKRA 3MM8B 2XSJB 3AOPA 3B0LA 2GEPA 3MMAA 3VM0A 4S3FA 4S38A 4G39A 1ZJ8A 3B0JA 8GEPA 3B0HA 4S3EA 3B0MA 3MM9A 4S3AA 3VLZA 3MMAB 2Y0FA 4S3BA 1AOPA 4S23A 6GEPA 3OR1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VLX A;  3MM9 B;  4S3D A;  2V4J A;  3OR2 A;  3MMB A;  4S39 A;  4GEP A;  2AOP A;  3OR1 B;  4S3C A;  1ZJ9 A;  3MM5 A;  4AOP A;  3MM6 A;  3MMC A;  4HTR A;  5AOP A;  3VLY A;  2V4J B;  2AKJ A;  3B0G A;  3OR2 B;  3MM8 A;  5GEP A;  3MMB B;  3MM7 A;  3VKS A;  2XSJ A;  3MM5 B;  3MM6 B;  3VKQ A;  3GEO A;  3B0N A;  3MMC B;  4G9P A;  4G38 A;  3VKP A;  7GEP A;  3VM1 A;  3VKT A;  3NOY A;  3MM7 B;  3VKR A;  3MM8 B;  2XSJ B;  3AOP A;  3B0L A;  2GEP A;  3MMA A;  3VM0 A;  4S3F A;  4S38 A;  4G39 A;  1ZJ8 A;  3B0J A;  8GEP A;  3B0H A;  4S3E A;  3B0M A;  3MM9 A;  4S3A A;  3VLZ A;  3MMA B;  2Y0F A;  4S3B A;  1AOP A;  4S23 A;  6GEP A;  3OR1 A; 
#chains in the Genus database with same CATH topology
 3VLX A;  3MM9 B;  4S3D A;  2V4J A;  3OR2 A;  3MMB A;  4S39 A;  4GEP A;  2AOP A;  3OR1 B;  4S3C A;  1ZJ9 A;  3MM5 A;  4AOP A;  3MM6 A;  3MMC A;  4HTR A;  5AOP A;  3VLY A;  2V4J B;  2AKJ A;  3B0G A;  3OR2 B;  3MM8 A;  5GEP A;  3MMB B;  3MM7 A;  3VKS A;  2XSJ A;  3MM5 B;  3MM6 B;  3VKQ A;  3GEO A;  3B0N A;  3MMC B;  4G9P A;  4G38 A;  3VKP A;  7GEP A;  3VM1 A;  3VKT A;  3NOY A;  3MM7 B;  3VKR A;  3MM8 B;  2XSJ B;  3AOP A;  3B0L A;  2GEP A;  3MMA A;  3VM0 A;  4S3F A;  4S38 A;  4G39 A;  1ZJ8 A;  3B0J A;  8GEP A;  3B0H A;  4S3E A;  3B0M A;  3MM9 A;  4S3A A;  3VLZ A;  3MMA B;  2Y0F A;  4S3B A;  1AOP A;  4S23 A;  6GEP A;  3OR1 A; 
#chains in the Genus database with same CATH homology
 3VLX A;  3MM9 B;  4S3D A;  2V4J A;  3OR2 A;  3MMB A;  4S39 A;  4GEP A;  2AOP A;  3OR1 B;  4S3C A;  1ZJ9 A;  3MM5 A;  4AOP A;  3MM6 A;  3MMC A;  4HTR A;  5AOP A;  3VLY A;  2V4J B;  2AKJ A;  3B0G A;  3OR2 B;  3MM8 A;  5GEP A;  3MMB B;  3MM7 A;  3VKS A;  2XSJ A;  3MM5 B;  3MM6 B;  3VKQ A;  3GEO A;  3B0N A;  3MMC B;  4G9P A;  4G38 A;  3VKP A;  7GEP A;  3VM1 A;  3VKT A;  3NOY A;  3MM7 B;  3VKR A;  3MM8 B;  2XSJ B;  3AOP A;  3B0L A;  2GEP A;  3MMA A;  3VM0 A;  4S3F A;  4S38 A;  4G39 A;  1ZJ8 A;  3B0J A;  8GEP A;  3B0H A;  4S3E A;  3B0M A;  3MM9 A;  4S3A A;  3VLZ A;  3MMA B;  2Y0F A;  4S3B A;  1AOP A;  4S23 A;  6GEP A;  3OR1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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