2W9RA

Structural basis of n-end rule substrate recognition in escherichia coli by the clpap adaptor protein clps
Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
97
structure length
97
Chain Sequence
QLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKAGA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH4 (78-95)TIV1 (20-23)EMPTYAH2 (40-51)TIV2 (35-38)AH3 (55-68)S1 (27-33)S2 (70-77)AH1 (13-20)Updating...
connected with : NaN
molecule tags Chaperone
source organism Escherichia coli
publication title Structural Basis of N-End Rule Substrate Recognition in Escherichia Coli by the Clpap Adaptor Protein Clps.
pubmed doi rcsb
molecule keywords ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS
total genus 27
structure length 97
sequence length 97
ec nomenclature
pdb deposition date 2009-01-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 2w9rA00
1MG9A 3O2HA 1R6QC 3O1FA 3O2BA 3DNJA 3GW1A 4YKAA 2WA9A 1RQSA 3G3PA 1R6OC 3G1BA 1CTFA 4YJXA 3O1FB 1MBVB 3O2OA 1MBXC 1DD4A 1DD3A 3GQ1A 1RQUA 2W9RA 1LZWA 1MBUC 3GQ0A 3G19A 1RQVA 4YJMA 2WA8A
chains in the Genus database with same CATH superfamily
3O2HA 1R6QC 1KD1X 4IO9W 1KQSV 3I56W 1Q81X 2ZJQW 3CCUW 3CC4W 3DLLW 4WF9W 1N8RX 3OW2V 1M1KX 1YIJW 4WCEW 3G3PA 4BL2A 4CPKA 3CCQW 3W7WA 3G1BA 5GW7A 1VQ7W 3O1FB 1S72W 1MBVB 3G4SW 1YITW 3I55W 1MBXC 3GQ1A 3CCJW 1YJNW 1LZWA 3GQ0A 3D3IA 4WFNW 3G19A 5M1AA 3CF5W 1RQVA 4YJMA 3J7ZZ 1Q82X 1MG9A 4UY8Z 5GADa 1MWSA 1MWRA 1MWTA 5M19A 3O2BA 3GW1A 1MWUA 2WA9A 5HL7W 1VQNW 3G6EW 1KC8X 3ZG5A 1VQPW 4CJNA 1K9MX 1YI2W 1R6OC 5JVHW 3W7SA 4YJXA 5CA3A 1Q7YX 4IOAW 2QA4W 3CC2W 1VQ8W 3W7UA 1VQ4W 3PIPW 3PIOW 1BXYA 1DD3A 1MBUC 5GAGa 3G71W 5M18A 5JVGW 1YJ9W 3W7XA 1VQLW 2OTLW 5DM7W 3CCVW 3ZFZA 3W7TA 3O1FA 5GAHa 1VQ9W 2ZJRW 4IOCW 1Q86X 1VQKW 3CXCV 3CCEW 1CTFA 1YJWW 4DKIA 5GAEa 2QEXW 4WFAW 1VQ6W 3ZG0A 3CCSW 4BL3A 3O2OA 3CCRW 1K8AX 3CPWV 1NJIX 2WA8A 3CCLW 5DM6W 3DNJA 4YKAA 3CD6W 1QVGV 1YHQW 1K73X 1VQMW 1RQSA 2OTJW 1QVFV 1M90X 1VQ5W 3CMAW 4U67W 3CMEW 1VQQA 3CC7W 1JJ2V 4WFBW 1DD4A 2ZJPW 1RQUA 2W9RA 3CCMW 1W2BV 1VQOW
chains in the Genus database with same CATH topology
