4HTRA

N149w variant of sirhp bound to sulfite
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
488
structure length
441
Chain Sequence
RCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDAMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase/substrate
molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
total genus 155
structure length 441
sequence length 488
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4htrA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4htrA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4htrA01
3OR1A 2AKJA 4S23A 3OR2B 4G39A 2V4JB 3MM8A 1AOPA 3MMBB 3VKTA 4S38A 3B0MA 4AOPA 3NOYA 2V4JA 3MM8B 4S3DA 5AOPA 3B0GA 3AOPA 3OR1B 4S3BA 3GEOA 3VKQA 3MM7A 6GEPA 5GEPA 3VM1A 2XSJA 3MM5A 4S3EA 4HTRA 3VKPA 3OR2A 3VLZA 3MM6A 4GEPA 1ZJ9A 3B0LA 2GEPA 3MM6B 7GEPA 3B0JA 3B0HA 4S3CA 4S3AA 3MM9B 3MMAA 2XSJB 2Y0FA 3B0NA 4G38A 3VKSA 3MMCA 4S39A 3MM9A 3VKRA 3MMBA 3VLYA 4S3FA 2AOPA 3VLXA 3VM0A 3MMCB 1ZJ8A 8GEPA 3MMAB 4G9PA 3MM5B 3MM7B
chains in the Genus database with same CATH superfamily
3OR1A 2AKJA 4S23A 3OR2B 4G39A 2V4JB 3MM8A 1AOPA 3MMBB 3VKTA 4S38A 3B0MA 4AOPA 3NOYA 2V4JA 3MM8B 4S3DA 5AOPA 3B0GA 3AOPA 3OR1B 4S3BA 3GEOA 3VKQA 3MM7A 6GEPA 5GEPA 3VM1A 2XSJA 3MM5A 4S3EA 4HTRA 3VKPA 3OR2A 3VLZA 3MM6A 4GEPA 1ZJ9A 3B0LA 2GEPA 3MM6B 7GEPA 3B0JA 3B0HA 4S3CA 4S3AA 3MM9B 3MMAA 2XSJB 2Y0FA 3B0NA 4G38A 3VKSA 3MMCA 4S39A 3MM9A 3VKRA 3MMBA 3VLYA 4S3FA 2AOPA 3VLXA 3VM0A 3MMCB 1ZJ8A 8GEPA 3MMAB 4G9PA 3MM5B 3MM7B
chains in the Genus database with same CATH topology
3OR1A 2AKJA 4S23A 3OR2B 4G39A 2V4JB 3MM8A 1AOPA 3MMBB 3VKTA 4S38A 3B0MA 4AOPA 3NOYA 2V4JA 3MM8B 4S3DA 5AOPA 3B0GA 3AOPA 3OR1B 4S3BA 3GEOA 3VKQA 3MM7A 6GEPA 5GEPA 3VM1A 2XSJA 3MM5A 4S3EA 4HTRA 3VKPA 3OR2A 3VLZA 3MM6A 4GEPA 1ZJ9A 3B0LA 2GEPA 3MM6B 7GEPA 3B0JA 3B0HA 4S3CA 4S3AA 3MM9B 3MMAA 2XSJB 2Y0FA 3B0NA 4G38A 3VKSA 3MMCA 4S39A 3MM9A 3VKRA 3MMBA 3VLYA 4S3FA 2AOPA 3VLXA 3VM0A 3MMCB 1ZJ8A 8GEPA 3MMAB 4G9PA 3MM5B 3MM7B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OR1 A;  2AKJ A;  4S23 A;  3OR2 B;  4G39 A;  2V4J B;  3MM8 A;  1AOP A;  3MMB B;  3VKT A;  4S38 A;  3B0M A;  4AOP A;  3NOY A;  2V4J A;  3MM8 B;  4S3D A;  5AOP A;  3B0G A;  3AOP A;  3OR1 B;  4S3B A;  3GEO A;  3VKQ A;  3MM7 A;  6GEP A;  5GEP A;  3VM1 A;  2XSJ A;  3MM5 A;  4S3E A;  4HTR A;  3VKP A;  3OR2 A;  3VLZ A;  3MM6 A;  4GEP A;  1ZJ9 A;  3B0L A;  2GEP A;  3MM6 B;  7GEP A;  3B0J A;  3B0H A;  4S3C A;  4S3A A;  3MM9 B;  3MMA A;  2XSJ B;  2Y0F A;  3B0N A;  4G38 A;  3VKS A;  3MMC A;  4S39 A;  3MM9 A;  3VKR A;  3MMB A;  3VLY A;  4S3F A;  2AOP A;  3VLX A;  3VM0 A;  3MMC B;  1ZJ8 A;  8GEP A;  3MMA B;  4G9P A;  3MM5 B;  3MM7 B; 
#chains in the Genus database with same CATH topology
 3OR1 A;  2AKJ A;  4S23 A;  3OR2 B;  4G39 A;  2V4J B;  3MM8 A;  1AOP A;  3MMB B;  3VKT A;  4S38 A;  3B0M A;  4AOP A;  3NOY A;  2V4J A;  3MM8 B;  4S3D A;  5AOP A;  3B0G A;  3AOP A;  3OR1 B;  4S3B A;  3GEO A;  3VKQ A;  3MM7 A;  6GEP A;  5GEP A;  3VM1 A;  2XSJ A;  3MM5 A;  4S3E A;  4HTR A;  3VKP A;  3OR2 A;  3VLZ A;  3MM6 A;  4GEP A;  1ZJ9 A;  3B0L A;  2GEP A;  3MM6 B;  7GEP A;  3B0J A;  3B0H A;  4S3C A;  4S3A A;  3MM9 B;  3MMA A;  2XSJ B;  2Y0F A;  3B0N A;  4G38 A;  3VKS A;  3MMC A;  4S39 A;  3MM9 A;  3VKR A;  3MMB A;  3VLY A;  4S3F A;  2AOP A;  3VLX A;  3VM0 A;  3MMC B;  1ZJ8 A;  8GEP A;  3MMA B;  4G9P A;  3MM5 B;  3MM7 B; 
#chains in the Genus database with same CATH homology
 3OR1 A;  2AKJ A;  4S23 A;  3OR2 B;  4G39 A;  2V4J B;  3MM8 A;  1AOP A;  3MMB B;  3VKT A;  4S38 A;  3B0M A;  4AOP A;  3NOY A;  2V4J A;  3MM8 B;  4S3D A;  5AOP A;  3B0G A;  3AOP A;  3OR1 B;  4S3B A;  3GEO A;  3VKQ A;  3MM7 A;  6GEP A;  5GEP A;  3VM1 A;  2XSJ A;  3MM5 A;  4S3E A;  4HTR A;  3VKP A;  3OR2 A;  3VLZ A;  3MM6 A;  4GEP A;  1ZJ9 A;  3B0L A;  2GEP A;  3MM6 B;  7GEP A;  3B0J A;  3B0H A;  4S3C A;  4S3A A;  3MM9 B;  3MMA A;  2XSJ B;  2Y0F A;  3B0N A;  4G38 A;  3VKS A;  3MMC A;  4S39 A;  3MM9 A;  3VKR A;  3MMB A;  3VLY A;  4S3F A;  2AOP A;  3VLX A;  3VM0 A;  3MMC B;  1ZJ8 A;  8GEP A;  3MMA B;  4G9P A;  3MM5 B;  3MM7 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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