3VLYA

Assimilatory nitrite reductase (nii3) - n226k mutant - so3 partial complex from tobacco leaf
Total Genus 190
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
190
sequence length
538
structure length
538
Chain Sequence
b'VAAERLEPRVEEKDGYWILKEQFRKGINPQEKVKIEKEPMKLFMENGIEELAKIPIEEIDQSKLTKDDIDVRLKWLGLFHRRKNQYGRFMMRLKLPNGVTTSAQTRYLASVIRKYGKEGCADITTRQNWQIRGVVLPDVPEILKGLAEVGLTSLQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWKPCVVGSHDLYEHPHINDLAYMPATKDGRFGFNLLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGFRGNRQKCRMMWLIDELGVEGFRAEVEKRMPQQQLERASPEDLVQKQWERRDYLGVHPQKQEGYSFIGLHIPVGRVQADDMDELARLADEYGSGEIRLTVEQNIIIPNIETSKIEALLKEPVLSTFSPDPPILMKGLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCPNTCAQVQVADIGFMGCLTRDKNGKTVEGADVFLGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGAVPR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Nitrite reductase
publication title X-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity
pubmed doi rcsb
source organism Nicotiana tabacum
molecule tags Oxidoreductase
total genus 190
structure length 538
sequence length 538
ec nomenclature ec 1.7.7.1: Ferredoxin--nitrite reductase.
pdb deposition date 2011-12-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01077 NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain
A PF03460 NIR_SIR_ferr Nitrite/Sulfite reductase ferredoxin-like half domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA02
3.30.413.10 Alpha Beta 2-Layer Sandwich Sulfite Reductase Hemoprotein; domain 1 Sulfite Reductase Hemoprotein, domain 1 3vlyA03
3.90.480.20 Alpha Beta Alpha-Beta Complex Sulfite Reductase Hemoprotein; domain 2 Sulfite Reductase Hemoprotein; domain 2 3vlyA01
2AKJA 3B0HA 3MMCB 4S3AA 2GEPA 4S39A 4HTRA 3VKRA 3MMBA 3B0JA 3MMAA 3MM6A 3NOYA 4GEPA 1ZJ8A 3VKQA 4AOPA 3B0LA 3MMCA 3MM8B 3VKTA 4S3BA 3VM1A 5GEPA 3B0NA 3OR2B 8GEPA 4S23A 5AOPA 4S3FA 3B0MA 3MM5B 3VLYA 3MM7B 3MM8A 3B0GA 3OR2A 4S3EA 3MM9B 2V4JB 3MM5A 6GEPA 3MM7A 3AOPA 3OR1B 2XSJB 3VM0A 4S3CA 3MM9A 2V4JA 2Y0FA 3VKSA 3OR1A 4S38A 2XSJA 1AOPA 4S3DA 7GEPA 4G38A 1ZJ9A 3GEOA 3VLXA 3MMBB 3MMAB 3VLZA 4G39A 4G9PA 3VKPA 2AOPA 3MM6B
chains in the Genus database with same CATH superfamily
2AKJA 3B0HA 3MMCB 4S3AA 2GEPA 4S39A 4HTRA 3VKRA 3MMBA 3B0JA 3MMAA 3MM6A 3NOYA 4GEPA 1ZJ8A 3VKQA 4AOPA 3B0LA 3MMCA 3MM8B 3VKTA 4S3BA 3VM1A 5GEPA 3B0NA 3OR2B 8GEPA 4S23A 5AOPA 4S3FA 3B0MA 3MM5B 3VLYA 3MM7B 3MM8A 3B0GA 3OR2A 4S3EA 3MM9B 2V4JB 3MM5A 6GEPA 3MM7A 3AOPA 3OR1B 2XSJB 3VM0A 4S3CA 3MM9A 2V4JA 2Y0FA 3VKSA 3OR1A 4S38A 2XSJA 1AOPA 4S3DA 7GEPA 4G38A 1ZJ9A 3GEOA 3VLXA 3MMBB 3MMAB 3VLZA 4G39A 4G9PA 3VKPA 2AOPA 3MM6B