1MG9A 3O2HA 1R6QC 3O1FA 3O2BA 3DNJA 3GW1A 4YKAA 2WA9A 1RQSA 3G3PA 1R6OC 3G1BA 1CTFA 4YJXA 3O1FB 1MBVB 3O2OA 1MBXC 1DD4A 1DD3A 3GQ1A 1RQUA 2W9RA 1LZWA 1MBUC 3GQ0A 3G19A 1RQVA 4YJMA 2WA8A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1MG9 A;  3O2H A;  1R6Q C;  3O1F A;  3O2B A;  3DNJ A;  3GW1 A;  4YKA A;  2WA9 A;  1RQS A;  3G3P A;  1R6O C;  3G1B A;  1CTF A;  4YJX A;  3O1F B;  1MBV B;  3O2O A;  1MBX C;  1DD4 A;  1DD3 A;  3GQ1 A;  1RQU A;  2W9R A;  1LZW A;  1MBU C;  3GQ0 A;  3G19 A;  1RQV A;  4YJM A;  2WA8 A; 
#chains in the Genus database with same CATH topology
 3O2H A;  1R6Q C;  1KD1 X;  4IO9 W;  1KQS V;  3I56 W;  1Q81 X;  2ZJQ W;  3CCU W;  3CC4 W;  3DLL W;  4WF9 W;  1N8R X;  3OW2 V;  1M1K X;  1YIJ W;  4WCE W;  3G3P A;  4BL2 A;  4CPK A;  3CCQ W;  3W7W A;  3G1B A;  5GW7 A;  1VQ7 W;  3O1F B;  1S72 W;  1MBV B;  3G4S W;  1YIT W;  3I55 W;  1MBX C;  3GQ1 A;  3CCJ W;  1YJN W;  1LZW A;  3GQ0 A;  3D3I A;  4WFN W;  3G19 A;  5M1A A;  3CF5 W;  1RQV A;  4YJM A;  3J7Z Z;  1Q82 X;  1MG9 A;  4UY8 Z;  5GAD a;  1MWS A;  1MWR A;  1MWT A;  5M19 A;  3O2B A;  3GW1 A;  1MWU A;  2WA9 A;  5HL7 W;  1VQN W;  3G6E W;  1KC8 X;  3ZG5 A;  1VQP W;  4CJN A;  1K9M X;  1YI2 W;  1R6O C;  5JVH W;  3W7S A;  4YJX A;  5CA3 A;  1Q7Y X;  4IOA W;  2QA4 W;  3CC2 W;  1VQ8 W;  3W7U A;  1VQ4 W;  3PIP W;  3PIO W;  1BXY A;  1DD3 A;  1MBU C;  5GAG a;  3G71 W;  5M18 A;  5JVG W;  1YJ9 W;  3W7X A;  1VQL W;  2OTL W;  5DM7 W;  3CCV W;  3ZFZ A;  3W7T A;  3O1F A;  5GAH a;  1VQ9 W;  2ZJR W;  4IOC W;  1Q86 X;  1VQK W;  3CXC V;  3CCE W;  1CTF A;  1YJW W;  4DKI A;  5GAE a;  2QEX W;  4WFA W;  1VQ6 W;  3ZG0 A;  3CCS W;  4BL3 A;  3O2O A;  3CCR W;  1K8A X;  3CPW V;  1NJI X;  2WA8 A;  3CCL W;  5DM6 W;  3DNJ A;  4YKA A;  3CD6 W;  1QVG V;  1YHQ W;  1K73 X;  1VQM W;  1RQS A;  2OTJ W;  1QVF V;  1M90 X;  1VQ5 W;  3CMA W;  4U67 W;  3CME W;  1VQQ A;  3CC7 W;  1JJ2 V;  4WFB W;  1DD4 A;  2ZJP W;  1RQU A;  2W9R A;  3CCM W;  1W2B V;  1VQO W; 
#chains in the Genus database with same CATH homology
 1MG9 A;  3O2H A;  1R6Q C;  3O1F A;  3O2B A;  3DNJ A;  3GW1 A;  4YKA A;  2WA9 A;  1RQS A;  3G3P A;  1R6O C;  3G1B A;  1CTF A;  4YJX A;  3O1F B;  1MBV B;  3O2O A;  1MBX C;  1DD4 A;  1DD3 A;  3GQ1 A;  1RQU A;  2W9R A;  1LZW A;  1MBU C;  3GQ0 A;  3G19 A;  1RQV A;  4YJM A;  2WA8 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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