3B0LA

M175g mutant of assimilatory nitrite reductase (nii3) from tobbaco leaf
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
molecule keywords Nitrite reductase
total genus 192
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0lA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0lA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0lA01
3MMAA 3MM7B 3B0GA 3VLXA 3MM9B 3NOYA 3MMBA 4G9PA 3MM5A 4AOPA 2AOPA 3B0MA 2GEPA 3B0LA 4S3AA 6GEPA 1ZJ8A 3VLYA 4G38A 2XSJA 5GEPA 2AKJA 4S3CA 4GEPA 1AOPA 3VKTA 3VKSA 2V4JA 3VKRA 4HTRA 3MMAB 3MM7A 5AOPA 3OR2A 4S3DA 3MM6A 2V4JB 4G39A 4S39A 3B0NA 3OR1B 4S3BA 3VM0A 3VLZA 3B0HA 3AOPA 2XSJB 3B0JA 2Y0FA 3MM8B 3GEOA 3MM8A 4S23A 3VM1A 3VKPA 3MM9A 4S3FA 3VKQA 3OR1A 3MMCB 4S38A 4S3EA 1ZJ9A 3MM5B 7GEPA 8GEPA 3MM6B 3OR2B 3MMBB 3MMCA
chains in the Genus database with same CATH superfamily
3MMAA 3MM7B 3B0GA 3VLXA 3MM9B 3NOYA 3MMBA 4G9PA 3MM5A 4AOPA 2AOPA 3B0MA 2GEPA 3B0LA 4S3AA 6GEPA 1ZJ8A 3VLYA 4G38A 2XSJA 5GEPA 2AKJA 4S3CA 4GEPA 1AOPA 3VKTA 3VKSA 2V4JA 3VKRA 4HTRA 3MMAB 3MM7A 5AOPA 3OR2A 4S3DA 3MM6A 2V4JB 4G39A 4S39A 3B0NA 3OR1B 4S3BA 3VM0A 3VLZA 3B0HA 3AOPA 2XSJB 3B0JA 2Y0FA 3MM8B 3GEOA 3MM8A 4S23A 3VM1A 3VKPA 3MM9A 4S3FA 3VKQA 3OR1A 3MMCB 4S38A 4S3EA 1ZJ9A 3MM5B 7GEPA 8GEPA 3MM6B 3OR2B 3MMBB 3MMCA
chains in the Genus database with same CATH topology
3MMAA 3MM7B 3B0GA 3VLXA 3MM9B 3NOYA 3MMBA 4G9PA 3MM5A 4AOPA 2AOPA 3B0MA 2GEPA 3B0LA 4S3AA 6GEPA 1ZJ8A 3VLYA 4G38A 2XSJA 5GEPA 2AKJA 4S3CA 4GEPA 1AOPA 3VKTA 3VKSA 2V4JA 3VKRA 4HTRA 3MMAB 3MM7A 5AOPA 3OR2A 4S3DA 3MM6A 2V4JB 4G39A 4S39A 3B0NA 3OR1B 4S3BA 3VM0A 3VLZA 3B0HA 3AOPA 2XSJB 3B0JA 2Y0FA 3MM8B 3GEOA 3MM8A 4S23A 3VM1A 3VKPA 3MM9A 4S3FA 3VKQA 3OR1A 3MMCB 4S38A 4S3EA 1ZJ9A 3MM5B 7GEPA 8GEPA 3MM6B 3OR2B 3MMBB 3MMCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MMA A;  3MM7 B;  3B0G A;  3VLX A;  3MM9 B;  3NOY A;  3MMB A;  4G9P A;  3MM5 A;  4AOP A;  2AOP A;  3B0M A;  2GEP A;  3B0L A;  4S3A A;  6GEP A;  1ZJ8 A;  3VLY A;  4G38 A;  2XSJ A;  5GEP A;  2AKJ A;  4S3C A;  4GEP A;  1AOP A;  3VKT A;  3VKS A;  2V4J A;  3VKR A;  4HTR A;  3MMA B;  3MM7 A;  5AOP A;  3OR2 A;  4S3D A;  3MM6 A;  2V4J B;  4G39 A;  4S39 A;  3B0N A;  3OR1 B;  4S3B A;  3VM0 A;  3VLZ A;  3B0H A;  3AOP A;  2XSJ B;  3B0J A;  2Y0F A;  3MM8 B;  3GEO A;  3MM8 A;  4S23 A;  3VM1 A;  3VKP A;  3MM9 A;  4S3F A;  3VKQ A;  3OR1 A;  3MMC B;  4S38 A;  4S3E A;  1ZJ9 A;  3MM5 B;  7GEP A;  8GEP A;  3MM6 B;  3OR2 B;  3MMB B;  3MMC A; 
#chains in the Genus database with same CATH topology
 3MMA A;  3MM7 B;  3B0G A;  3VLX A;  3MM9 B;  3NOY A;  3MMB A;  4G9P A;  3MM5 A;  4AOP A;  2AOP A;  3B0M A;  2GEP A;  3B0L A;  4S3A A;  6GEP A;  1ZJ8 A;  3VLY A;  4G38 A;  2XSJ A;  5GEP A;  2AKJ A;  4S3C A;  4GEP A;  1AOP A;  3VKT A;  3VKS A;  2V4J A;  3VKR A;  4HTR A;  3MMA B;  3MM7 A;  5AOP A;  3OR2 A;  4S3D A;  3MM6 A;  2V4J B;  4G39 A;  4S39 A;  3B0N A;  3OR1 B;  4S3B A;  3VM0 A;  3VLZ A;  3B0H A;  3AOP A;  2XSJ B;  3B0J A;  2Y0F A;  3MM8 B;  3GEO A;  3MM8 A;  4S23 A;  3VM1 A;  3VKP A;  3MM9 A;  4S3F A;  3VKQ A;  3OR1 A;  3MMC B;  4S38 A;  4S3E A;  1ZJ9 A;  3MM5 B;  7GEP A;  8GEP A;  3MM6 B;  3OR2 B;  3MMB B;  3MMC A; 
#chains in the Genus database with same CATH homology
 3MMA A;  3MM7 B;  3B0G A;  3VLX A;  3MM9 B;  3NOY A;  3MMB A;  4G9P A;  3MM5 A;  4AOP A;  2AOP A;  3B0M A;  2GEP A;  3B0L A;  4S3A A;  6GEP A;  1ZJ8 A;  3VLY A;  4G38 A;  2XSJ A;  5GEP A;  2AKJ A;  4S3C A;  4GEP A;  1AOP A;  3VKT A;  3VKS A;  2V4J A;  3VKR A;  4HTR A;  3MMA B;  3MM7 A;  5AOP A;  3OR2 A;  4S3D A;  3MM6 A;  2V4J B;  4G39 A;  4S39 A;  3B0N A;  3OR1 B;  4S3B A;  3VM0 A;  3VLZ A;  3B0H A;  3AOP A;  2XSJ B;  3B0J A;  2Y0F A;  3MM8 B;  3GEO A;  3MM8 A;  4S23 A;  3VM1 A;  3VKP A;  3MM9 A;  4S3F A;  3VKQ A;  3OR1 A;  3MMC B;  4S38 A;  4S3E A;  1ZJ9 A;  3MM5 B;  7GEP A;  8GEP A;  3MM6 B;  3OR2 B;  3MMB B;  3MMC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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