chains in the Genus database with same CATH topology
2AKJA 3B0HA 3MMCB 4S3AA 2GEPA 4S39A 4HTRA 3VKRA 3MMBA 3B0JA 3MMAA 3MM6A 3NOYA 4GEPA 1ZJ8A 3VKQA 4AOPA 3B0LA 3MMCA 3MM8B 3VKTA 4S3BA 3VM1A 5GEPA 3B0NA 3OR2B 8GEPA 4S23A 5AOPA 4S3FA 3B0MA 3MM5B 3VLYA 3MM7B 3MM8A 3B0GA 3OR2A 4S3EA 3MM9B 2V4JB 3MM5A 6GEPA 3MM7A 3AOPA 3OR1B 2XSJB 3VM0A 4S3CA 3MM9A 2V4JA 2Y0FA 3VKSA 3OR1A 4S38A 2XSJA 1AOPA 4S3DA 7GEPA 4G38A 1ZJ9A 3GEOA 3VLXA 3MMBB 3MMAB 3VLZA 4G39A 4G9PA 3VKPA 2AOPA 3MM6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AKJ A;  3B0H A;  3MMC B;  4S3A A;  2GEP A;  4S39 A;  4HTR A;  3VKR A;  3MMB A;  3B0J A;  3MMA A;  3MM6 A;  3NOY A;  4GEP A;  1ZJ8 A;  3VKQ A;  4AOP A;  3B0L A;  3MMC A;  3MM8 B;  3VKT A;  4S3B A;  3VM1 A;  5GEP A;  3B0N A;  3OR2 B;  8GEP A;  4S23 A;  5AOP A;  4S3F A;  3B0M A;  3MM5 B;  3VLY A;  3MM7 B;  3MM8 A;  3B0G A;  3OR2 A;  4S3E A;  3MM9 B;  2V4J B;  3MM5 A;  6GEP A;  3MM7 A;  3AOP A;  3OR1 B;  2XSJ B;  3VM0 A;  4S3C A;  3MM9 A;  2V4J A;  2Y0F A;  3VKS A;  3OR1 A;  4S38 A;  2XSJ A;  1AOP A;  4S3D A;  7GEP A;  4G38 A;  1ZJ9 A;  3GEO A;  3VLX A;  3MMB B;  3MMA B;  3VLZ A;  4G39 A;  4G9P A;  3VKP A;  2AOP A;  3MM6 B; 
#chains in the Genus database with same CATH topology
 2AKJ A;  3B0H A;  3MMC B;  4S3A A;  2GEP A;  4S39 A;  4HTR A;  3VKR A;  3MMB A;  3B0J A;  3MMA A;  3MM6 A;  3NOY A;  4GEP A;  1ZJ8 A;  3VKQ A;  4AOP A;  3B0L A;  3MMC A;  3MM8 B;  3VKT A;  4S3B A;  3VM1 A;  5GEP A;  3B0N A;  3OR2 B;  8GEP A;  4S23 A;  5AOP A;  4S3F A;  3B0M A;  3MM5 B;  3VLY A;  3MM7 B;  3MM8 A;  3B0G A;  3OR2 A;  4S3E A;  3MM9 B;  2V4J B;  3MM5 A;  6GEP A;  3MM7 A;  3AOP A;  3OR1 B;  2XSJ B;  3VM0 A;  4S3C A;  3MM9 A;  2V4J A;  2Y0F A;  3VKS A;  3OR1 A;  4S38 A;  2XSJ A;  1AOP A;  4S3D A;  7GEP A;  4G38 A;  1ZJ9 A;  3GEO A;  3VLX A;  3MMB B;  3MMA B;  3VLZ A;  4G39 A;  4G9P A;  3VKP A;  2AOP A;  3MM6 B; 
#chains in the Genus database with same CATH homology
 2AKJ A;  3B0H A;  3MMC B;  4S3A A;  2GEP A;  4S39 A;  4HTR A;  3VKR A;  3MMB A;  3B0J A;  3MMA A;  3MM6 A;  3NOY A;  4GEP A;  1ZJ8 A;  3VKQ A;  4AOP A;  3B0L A;  3MMC A;  3MM8 B;  3VKT A;  4S3B A;  3VM1 A;  5GEP A;  3B0N A;  3OR2 B;  8GEP A;  4S23 A;  5AOP A;  4S3F A;  3B0M A;  3MM5 B;  3VLY A;  3MM7 B;  3MM8 A;  3B0G A;  3OR2 A;  4S3E A;  3MM9 B;  2V4J B;  3MM5 A;  6GEP A;  3MM7 A;  3AOP A;  3OR1 B;  2XSJ B;  3VM0 A;  4S3C A;  3MM9 A;  2V4J A;  2Y0F A;  3VKS A;  3OR1 A;  4S38 A;  2XSJ A;  1AOP A;  4S3D A;  7GEP A;  4G38 A;  1ZJ9 A;  3GEO A;  3VLX A;  3MMB B;  3MMA B;  3VLZ A;  4G39 A;  4G9P A;  3VKP A;  2AOP A;  3MM6 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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