2ZJPW

Thiopeptide antibiotic nosiheptide bound to the large ribosomal subunit of deinococcus radiodurans
Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
55
structure length
55
Chain Sequence
MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
S1 (2-5)TII2 (27-30)EMPTYTII1 (9-12)S2 (30-33)3H1 (48-50)AH2 (38-47)AH1 (14-23)Updating...
connected with : NaN
molecule tags Ribosome/antibiotic
publication title Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
pubmed doi rcsb
molecule keywords 50S RIBOSOMAL PROTEIN L33
total genus 13
structure length 55
sequence length 55
ec nomenclature
pdb deposition date 2008-03-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
W PF00327 Ribosomal_L30 Ribosomal protein L30p/L7e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal protein L30, ferredoxin-like fold domain 2zjpW00
3PIPW 3CCMW 5JVGW 3I56W 4WF9W 1K73X 5HL7W 1S72W 1KC8X 3OW2V 1VQNW 2ZJPW 4IOAW 3CPWV 3DLLW 2OTLW 1VQOW 3CMEW 1VQ6W 1VQPW 1VQ5W 1QVGV 1YJ9W 1YIJW 1YITW 1VQ7W 3J7ZZ 1YI2W 3CCJW 3CC7W 1YJNW 1KD1X 3CCSW 1VQMW 3CCLW 3CF5W 3G6EW 1W2BV 1VQ9W 5GAEa 3PIOW 1BXYA 1K8AX 1YJWW 3CCVW 2ZJRW 1N8RX 2QEXW 3CCEW 4WFBW 1Q82X 1NJIX 2QA4W 4U67W 5GAHa 5GAGa 4IOCW 1VQKW 4WFNW 3CC2W 5DM6W 3CCRW 3G71W 3CCQW 1Q7YX 1VQLW 1KQSV 1Q86X 3I55W 1QVFV 1M90X 4UY8Z 1YHQW 5DM7W 4WCEW 3CD6W 1JJ2V 2ZJQW 3CMAW 1VQ8W 1M1KX 2OTJW 3CC4W 1VQ4W 1Q81X 1K9MX 3G4SW 5JVHW 4WFAW 3CXCV 4IO9W 3CCUW 5GADa
chains in the Genus database with same CATH superfamily
4YKAA 3PIPW 3CCMW 5JVGW 3GQ0A 1R6OC 1RQUA 3I56W 4YJXA 4WF9W 1K73X 5HL7W 1S72W 1KC8X 1DD3A 3OW2V 1VQNW 2ZJPW 5M19A 1R6QC 4IOAW 3CPWV 3ZG5A 3ZG0A 3DLLW 5M1AA 2OTLW 1VQOW 3W7TA 2WA8A 3CMEW 1MWTA 1VQ6W 1VQPW 1VQ5W 1VQQA 3W7WA 1QVGV 1YJ9W 3DNJA 1YIJW 5M18A 1YITW 1VQ7W 1CTFA 4BL3A 4CPKA 3J7ZZ 1YI2W 3CCJW 1MWUA 1DD4A 3O2BA 3CC7W 5GW7A 1YJNW 3G3PA 2W9RA 3CCSW 1VQMW 1KD1X 3CCLW 3CF5W 3G6EW 1W2BV 4YJMA 1VQ9W 5GAEa 3PIOW 1BXYA 5CA3A 1LZWA 1YJWW 1K8AX 1MG9A 3CCVW 2ZJRW 1N8RX 2QEXW 4CJNA 3CCEW 3G1BA 1MWRA 4WFBW 1MWSA 3G19A 1Q82X 1NJIX 2QA4W 3W7XA 4U67W 5GAHa 1MBUC 3O1FB 5GAGa 3GW1A 4IOCW 1VQKW 3O2OA 4WFNW 3CC2W 5DM6W 3CCRW 3G71W 3CCQW 1Q7YX 1MBVB 1VQLW 1KQSV 1Q86X 2WA9A 3I55W 3D3IA 1QVFV 1M90X 4UY8Z 1RQVA 4DKIA 1YHQW 5DM7W 4WCEW 3CD6W 1JJ2V 2ZJQW 1RQSA 3CMAW 3O1FA 3W7UA 1VQ8W 1M1KX 2OTJW 3ZFZA 3CC4W 3W7SA 1VQ4W 1Q81X 1MBXC 4BL2A 3GQ1A 3G4SW 5JVHW 1K9MX 4WFAW 3CXCV 4IO9W 3O2HA 3CCUW 5GADa
