3B0LA

M175g mutant of assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
538
structure length
538
Chain Sequence
b'VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 192
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0lA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0lA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0lA01
3VKQA 3MMBA 3MM9A 3GEOA 3AOPA 3VM1A 3MMCA 2Y0FA 3VKPA 4S3CA 1ZJ9A 3MMAA 3MM7B 4G9PA 3MM8B 3OR1B 3B0GA 4G38A 3NOYA 6GEPA 4S39A 2GEPA 2XSJA 3MM9B 3VKSA 3MM5B 2V4JA 4S3AA 3MMBB 3OR2A 4S3DA 3B0HA 3MMCB 4HTRA 3B0NA 3MMAB 3MM6A 4S3FA 7GEPA 2AOPA 4S38A 3B0JA 4GEPA 3VLZA 5GEPA 3VLYA 2XSJB 4S3EA 4S23A 2V4JB 4S3BA 3B0LA 1ZJ8A 3MM7A 4AOPA 3OR1A 3OR2B 3MM8A 5AOPA 3B0MA 3VKRA 3VLXA 8GEPA 3VM0A 4G39A 3MM6B 1AOPA 2AKJA 3VKTA 3MM5A
chains in the Genus database with same CATH superfamily
3VKQA 3MMBA 3MM9A 3GEOA 3AOPA 3VM1A 3MMCA 2Y0FA 3VKPA 4S3CA 1ZJ9A 3MMAA 3MM7B 4G9PA 3MM8B 3OR1B 3B0GA 4G38A 3NOYA 6GEPA 4S39A 2GEPA 2XSJA 3MM9B 3VKSA 3MM5B 2V4JA 4S3AA 3MMBB 3OR2A 4S3DA 3B0HA 3MMCB 4HTRA 3B0NA 3MMAB 3MM6A 4S3FA 7GEPA 2AOPA 4S38A 3B0JA 4GEPA 3VLZA 5GEPA 3VLYA 2XSJB 4S3EA 4S23A 2V4JB 4S3BA 3B0LA 1ZJ8A 3MM7A 4AOPA 3OR1A 3OR2B 3MM8A 5AOPA 3B0MA 3VKRA 3VLXA 8GEPA 3VM0A 4G39A 3MM6B 1AOPA 2AKJA 3VKTA 3MM5A
chains in the Genus database with same CATH topology
3VKQA 3MMBA 3MM9A 3GEOA 3AOPA 3VM1A 3MMCA 2Y0FA 3VKPA 4S3CA 1ZJ9A 3MMAA 3MM7B 4G9PA 3MM8B 3OR1B 3B0GA 4G38A 3NOYA 6GEPA 4S39A 2GEPA 2XSJA 3MM9B 3VKSA 3MM5B 2V4JA 4S3AA 3MMBB 3OR2A 4S3DA 3B0HA 3MMCB 4HTRA 3B0NA 3MMAB 3MM6A 4S3FA 7GEPA 2AOPA 4S38A 3B0JA 4GEPA 3VLZA 5GEPA 3VLYA 2XSJB 4S3EA 4S23A 2V4JB 4S3BA 3B0LA 1ZJ8A 3MM7A 4AOPA 3OR1A 3OR2B 3MM8A 5AOPA 3B0MA 3VKRA 3VLXA 8GEPA 3VM0A 4G39A 3MM6B 1AOPA 2AKJA 3VKTA 3MM5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VKQ A;  3MMB A;  3MM9 A;  3GEO A;  3AOP A;  3VM1 A;  3MMC A;  2Y0F A;  3VKP A;  4S3C A;  1ZJ9 A;  3MMA A;  3MM7 B;  4G9P A;  3MM8 B;  3OR1 B;  3B0G A;  4G38 A;  3NOY A;  6GEP A;  4S39 A;  2GEP A;  2XSJ A;  3MM9 B;  3VKS A;  3MM5 B;  2V4J A;  4S3A A;  3MMB B;  3OR2 A;  4S3D A;  3B0H A;  3MMC B;  4HTR A;  3B0N A;  3MMA B;  3MM6 A;  4S3F A;  7GEP A;  2AOP A;  4S38 A;  3B0J A;  4GEP A;  3VLZ A;  5GEP A;  3VLY A;  2XSJ B;  4S3E A;  4S23 A;  2V4J B;  4S3B A;  3B0L A;  1ZJ8 A;  3MM7 A;  4AOP A;  3OR1 A;  3OR2 B;  3MM8 A;  5AOP A;  3B0M A;  3VKR A;  3VLX A;  8GEP A;  3VM0 A;  4G39 A;  3MM6 B;  1AOP A;  2AKJ A;  3VKT A;  3MM5 A; 
#chains in the Genus database with same CATH topology
 3VKQ A;  3MMB A;  3MM9 A;  3GEO A;  3AOP A;  3VM1 A;  3MMC A;  2Y0F A;  3VKP A;  4S3C A;  1ZJ9 A;  3MMA A;  3MM7 B;  4G9P A;  3MM8 B;  3OR1 B;  3B0G A;  4G38 A;  3NOY A;  6GEP A;  4S39 A;  2GEP A;  2XSJ A;  3MM9 B;  3VKS A;  3MM5 B;  2V4J A;  4S3A A;  3MMB B;  3OR2 A;  4S3D A;  3B0H A;  3MMC B;  4HTR A;  3B0N A;  3MMA B;  3MM6 A;  4S3F A;  7GEP A;  2AOP A;  4S38 A;  3B0J A;  4GEP A;  3VLZ A;  5GEP A;  3VLY A;  2XSJ B;  4S3E A;  4S23 A;  2V4J B;  4S3B A;  3B0L A;  1ZJ8 A;  3MM7 A;  4AOP A;  3OR1 A;  3OR2 B;  3MM8 A;  5AOP A;  3B0M A;  3VKR A;  3VLX A;  8GEP A;  3VM0 A;  4G39 A;  3MM6 B;  1AOP A;  2AKJ A;  3VKT A;  3MM5 A; 
#chains in the Genus database with same CATH homology
 3VKQ A;  3MMB A;  3MM9 A;  3GEO A;  3AOP A;  3VM1 A;  3MMC A;  2Y0F A;  3VKP A;  4S3C A;  1ZJ9 A;  3MMA A;  3MM7 B;  4G9P A;  3MM8 B;  3OR1 B;  3B0G A;  4G38 A;  3NOY A;  6GEP A;  4S39 A;  2GEP A;  2XSJ A;  3MM9 B;  3VKS A;  3MM5 B;  2V4J A;  4S3A A;  3MMB B;  3OR2 A;  4S3D A;  3B0H A;  3MMC B;  4HTR A;  3B0N A;  3MMA B;  3MM6 A;  4S3F A;  7GEP A;  2AOP A;  4S38 A;  3B0J A;  4GEP A;  3VLZ A;  5GEP A;  3VLY A;  2XSJ B;  4S3E A;  4S23 A;  2V4J B;  4S3B A;  3B0L A;  1ZJ8 A;  3MM7 A;  4AOP A;  3OR1 A;  3OR2 B;  3MM8 A;  5AOP A;  3B0M A;  3VKR A;  3VLX A;  8GEP A;  3VM0 A;  4G39 A;  3MM6 B;  1AOP A;  2AKJ A;  3VKT A;  3MM5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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