4HTRA

N149w variant of sirhp bound to sulfite
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
488
structure length
441
Chain Sequence
RCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDAMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Sulfite reductase [NADPH] hemoprotein beta-component
publication title Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Oxidoreductase/substrate
total genus 155
structure length 441
sequence length 488
ec nomenclature ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date 2012-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4htrA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 4htrA03
3.90.480.10 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein;Domain 2 4htrA01
2AOPA 1ZJ8A 3MM7A 3B0NA 4S23A 3MM5B 4HTRA 3VM0A 3VLYA 3B0HA 4AOPA 3MM5A 3B0GA 4G38A 3B0MA 3VLZA 4GEPA 4S3BA 4S3FA 2V4JB 3VKTA 5AOPA 3MMAA 4S3CA 2AKJA 3VKRA 4S38A 3B0LA 3MMCB 2V4JA 3MM6B 3MM9B 3OR1B 3MMBB 2XSJB 3VLXA 7GEPA 3MM9A 8GEPA 4G9PA 2GEPA 2XSJA 3MMCA 5GEPA 3VKQA 3MM6A 3OR1A 3MMBA 2Y0FA 3VKPA 3GEOA 3NOYA 3VKSA 4S3EA 4S3DA 3OR2B 4G39A 4S3AA 6GEPA 3MM8B 3OR2A 3MMAB 3AOPA 4S39A 3VM1A 3MM7B 3B0JA 1AOPA 1ZJ9A 3MM8A
chains in the Genus database with same CATH superfamily
2AOPA 1ZJ8A 3MM7A 3B0NA 4S23A 3MM5B 4HTRA 3VM0A 3VLYA 3B0HA 4AOPA 3MM5A 3B0GA 4G38A 3B0MA 3VLZA 4GEPA 4S3BA 4S3FA 2V4JB 3VKTA 5AOPA 3MMAA 4S3CA 2AKJA 3VKRA 4S38A 3B0LA 3MMCB 2V4JA 3MM6B 3MM9B 3OR1B 3MMBB 2XSJB 3VLXA 7GEPA 3MM9A 8GEPA 4G9PA 2GEPA 2XSJA 3MMCA 5GEPA 3VKQA 3MM6A 3OR1A 3MMBA 2Y0FA 3VKPA 3GEOA 3NOYA 3VKSA 4S3EA 4S3DA 3OR2B 4G39A 4S3AA 6GEPA 3MM8B 3OR2A 3MMAB 3AOPA 4S39A 3VM1A 3MM7B 3B0JA 1AOPA 1ZJ9A 3MM8A
chains in the Genus database with same CATH topology
2AOPA 1ZJ8A 3MM7A 3B0NA 4S23A 3MM5B 4HTRA 3VM0A 3VLYA 3B0HA 4AOPA 3MM5A 3B0GA 4G38A 3B0MA 3VLZA 4GEPA 4S3BA 4S3FA 2V4JB 3VKTA 5AOPA 3MMAA 4S3CA 2AKJA 3VKRA 4S38A 3B0LA 3MMCB 2V4JA 3MM6B 3MM9B 3OR1B 3MMBB 2XSJB 3VLXA 7GEPA 3MM9A 8GEPA 4G9PA 2GEPA 2XSJA 3MMCA 5GEPA 3VKQA 3MM6A 3OR1A 3MMBA 2Y0FA 3VKPA 3GEOA 3NOYA 3VKSA 4S3EA 4S3DA 3OR2B 4G39A 4S3AA 6GEPA 3MM8B 3OR2A 3MMAB 3AOPA 4S39A 3VM1A 3MM7B 3B0JA 1AOPA 1ZJ9A 3MM8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AOP A;  1ZJ8 A;  3MM7 A;  3B0N A;  4S23 A;  3MM5 B;  4HTR A;  3VM0 A;  3VLY A;  3B0H A;  4AOP A;  3MM5 A;  3B0G A;  4G38 A;  3B0M A;  3VLZ A;  4GEP A;  4S3B A;  4S3F A;  2V4J B;  3VKT A;  5AOP A;  3MMA A;  4S3C A;  2AKJ A;  3VKR A;  4S38 A;  3B0L A;  3MMC B;  2V4J A;  3MM6 B;  3MM9 B;  3OR1 B;  3MMB B;  2XSJ B;  3VLX A;  7GEP A;  3MM9 A;  8GEP A;  4G9P A;  2GEP A;  2XSJ A;  3MMC A;  5GEP A;  3VKQ A;  3MM6 A;  3OR1 A;  3MMB A;  2Y0F A;  3VKP A;  3GEO A;  3NOY A;  3VKS A;  4S3E A;  4S3D A;  3OR2 B;  4G39 A;  4S3A A;  6GEP A;  3MM8 B;  3OR2 A;  3MMA B;  3AOP A;  4S39 A;  3VM1 A;  3MM7 B;  3B0J A;  1AOP A;  1ZJ9 A;  3MM8 A; 
#chains in the Genus database with same CATH topology
 2AOP A;  1ZJ8 A;  3MM7 A;  3B0N A;  4S23 A;  3MM5 B;  4HTR A;  3VM0 A;  3VLY A;  3B0H A;  4AOP A;  3MM5 A;  3B0G A;  4G38 A;  3B0M A;  3VLZ A;  4GEP A;  4S3B A;  4S3F A;  2V4J B;  3VKT A;  5AOP A;  3MMA A;  4S3C A;  2AKJ A;  3VKR A;  4S38 A;  3B0L A;  3MMC B;  2V4J A;  3MM6 B;  3MM9 B;  3OR1 B;  3MMB B;  2XSJ B;  3VLX A;  7GEP A;  3MM9 A;  8GEP A;  4G9P A;  2GEP A;  2XSJ A;  3MMC A;  5GEP A;  3VKQ A;  3MM6 A;  3OR1 A;  3MMB A;  2Y0F A;  3VKP A;  3GEO A;  3NOY A;  3VKS A;  4S3E A;  4S3D A;  3OR2 B;  4G39 A;  4S3A A;  6GEP A;  3MM8 B;  3OR2 A;  3MMA B;  3AOP A;  4S39 A;  3VM1 A;  3MM7 B;  3B0J A;  1AOP A;  1ZJ9 A;  3MM8 A; 
#chains in the Genus database with same CATH homology
 2AOP A;  1ZJ8 A;  3MM7 A;  3B0N A;  4S23 A;  3MM5 B;  4HTR A;  3VM0 A;  3VLY A;  3B0H A;  4AOP A;  3MM5 A;  3B0G A;  4G38 A;  3B0M A;  3VLZ A;  4GEP A;  4S3B A;  4S3F A;  2V4J B;  3VKT A;  5AOP A;  3MMA A;  4S3C A;  2AKJ A;  3VKR A;  4S38 A;  3B0L A;  3MMC B;  2V4J A;  3MM6 B;  3MM9 B;  3OR1 B;  3MMB B;  2XSJ B;  3VLX A;  7GEP A;  3MM9 A;  8GEP A;  4G9P A;  2GEP A;  2XSJ A;  3MMC A;  5GEP A;  3VKQ A;  3MM6 A;  3OR1 A;  3MMB A;  2Y0F A;  3VKP A;  3GEO A;  3NOY A;  3VKS A;  4S3E A;  4S3D A;  3OR2 B;  4G39 A;  4S3A A;  6GEP A;  3MM8 B;  3OR2 A;  3MMA B;  3AOP A;  4S39 A;  3VM1 A;  3MM7 B;  3B0J A;  1AOP A;  1ZJ9 A;  3MM8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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