2ZJR | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	55
structure length	55
Chain Sequence	MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__580204863155297__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__580204863155297__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/2ZJR/W/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__580204863155297__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"580204863155297","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/2ZJR/W/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__580204863155297__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Ribosome
publication title	Translational regulation via L11: molecular switches on the ribosome turned on and off by thiostrepton and micrococcin. pubmed doi rcsb
molecule keywords	ribosomal 23S RNA
total genus	13
structure length	55
sequence length	55
ec nomenclature
pdb deposition date	2008-03-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
W	PF00327	Ribosomal_L30	Ribosomal protein L30p/L7e

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1390.20	Alpha Beta	2-Layer Sandwich	Ribosomal Protein L30; Chain: A,	Ribosomal protein L30, ferredoxin-like fold domain	2zjrW00

3PIOW 1W2BV 2OTJW 4WFAW 1KQSV 3CCLW 4U67W 2ZJRW 1YITW 3CCUW 4IO9W 3J7ZZ 3CCRW 1KD1X 3CCMW 1VQOW 4WFNW 1VQ9W 3CCVW 1YHQW 3CC4W 1Q81X 3CCSW 3CF5W 4IOCW 5JVGW 1S72W 4WFBW 3CCQW 1JJ2V 1QVGV 1Q7YX 2ZJPW 1M1KX 5HL7W 5JVHW 1VQ5W 1VQMW 3CC2W 3I55W 1YJWW 5GAGa 3I56W 1M90X 2QA4W 5GADa 3CC7W 5GAEa 1VQ6W 3CD6W 5GAHa 4WF9W 1K73X 1YIJW 1K8AX 2QEXW 3CCEW 1KC8X 3CMEW 1YI2W 1YJ9W 1Q86X 1VQNW 1N8RX 3CPWV 5DM6W 4WCEW 1VQPW 1BXYA 1VQ7W 1VQ8W 1QVFV 2ZJQW 3CCJW 1VQKW 4UY8Z 1YJNW 3G6EW 1NJIX 3OW2V 1Q82X 1VQLW 5DM7W 3CXCV 1VQ4W 2OTLW 4IOAW 3DLLW 3G71W 3G4SW 3CMAW 1K9MX 3PIPW
chains in the Genus database with same CATH superfamily

