3VLYA

Assimilatory nitrite reductase (nii3) - n226k mutant - so3 partial complex from tobacco leaf
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
molecule keywords Nitrite reductase
total genus 190
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlyA01
3MMCB 2AKJA 4S38A 1ZJ8A 3MM6A 3MMAB 3MMAA 3AOPA 3OR2A 5AOPA 3MM8B 4GEPA 3VKTA 3MM5A 3VKSA 3NOYA 3B0MA 3MM5B 3MM7A 3VLXA 3VM1A 3MM8A 3OR1A 3VLYA 4S3FA 2XSJA 4S3CA 3B0GA 8GEPA 3MMBB 3B0NA 2XSJB 3MM9A 3MMCA 1AOPA 2V4JA 6GEPA 4S3AA 4S3DA 2AOPA 3B0HA 2GEPA 3VKRA 2Y0FA 3OR2B 7GEPA 4S3BA 3VKQA 3MM6B 1ZJ9A 3GEOA 3MMBA 3MM9B 3OR1B 4G38A 4G39A 3VLZA 4S23A 4HTRA 5GEPA 4G9PA 4S3EA 3VKPA 4AOPA 3B0LA 4S39A 3B0JA 3MM7B 3VM0A 2V4JB
chains in the Genus database with same CATH superfamily
3MMCB 2AKJA 4S38A 1ZJ8A 3MM6A 3MMAB 3MMAA 3AOPA 3OR2A 5AOPA 3MM8B 4GEPA 3VKTA 3MM5A 3VKSA 3NOYA 3B0MA 3MM5B 3MM7A 3VLXA 3VM1A 3MM8A 3OR1A 3VLYA 4S3FA 2XSJA 4S3CA 3B0GA 8GEPA 3MMBB 3B0NA 2XSJB 3MM9A 3MMCA 1AOPA 2V4JA 6GEPA 4S3AA 4S3DA 2AOPA 3B0HA 2GEPA 3VKRA 2Y0FA 3OR2B 7GEPA 4S3BA 3VKQA 3MM6B 1ZJ9A 3GEOA 3MMBA 3MM9B 3OR1B 4G38A 4G39A 3VLZA 4S23A 4HTRA 5GEPA 4G9PA 4S3EA 3VKPA 4AOPA 3B0LA 4S39A 3B0JA 3MM7B 3VM0A 2V4JB
chains in the Genus database with same CATH topology
3MMCB 2AKJA 4S38A 1ZJ8A 3MM6A 3MMAB 3MMAA 3AOPA 3OR2A 5AOPA 3MM8B 4GEPA 3VKTA 3MM5A 3VKSA 3NOYA 3B0MA 3MM5B 3MM7A 3VLXA 3VM1A 3MM8A 3OR1A 3VLYA 4S3FA 2XSJA 4S3CA 3B0GA 8GEPA 3MMBB 3B0NA 2XSJB 3MM9A 3MMCA 1AOPA 2V4JA 6GEPA 4S3AA 4S3DA 2AOPA 3B0HA 2GEPA 3VKRA 2Y0FA 3OR2B 7GEPA 4S3BA 3VKQA 3MM6B 1ZJ9A 3GEOA 3MMBA 3MM9B 3OR1B 4G38A 4G39A 3VLZA 4S23A 4HTRA 5GEPA 4G9PA 4S3EA 3VKPA 4AOPA 3B0LA 4S39A 3B0JA 3MM7B 3VM0A 2V4JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MMC B;  2AKJ A;  4S38 A;  1ZJ8 A;  3MM6 A;  3MMA B;  3MMA A;  3AOP A;  3OR2 A;  5AOP A;  3MM8 B;  4GEP A;  3VKT A;  3MM5 A;  3VKS A;  3NOY A;  3B0M A;  3MM5 B;  3MM7 A;  3VLX A;  3VM1 A;  3MM8 A;  3OR1 A;  3VLY A;  4S3F A;  2XSJ A;  4S3C A;  3B0G A;  8GEP A;  3MMB B;  3B0N A;  2XSJ B;  3MM9 A;  3MMC A;  1AOP A;  2V4J A;  6GEP A;  4S3A A;  4S3D A;  2AOP A;  3B0H A;  2GEP A;  3VKR A;  2Y0F A;  3OR2 B;  7GEP A;  4S3B A;  3VKQ A;  3MM6 B;  1ZJ9 A;  3GEO A;  3MMB A;  3MM9 B;  3OR1 B;  4G38 A;  4G39 A;  3VLZ A;  4S23 A;  4HTR A;  5GEP A;  4G9P A;  4S3E A;  3VKP A;  4AOP A;  3B0L A;  4S39 A;  3B0J A;  3MM7 B;  3VM0 A;  2V4J B; 
#chains in the Genus database with same CATH topology
 3MMC B;  2AKJ A;  4S38 A;  1ZJ8 A;  3MM6 A;  3MMA B;  3MMA A;  3AOP A;  3OR2 A;  5AOP A;  3MM8 B;  4GEP A;  3VKT A;  3MM5 A;  3VKS A;  3NOY A;  3B0M A;  3MM5 B;  3MM7 A;  3VLX A;  3VM1 A;  3MM8 A;  3OR1 A;  3VLY A;  4S3F A;  2XSJ A;  4S3C A;  3B0G A;  8GEP A;  3MMB B;  3B0N A;  2XSJ B;  3MM9 A;  3MMC A;  1AOP A;  2V4J A;  6GEP A;  4S3A A;  4S3D A;  2AOP A;  3B0H A;  2GEP A;  3VKR A;  2Y0F A;  3OR2 B;  7GEP A;  4S3B A;  3VKQ A;  3MM6 B;  1ZJ9 A;  3GEO A;  3MMB A;  3MM9 B;  3OR1 B;  4G38 A;  4G39 A;  3VLZ A;  4S23 A;  4HTR A;  5GEP A;  4G9P A;  4S3E A;  3VKP A;  4AOP A;  3B0L A;  4S39 A;  3B0J A;  3MM7 B;  3VM0 A;  2V4J B; 
#chains in the Genus database with same CATH homology
 3MMC B;  2AKJ A;  4S38 A;  1ZJ8 A;  3MM6 A;  3MMA B;  3MMA A;  3AOP A;  3OR2 A;  5AOP A;  3MM8 B;  4GEP A;  3VKT A;  3MM5 A;  3VKS A;  3NOY A;  3B0M A;  3MM5 B;  3MM7 A;  3VLX A;  3VM1 A;  3MM8 A;  3OR1 A;  3VLY A;  4S3F A;  2XSJ A;  4S3C A;  3B0G A;  8GEP A;  3MMB B;  3B0N A;  2XSJ B;  3MM9 A;  3MMC A;  1AOP A;  2V4J A;  6GEP A;  4S3A A;  4S3D A;  2AOP A;  3B0H A;  2GEP A;  3VKR A;  2Y0F A;  3OR2 B;  7GEP A;  4S3B A;  3VKQ A;  3MM6 B;  1ZJ9 A;  3GEO A;  3MMB A;  3MM9 B;  3OR1 B;  4G38 A;  4G39 A;  3VLZ A;  4S23 A;  4HTR A;  5GEP A;  4G9P A;  4S3E A;  3VKP A;  4AOP A;  3B0L A;  4S39 A;  3B0J A;  3MM7 B;  3VM0 A;  2V4J B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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