3VLYA

Assimilatory nitrite reductase (nii3) - n226k mutant - so3 partial complex from tobacco leaf
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
538
structure length
538
Chain Sequence
VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
molecule keywords Nitrite reductase
total genus 190
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlyA01
5GEPA 3VKPA 3MM6B 3VKSA 4S3EA 3MM8A 4S39A 2V4JA 3MMBA 1ZJ8A 3VM1A 3AOPA 3MMAB 4S3BA 3B0LA 2GEPA 3VLXA 3MM5A 3MMCA 3OR2B 4S23A 3VKTA 3OR1A 7GEPA 3B0MA 4S38A 3OR1B 4G9PA 4S3DA 1AOPA 3OR2A 3MM5B 3MMCB 3VLZA 3VKRA 2AOPA 3MMAA 4S3CA 3B0NA 4S3AA 2V4JB 3B0HA 3MMBB 4GEPA 4S3FA 8GEPA 4AOPA 2AKJA 3GEOA 3MM6A 3MM8B 3MM9A 4G39A 3VKQA 3MM7A 4HTRA 3VM0A 4G38A 3VLYA 1ZJ9A 3NOYA 3B0JA 2XSJA 2XSJB 6GEPA 5AOPA 3MM7B 2Y0FA 3B0GA 3MM9B
chains in the Genus database with same CATH superfamily
5GEPA 3VKPA 3MM6B 3VKSA 4S3EA 3MM8A 4S39A 2V4JA 3MMBA 1ZJ8A 3VM1A 3AOPA 3MMAB 4S3BA 3B0LA 2GEPA 3VLXA 3MM5A 3MMCA 3OR2B 4S23A 3VKTA 3OR1A 7GEPA 3B0MA 4S38A 3OR1B 4G9PA 4S3DA 1AOPA 3OR2A 3MM5B 3MMCB 3VLZA 3VKRA 2AOPA 3MMAA 4S3CA 3B0NA 4S3AA 2V4JB 3B0HA 3MMBB 4GEPA 4S3FA 8GEPA 4AOPA 2AKJA 3GEOA 3MM6A 3MM8B 3MM9A 4G39A 3VKQA 3MM7A 4HTRA 3VM0A 4G38A 3VLYA 1ZJ9A 3NOYA 3B0JA 2XSJA 2XSJB 6GEPA 5AOPA 3MM7B 2Y0FA 3B0GA 3MM9B
chains in the Genus database with same CATH topology
5GEPA 3VKPA 3MM6B 3VKSA 4S3EA 3MM8A 4S39A 2V4JA 3MMBA 1ZJ8A 3VM1A 3AOPA 3MMAB 4S3BA 3B0LA 2GEPA 3VLXA 3MM5A 3MMCA 3OR2B 4S23A 3VKTA 3OR1A 7GEPA 3B0MA 4S38A 3OR1B 4G9PA 4S3DA 1AOPA 3OR2A 3MM5B 3MMCB 3VLZA 3VKRA 2AOPA 3MMAA 4S3CA 3B0NA 4S3AA 2V4JB 3B0HA 3MMBB 4GEPA 4S3FA 8GEPA 4AOPA 2AKJA 3GEOA 3MM6A 3MM8B 3MM9A 4G39A 3VKQA 3MM7A 4HTRA 3VM0A 4G38A 3VLYA 1ZJ9A 3NOYA 3B0JA 2XSJA 2XSJB 6GEPA 5AOPA 3MM7B 2Y0FA 3B0GA 3MM9B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GEP A;  3VKP A;  3MM6 B;  3VKS A;  4S3E A;  3MM8 A;  4S39 A;  2V4J A;  3MMB A;  1ZJ8 A;  3VM1 A;  3AOP A;  3MMA B;  4S3B A;  3B0L A;  2GEP A;  3VLX A;  3MM5 A;  3MMC A;  3OR2 B;  4S23 A;  3VKT A;  3OR1 A;  7GEP A;  3B0M A;  4S38 A;  3OR1 B;  4G9P A;  4S3D A;  1AOP A;  3OR2 A;  3MM5 B;  3MMC B;  3VLZ A;  3VKR A;  2AOP A;  3MMA A;  4S3C A;  3B0N A;  4S3A A;  2V4J B;  3B0H A;  3MMB B;  4GEP A;  4S3F A;  8GEP A;  4AOP A;  2AKJ A;  3GEO A;  3MM6 A;  3MM8 B;  3MM9 A;  4G39 A;  3VKQ A;  3MM7 A;  4HTR A;  3VM0 A;  4G38 A;  3VLY A;  1ZJ9 A;  3NOY A;  3B0J A;  2XSJ A;  2XSJ B;  6GEP A;  5AOP A;  3MM7 B;  2Y0F A;  3B0G A;  3MM9 B; 
#chains in the Genus database with same CATH topology
 5GEP A;  3VKP A;  3MM6 B;  3VKS A;  4S3E A;  3MM8 A;  4S39 A;  2V4J A;  3MMB A;  1ZJ8 A;  3VM1 A;  3AOP A;  3MMA B;  4S3B A;  3B0L A;  2GEP A;  3VLX A;  3MM5 A;  3MMC A;  3OR2 B;  4S23 A;  3VKT A;  3OR1 A;  7GEP A;  3B0M A;  4S38 A;  3OR1 B;  4G9P A;  4S3D A;  1AOP A;  3OR2 A;  3MM5 B;  3MMC B;  3VLZ A;  3VKR A;  2AOP A;  3MMA A;  4S3C A;  3B0N A;  4S3A A;  2V4J B;  3B0H A;  3MMB B;  4GEP A;  4S3F A;  8GEP A;  4AOP A;  2AKJ A;  3GEO A;  3MM6 A;  3MM8 B;  3MM9 A;  4G39 A;  3VKQ A;  3MM7 A;  4HTR A;  3VM0 A;  4G38 A;  3VLY A;  1ZJ9 A;  3NOY A;  3B0J A;  2XSJ A;  2XSJ B;  6GEP A;  5AOP A;  3MM7 B;  2Y0F A;  3B0G A;  3MM9 B; 
#chains in the Genus database with same CATH homology
 5GEP A;  3VKP A;  3MM6 B;  3VKS A;  4S3E A;  3MM8 A;  4S39 A;  2V4J A;  3MMB A;  1ZJ8 A;  3VM1 A;  3AOP A;  3MMA B;  4S3B A;  3B0L A;  2GEP A;  3VLX A;  3MM5 A;  3MMC A;  3OR2 B;  4S23 A;  3VKT A;  3OR1 A;  7GEP A;  3B0M A;  4S38 A;  3OR1 B;  4G9P A;  4S3D A;  1AOP A;  3OR2 A;  3MM5 B;  3MMC B;  3VLZ A;  3VKR A;  2AOP A;  3MMA A;  4S3C A;  3B0N A;  4S3A A;  2V4J B;  3B0H A;  3MMB B;  4GEP A;  4S3F A;  8GEP A;  4AOP A;  2AKJ A;  3GEO A;  3MM6 A;  3MM8 B;  3MM9 A;  4G39 A;  3VKQ A;  3MM7 A;  4HTR A;  3VM0 A;  4G38 A;  3VLY A;  1ZJ9 A;  3NOY A;  3B0J A;  2XSJ A;  2XSJ B;  6GEP A;  5AOP A;  3MM7 B;  2Y0F A;  3B0G A;  3MM9 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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