chains in the Genus database with same CATH topology
3PIPW 3CCMW 5JVGW 3I56W 4WF9W 1K73X 5HL7W 1S72W 1KC8X 3OW2V 1VQNW 2ZJPW 4IOAW 3CPWV 3DLLW 2OTLW 1VQOW 3CMEW 1VQ6W 1VQPW 1VQ5W 1QVGV 1YJ9W 1YIJW 1YITW 1VQ7W 3J7ZZ 1YI2W 3CCJW 3CC7W 1YJNW 1KD1X 3CCSW 1VQMW 3CCLW 3CF5W 3G6EW 1W2BV 1VQ9W 5GAEa 3PIOW 1BXYA 1K8AX 1YJWW 3CCVW 2ZJRW 1N8RX 2QEXW 3CCEW 4WFBW 1Q82X 1NJIX 2QA4W 4U67W 5GAHa 5GAGa 4IOCW 1VQKW 4WFNW 3CC2W 5DM6W 3CCRW 3G71W 3CCQW 1Q7YX 1VQLW 1KQSV 1Q86X 3I55W 1QVFV 1M90X 4UY8Z 1YHQW 5DM7W 4WCEW 3CD6W 1JJ2V 2ZJQW 3CMAW 1VQ8W 1M1KX 2OTJW 3CC4W 1VQ4W 1Q81X 1K9MX 3G4SW 5JVHW 4WFAW 3CXCV 4IO9W 3CCUW 5GADa
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3PIP W;  3CCM W;  5JVG W;  3I56 W;  4WF9 W;  1K73 X;  5HL7 W;  1S72 W;  1KC8 X;  3OW2 V;  1VQN W;  2ZJP W;  4IOA W;  3CPW V;  3DLL W;  2OTL W;  1VQO W;  3CME W;  1VQ6 W;  1VQP W;  1VQ5 W;  1QVG V;  1YJ9 W;  1YIJ W;  1YIT W;  1VQ7 W;  3J7Z Z;  1YI2 W;  3CCJ W;  3CC7 W;  1YJN W;  1KD1 X;  3CCS W;  1VQM W;  3CCL W;  3CF5 W;  3G6E W;  1W2B V;  1VQ9 W;  5GAE a;  3PIO W;  1BXY A;  1K8A X;  1YJW W;  3CCV W;  2ZJR W;  1N8R X;  2QEX W;  3CCE W;  4WFB W;  1Q82 X;  1NJI X;  2QA4 W;  4U67 W;  5GAH a;  5GAG a;  4IOC W;  1VQK W;  4WFN W;  3CC2 W;  5DM6 W;  3CCR W;  3G71 W;  3CCQ W;  1Q7Y X;  1VQL W;  1KQS V;  1Q86 X;  3I55 W;  1QVF V;  1M90 X;  4UY8 Z;  1YHQ W;  5DM7 W;  4WCE W;  3CD6 W;  1JJ2 V;  2ZJQ W;  3CMA W;  1VQ8 W;  1M1K X;  2OTJ W;  3CC4 W;  1VQ4 W;  1Q81 X;  1K9M X;  3G4S W;  5JVH W;  4WFA W;  3CXC V;  4IO9 W;  3CCU W;  5GAD a; 
#chains in the Genus database with same CATH topology