1MWTA 3PIOW 4YJMA 1W2BV 1RQVA 3W7TA 2OTJW 4WFAW 3O2OA 1KQSV 3CCLW 4U67W 2ZJRW 3W7WA 1YITW 3CCUW 3D3IA 1VQQA 4IO9W 1MBVB 3GQ0A 3W7XA 3O1FB 3J7ZZ 3CCRW 1KD1X 3CCMW 1VQOW 4WFNW 1VQ9W 3CCVW 4DKIA 3CC4W 1YHQW 1Q81X 1MWSA 4YKAA 3CCSW 5M18A 3CF5W 5JVGW 4IOCW 1S72W 4WFBW 3CCQW 1JJ2V 3G1BA 1QVGV 1Q7YX 2ZJPW 3GW1A 1M1KX 3O1FA 5M19A 5CA3A 5HL7W 1RQSA 4BL2A 5JVHW 4CPKA 1VQ5W 2WA9A 1VQMW 4YJXA 3CC2W 5GW7A 3I55W 2W9RA 4BL3A 1YJWW 5GAGa 3I56W 1R6QC 1M90X 2QA4W 5GADa 1MWUA 3CC7W 5GAEa 1VQ6W 3CD6W 1R6OC 1DD4A 5GAHa 4WF9W 3W7SA 1K73X 3ZG0A 1YIJW 3G3PA 3GQ1A 1K8AX 2QEXW 3CCEW 1KC8X 3CMEW 1YI2W 1YJ9W 1Q86X 1VQNW 3O2BA 2WA8A 3G19A 3CPWV 1N8RX 5DM6W 3W7UA 4WCEW 1VQPW 1BXYA 1VQ7W 1VQ8W 1QVFV 2ZJQW 3CCJW 1VQKW 4UY8Z 1LZWA 3ZFZA 1YJNW 3G6EW 1MBXC 1MG9A 1NJIX 1MBUC 3OW2V 1Q82X 1DD3A 1VQLW 5DM7W 3CXCV 3O2HA 1VQ4W 2OTLW 4IOAW 5M1AA 3DNJA 1MWRA 3ZG5A 3DLLW 3G71W 3G4SW 3CMAW 1CTFA 1RQUA 4CJNA 1K9MX 3PIPW
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3PIO W;  1W2B V;  2OTJ W;  4WFA W;  1KQS V;  3CCL W;  4U67 W;  2ZJR W;  1YIT W;  3CCU W;  4IO9 W;  3J7Z Z;  3CCR W;  1KD1 X;  3CCM W;  1VQO W;  4WFN W;  1VQ9 W;  3CCV W;  1YHQ W;  3CC4 W;  1Q81 X;  3CCS W;  3CF5 W;  4IOC W;  5JVG W;  1S72 W;  4WFB W;  3CCQ W;  1JJ2 V;  1QVG V;  1Q7Y X;  2ZJP W;  1M1K X;  5HL7 W;  5JVH W;  1VQ5 W;  1VQM W;  3CC2 W;  3I55 W;  1YJW W;  5GAG a;  3I56 W;  1M90 X;  2QA4 W;  5GAD a;  3CC7 W;  5GAE a;  1VQ6 W;  3CD6 W;  5GAH a;  4WF9 W;  1K73 X;  1YIJ W;  1K8A X;  2QEX W;  3CCE W;  1KC8 X;  3CME W;  1YI2 W;  1YJ9 W;  1Q86 X;  1VQN W;  1N8R X;  3CPW V;  5DM6 W;  4WCE W;  1VQP W;  1BXY A;  1VQ7 W;  1VQ8 W;  1QVF V;  2ZJQ W;  3CCJ W;  1VQK W;  4UY8 Z;  1YJN W;  3G6E W;  1NJI X;  3OW2 V;  1Q82 X;  1VQL W;  5DM7 W;  3CXC V;  1VQ4 W;  2OTL W;  4IOA W;  3DLL W;  3G71 W;  3G4S W;  3CMA W;  1K9M X;  3PIP W; 
#chains in the Genus database with same CATH topology
 1MWT A;  3PIO W;  4YJM A;  1W2B V;  1RQV A;  3W7T A;  2OTJ W;  4WFA W;  3O2O A;  1KQS V;  3CCL W;  4U67 W;  2ZJR W;  3W7W A;  1YIT W;  3CCU W;  3D3I A;  1VQQ A;  4IO9 W;  1MBV B;  3GQ0 A;  3W7X A;  3O1F B;  3J7Z Z;  3CCR W;  1KD1 X;  3CCM W;  1VQO W;  4WFN W;  1VQ9 W;  3CCV W;  4DKI A;  3CC4 W;  1YHQ W;  1Q81 X;  1MWS A;  4YKA A;  3CCS W;  5M18 A;  3CF5 W;  5JVG W;  4IOC W;  1S72 W;  4WFB W;  3CCQ W;  1JJ2 V;  3G1B A;  1QVG V;  1Q7Y X;  2ZJP W;  3GW1 A;  1M1K X;  3O1F A;  5M19 A;  5CA3 A;  5HL7 W;  1RQS A;  4BL2 A;  5JVH W;  4CPK A;  1VQ5 W;  2WA9 A;  1VQM W;  4YJX A;  3CC2 W;  5GW7 A;  3I55 W;  2W9R A;  4BL3 A;  1YJW W;  5GAG a;  3I56 W;  1R6Q C;  1M90 X;  2QA4 W;  5GAD a;  1MWU A;  3CC7 W;  5GAE a;  1VQ6 W;  3CD6 W;  1R6O C;  1DD4 A;  5GAH a;  4WF9 W;  3W7S A;  1K73 X;  3ZG0 A;  1YIJ W;  3G3P A;  3GQ1 A;  1K8A X;  2QEX W;  3CCE W;  1KC8 X;  3CME W;  1YI2 W;  1YJ9 W;  1Q86 X;  1VQN W;  3O2B A;  2WA8 A;  3G19 A;  3CPW V;  1N8R X;  5DM6 W;  3W7U A;  4WCE W;  1VQP W;  1BXY A;  1VQ7 W;  1VQ8 W;  1QVF V;  2ZJQ W;  3CCJ W;  1VQK W;  4UY8 Z;  1LZW A;  3ZFZ A;  1YJN W;  3G6E W;  1MBX C;  1MG9 A;  1NJI X;  1MBU C;  3OW2 V;  1Q82 X;  1DD3 A;  1VQL W;  5DM7 W;  3CXC V;  3O2H A;  1VQ4 W;  2OTL W;  4IOA W;  5M1A A;  3DNJ A;  1MWR A;  3ZG5 A;  3DLL W;  3G71 W;  3G4S W;  3CMA W;  1CTF A;  1RQU A;  4CJN A;  1K9M X;  3PIP W; 
#chains in the Genus database with same CATH homology
 3PIO W;  1W2B V;  2OTJ W;  4WFA W;  1KQS V;  3CCL W;  4U67 W;  2ZJR W;  1YIT W;  3CCU W;  4IO9 W;  3J7Z Z;  3CCR W;  1KD1 X;  3CCM W;  1VQO W;  4WFN W;  1VQ9 W;  3CCV W;  1YHQ W;  3CC4 W;  1Q81 X;  3CCS W;  3CF5 W;  4IOC W;  5JVG W;  1S72 W;  4WFB W;  3CCQ W;  1JJ2 V;  1QVG V;  1Q7Y X;  2ZJP W;  1M1K X;  5HL7 W;  5JVH W;  1VQ5 W;  1VQM W;  3CC2 W;  3I55 W;  1YJW W;  5GAG a;  3I56 W;  1M90 X;  2QA4 W;  5GAD a;  3CC7 W;  5GAE a;  1VQ6 W;  3CD6 W;  5GAH a;  4WF9 W;  1K73 X;  1YIJ W;  1K8A X;  2QEX W;  3CCE W;  1KC8 X;  3CME W;  1YI2 W;  1YJ9 W;  1Q86 X;  1VQN W;  1N8R X;  3CPW V;  5DM6 W;  4WCE W;  1VQP W;  1BXY A;  1VQ7 W;  1VQ8 W;  1QVF V;  2ZJQ W;  3CCJ W;  1VQK W;  4UY8 Z;  1YJN W;  3G6E W;  1NJI X;  3OW2 V;  1Q82 X;  1VQL W;  5DM7 W;  3CXC V;  1VQ4 W;  2OTL W;  4IOA W;  3DLL W;  3G71 W;  3G4S W;  3CMA W;  1K9M X;  3PIP W;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2ZJRW

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations