3B0HA

Assimilatory nitrite reductase (nii4) from tobbaco root
Total Genus 192
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
192
sequence length
536
structure length
536
Chain Sequence
b'SERLEPRVEEKDGYWVLKEKFRQGINPAEKAKIEKEPMKLFMENGIEDLAKISLEEIEGSKLTKDDIDVRLKWLGLFHRRKHHYGRFMMRLKLPNGVTTSSQTRYLASVIRKYGKDGCADVTTRQNWQIRGVVLPDVPEILKGLDEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSQYVTANFRGNPAVTNLPRKWNVCVIGSHDLYEHPQINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAVPLDAWVPADDVVPVCKAILEAYRDLGTRGNRQKTRMMWLVDELGVEGFRAEVVKRMPQQKLDRESTEDLVQKQWERREYLGVHPQKQEGYSFVGLHIPVGRVQADDMDELARLADEYGSGELRLTVEQNIIIPNVKNSKIEALLNEPLLKNRFSTDPPILMKNLVACTGNQFCGKAIIETKARSMKITEEVQLLVSITQPVRMHWTGCPNSCAQVQVADIGFMGCLTRKEGKTVEGADVYLGGRIGSDSHLGDVYKKSVPCEDLVPIIVDLLVDNFGAVPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title Structure-function relationship of assimilatory nitrite reductases from the leaf and root of tobacco based on high resolution structures
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 192
structure length 536
sequence length 536
chains with identical sequence B
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0hA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3b0hA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3b0hA01
2XSJB 4S38A 3GEOA 3VLYA 4AOPA 1ZJ8A 3VLXA 3MMBA 3MM7A 3OR2A 4S39A 3VKSA 4G9PA 3VLZA 1AOPA 3MMBB 3MM7B 3MMCA 3B0HA 4GEPA 3VKRA 4S23A 4G39A 3OR2B 3NOYA 4S3BA 2V4JA 2Y0FA 3MMCB 3MM9A 3MM8A 4S3EA 8GEPA 4G38A 2AOPA 3VKPA 2V4JB 3MM9B 2GEPA 3MM8B 4S3FA 3B0JA 7GEPA 4S3AA 3OR1A 3VKTA 5AOPA 3VKQA 3B0MA 3MM5A 3B0NA 6GEPA 3MMAA 3MM6A 3OR1B 4HTRA 4S3CA 3VM0A 3MMAB 5GEPA 2XSJA 3B0GA 3B0LA 3MM5B 3AOPA 3MM6B 3VM1A 1ZJ9A 4S3DA 2AKJA
chains in the Genus database with same CATH superfamily
2XSJB 4S38A 3GEOA 3VLYA 4AOPA 1ZJ8A 3VLXA 3MMBA 3MM7A 3OR2A 4S39A 3VKSA 4G9PA 3VLZA 1AOPA 3MMBB 3MM7B 3MMCA 3B0HA 4GEPA 3VKRA 4S23A 4G39A 3OR2B 3NOYA 4S3BA 2V4JA 2Y0FA 3MMCB 3MM9A 3MM8A 4S3EA 8GEPA 4G38A 2AOPA 3VKPA 2V4JB 3MM9B 2GEPA 3MM8B 4S3FA 3B0JA 7GEPA 4S3AA 3OR1A 3VKTA 5AOPA 3VKQA 3B0MA 3MM5A 3B0NA 6GEPA 3MMAA 3MM6A 3OR1B 4HTRA 4S3CA 3VM0A 3MMAB 5GEPA 2XSJA 3B0GA 3B0LA 3MM5B 3AOPA 3MM6B 3VM1A 1ZJ9A 4S3DA 2AKJA
chains in the Genus database with same CATH topology