 4YKA A;  3PIP W;  3CCM W;  5JVG W;  3GQ0 A;  1R6O C;  1RQU A;  3I56 W;  4YJX A;  4WF9 W;  1K73 X;  5HL7 W;  1S72 W;  1KC8 X;  1DD3 A;  3OW2 V;  1VQN W;  2ZJP W;  5M19 A;  1R6Q C;  4IOA W;  3CPW V;  3ZG5 A;  3ZG0 A;  3DLL W;  5M1A A;  2OTL W;  1VQO W;  3W7T A;  2WA8 A;  3CME W;  1MWT A;  1VQ6 W;  1VQP W;  1VQ5 W;  1VQQ A;  3W7W A;  1QVG V;  1YJ9 W;  3DNJ A;  1YIJ W;  5M18 A;  1YIT W;  1VQ7 W;  1CTF A;  4BL3 A;  4CPK A;  3J7Z Z;  1YI2 W;  3CCJ W;  1MWU A;  1DD4 A;  3O2B A;  3CC7 W;  5GW7 A;  1YJN W;  3G3P A;  2W9R A;  3CCS W;  1VQM W;  1KD1 X;  3CCL W;  3CF5 W;  3G6E W;  1W2B V;  4YJM A;  1VQ9 W;  5GAE a;  3PIO W;  1BXY A;  5CA3 A;  1LZW A;  1YJW W;  1K8A X;  1MG9 A;  3CCV W;  2ZJR W;  1N8R X;  2QEX W;  4CJN A;  3CCE W;  3G1B A;  1MWR A;  4WFB W;  1MWS A;  3G19 A;  1Q82 X;  1NJI X;  2QA4 W;  3W7X A;  4U67 W;  5GAH a;  1MBU C;  3O1F B;  5GAG a;  3GW1 A;  4IOC W;  1VQK W;  3O2O A;  4WFN W;  3CC2 W;  5DM6 W;  3CCR W;  3G71 W;  3CCQ W;  1Q7Y X;  1MBV B;  1VQL W;  1KQS V;  1Q86 X;  2WA9 A;  3I55 W;  3D3I A;  1QVF V;  1M90 X;  4UY8 Z;  1RQV A;  4DKI A;  1YHQ W;  5DM7 W;  4WCE W;  3CD6 W;  1JJ2 V;  2ZJQ W;  1RQS A;  3CMA W;  3O1F A;  3W7U A;  1VQ8 W;  1M1K X;  2OTJ W;  3ZFZ A;  3CC4 W;  3W7S A;  1VQ4 W;  1Q81 X;  1MBX C;  4BL2 A;  3GQ1 A;  3G4S W;  5JVH W;  1K9M X;  4WFA W;  3CXC V;  4IO9 W;  3O2H A;  3CCU W;  5GAD a; 
#chains in the Genus database with same CATH homology
 3PIP W;  3CCM W;  5JVG W;  3I56 W;  4WF9 W;  1K73 X;  5HL7 W;  1S72 W;  1KC8 X;  3OW2 V;  1VQN W;  2ZJP W;  4IOA W;  3CPW V;  3DLL W;  2OTL W;  1VQO W;  3CME W;  1VQ6 W;  1VQP W;  1VQ5 W;  1QVG V;  1YJ9 W;  1YIJ W;  1YIT W;  1VQ7 W;  3J7Z Z;  1YI2 W;  3CCJ W;  3CC7 W;  1YJN W;  1KD1 X;  3CCS W;  1VQM W;  3CCL W;  3CF5 W;  3G6E W;  1W2B V;  1VQ9 W;  5GAE a;  3PIO W;  1BXY A;  1K8A X;  1YJW W;  3CCV W;  2ZJR W;  1N8R X;  2QEX W;  3CCE W;  4WFB W;  1Q82 X;  1NJI X;  2QA4 W;  4U67 W;  5GAH a;  5GAG a;  4IOC W;  1VQK W;  4WFN W;  3CC2 W;  5DM6 W;  3CCR W;  3G71 W;  3CCQ W;  1Q7Y X;  1VQL W;  1KQS V;  1Q86 X;  3I55 W;  1QVF V;  1M90 X;  4UY8 Z;  1YHQ W;  5DM7 W;  4WCE W;  3CD6 W;  1JJ2 V;  2ZJQ W;  3CMA W;  1VQ8 W;  1M1K X;  2OTJ W;  3CC4 W;  1VQ4 W;  1Q81 X;  1K9M X;  3G4S W;  5JVH W;  4WFA W;  3CXC V;  4IO9 W;  3CCU W;  5GAD a;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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