2XSJB 4S38A 3GEOA 3VLYA 4AOPA 1ZJ8A 3VLXA 3MMBA 3MM7A 3OR2A 4S39A 3VKSA 4G9PA 3VLZA 1AOPA 3MMBB 3MM7B 3MMCA 3B0HA 4GEPA 3VKRA 4S23A 4G39A 3OR2B 3NOYA 4S3BA 2V4JA 2Y0FA 3MMCB 3MM9A 3MM8A 4S3EA 8GEPA 4G38A 2AOPA 3VKPA 2V4JB 3MM9B 2GEPA 3MM8B 4S3FA 3B0JA 7GEPA 4S3AA 3OR1A 3VKTA 5AOPA 3VKQA 3B0MA 3MM5A 3B0NA 6GEPA 3MMAA 3MM6A 3OR1B 4HTRA 4S3CA 3VM0A 3MMAB 5GEPA 2XSJA 3B0GA 3B0LA 3MM5B 3AOPA 3MM6B 3VM1A 1ZJ9A 4S3DA 2AKJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XSJ B;  4S38 A;  3GEO A;  3VLY A;  4AOP A;  1ZJ8 A;  3VLX A;  3MMB A;  3MM7 A;  3OR2 A;  4S39 A;  3VKS A;  4G9P A;  3VLZ A;  1AOP A;  3MMB B;  3MM7 B;  3MMC A;  3B0H A;  4GEP A;  3VKR A;  4S23 A;  4G39 A;  3OR2 B;  3NOY A;  4S3B A;  2V4J A;  2Y0F A;  3MMC B;  3MM9 A;  3MM8 A;  4S3E A;  8GEP A;  4G38 A;  2AOP A;  3VKP A;  2V4J B;  3MM9 B;  2GEP A;  3MM8 B;  4S3F A;  3B0J A;  7GEP A;  4S3A A;  3OR1 A;  3VKT A;  5AOP A;  3VKQ A;  3B0M A;  3MM5 A;  3B0N A;  6GEP A;  3MMA A;  3MM6 A;  3OR1 B;  4HTR A;  4S3C A;  3VM0 A;  3MMA B;  5GEP A;  2XSJ A;  3B0G A;  3B0L A;  3MM5 B;  3AOP A;  3MM6 B;  3VM1 A;  1ZJ9 A;  4S3D A;  2AKJ A; 
#chains in the Genus database with same CATH topology
 2XSJ B;  4S38 A;  3GEO A;  3VLY A;  4AOP A;  1ZJ8 A;  3VLX A;  3MMB A;  3MM7 A;  3OR2 A;  4S39 A;  3VKS A;  4G9P A;  3VLZ A;  1AOP A;  3MMB B;  3MM7 B;  3MMC A;  3B0H A;  4GEP A;  3VKR A;  4S23 A;  4G39 A;  3OR2 B;  3NOY A;  4S3B A;  2V4J A;  2Y0F A;  3MMC B;  3MM9 A;  3MM8 A;  4S3E A;  8GEP A;  4G38 A;  2AOP A;  3VKP A;  2V4J B;  3MM9 B;  2GEP A;  3MM8 B;  4S3F A;  3B0J A;  7GEP A;  4S3A A;  3OR1 A;  3VKT A;  5AOP A;  3VKQ A;  3B0M A;  3MM5 A;  3B0N A;  6GEP A;  3MMA A;  3MM6 A;  3OR1 B;  4HTR A;  4S3C A;  3VM0 A;  3MMA B;  5GEP A;  2XSJ A;  3B0G A;  3B0L A;  3MM5 B;  3AOP A;  3MM6 B;  3VM1 A;  1ZJ9 A;  4S3D A;  2AKJ A; 
#chains in the Genus database with same CATH homology
 2XSJ B;  4S38 A;  3GEO A;  3VLY A;  4AOP A;  1ZJ8 A;  3VLX A;  3MMB A;  3MM7 A;  3OR2 A;  4S39 A;  3VKS A;  4G9P A;  3VLZ A;  1AOP A;  3MMB B;  3MM7 B;  3MMC A;  3B0H A;  4GEP A;  3VKR A;  4S23 A;  4G39 A;  3OR2 B;  3NOY A;  4S3B A;  2V4J A;  2Y0F A;  3MMC B;  3MM9 A;  3MM8 A;  4S3E A;  8GEP A;  4G38 A;  2AOP A;  3VKP A;  2V4J B;  3MM9 B;  2GEP A;  3MM8 B;  4S3F A;  3B0J A;  7GEP A;  4S3A A;  3OR1 A;  3VKT A;  5AOP A;  3VKQ A;  3B0M A;  3MM5 A;  3B0N A;  6GEP A;  3MMA A;  3MM6 A;  3OR1 B;  4HTR A;  4S3C A;  3VM0 A;  3MMA B;  5GEP A;  2XSJ A;  3B0G A;  3B0L A;  3MM5 B;  3AOP A;  3MM6 B;  3VM1 A;  1ZJ9 A;  4S3D A;  2AKJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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