3AOP | Genus

Total Genus 156

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	156
sequence length	489
structure length	453
Chain Sequence	LRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILPVHQMLHSVGLDALNDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Oxidoreductase
source organism	Escherichia coli
publication title	Structures of the siroheme- and Fe4S4-containing active center of sulfite reductase in different states of oxidation: heme activation via reduction-gated exogenous ligand exchange. pubmed doi rcsb
molecule keywords	SULFITE REDUCTASE HEMOPROTEIN
total genus	156
structure length	453
sequence length	489
ec nomenclature	ec 1.8.1.2: Assimilatory sulfite reductase (NADPH).
pdb deposition date	1997-07-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01077	NIR_SIR	Nitrite and sulphite reductase 4Fe-4S domain
A	PF03460	NIR_SIR_ferr	Nitrite/Sulfite reductase ferredoxin-like half domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.413.10	Alpha Beta	2-Layer Sandwich	Sulfite Reductase Hemoprotein; domain 1	Sulfite Reductase Hemoprotein, domain 1	3aopA01
3.30.413.10	Alpha Beta	2-Layer Sandwich	Sulfite Reductase Hemoprotein; domain 1	Sulfite Reductase Hemoprotein, domain 1	3aopA03
3.90.480.10	Alpha Beta	Alpha-Beta Complex	Sulfite Reductase Hemoprotein; domain 2	Sulfite Reductase Hemoprotein;Domain 2	3aopA02

4S38A 4AOPA 6GEPA 3MM6B 3MM6A 8GEPA 3B0NA 3B0GA 4S23A 3MM7A 3AOPA 3MMBA 3MM8A 5GEPA 3VKSA 3MM8B 3MMBB 2XSJB 2XSJA 2Y0FA 3MM7B 4S3DA 4G39A 3VM0A 3B0HA 3VLXA 4GEPA 3B0LA 3MM5A 3MMCA 5AOPA 3MMAA 3MMCB 3MM5B 2AOPA 4S3EA 4HTRA 3MMAB 1ZJ9A 4G9PA 3B0JA 3VLYA 4S39A 3OR2B 3OR2A 4S3FA 3VKRA 3VKPA 1AOPA 3VLZA 3GEOA 2AKJA 4G38A 4S3AA 3NOYA 2V4JB 2V4JA 3MM9A 3MM9B 3OR1A 3B0MA 3OR1B 4S3CA 3VKQA 3VKTA 7GEPA 1ZJ8A 4S3BA 3VM1A 2GEPA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4S38 A;  4AOP A;  6GEP A;  3MM6 B;  3MM6 A;  8GEP A;  3B0N A;  3B0G A;  4S23 A;  3MM7 A;  3AOP A;  3MMB A;  3MM8 A;  5GEP A;  3VKS A;  3MM8 B;  3MMB B;  2XSJ B;  2XSJ A;  2Y0F A;  3MM7 B;  4S3D A;  4G39 A;  3VM0 A;  3B0H A;  3VLX A;  4GEP A;  3B0L A;  3MM5 A;  3MMC A;  5AOP A;  3MMA A;  3MMC B;  3MM5 B;  2AOP A;  4S3E A;  4HTR A;  3MMA B;  1ZJ9 A;  4G9P A;  3B0J A;  3VLY A;  4S39 A;  3OR2 B;  3OR2 A;  4S3F A;  3VKR A;  3VKP A;  1AOP A;  3VLZ A;  3GEO A;  2AKJ A;  4G38 A;  4S3A A;  3NOY A;  2V4J B;  2V4J A;  3MM9 A;  3MM9 B;  3OR1 A;  3B0M A;  3OR1 B;  4S3C A;  3VKQ A;  3VKT A;  7GEP A;  1ZJ8 A;  4S3B A;  3VM1 A;  2GEP A; 
#chains in the Genus database with same CATH topology
 4S38 A;  4AOP A;  6GEP A;  3MM6 B;  3MM6 A;  8GEP A;  3B0N A;  3B0G A;  4S23 A;  3MM7 A;  3AOP A;  3MMB A;  3MM8 A;  5GEP A;  3VKS A;  3MM8 B;  3MMB B;  2XSJ B;  2XSJ A;  2Y0F A;  3MM7 B;  4S3D A;  4G39 A;  3VM0 A;  3B0H A;  3VLX A;  4GEP A;  3B0L A;  3MM5 A;  3MMC A;  5AOP A;  3MMA A;  3MMC B;  3MM5 B;  2AOP A;  4S3E A;  4HTR A;  3MMA B;  1ZJ9 A;  4G9P A;  3B0J A;  3VLY A;  4S39 A;  3OR2 B;  3OR2 A;  4S3F A;  3VKR A;  3VKP A;  1AOP A;  3VLZ A;  3GEO A;  2AKJ A;  4G38 A;  4S3A A;  3NOY A;  2V4J B;  2V4J A;  3MM9 A;  3MM9 B;  3OR1 A;  3B0M A;  3OR1 B;  4S3C A;  3VKQ A;  3VKT A;  7GEP A;  1ZJ8 A;  4S3B A;  3VM1 A;  2GEP A; 
#chains in the Genus database with same CATH homology
 4S38 A;  4AOP A;  6GEP A;  3MM6 B;  3MM6 A;  8GEP A;  3B0N A;  3B0G A;  4S23 A;  3MM7 A;  3AOP A;  3MMB A;  3MM8 A;  5GEP A;  3VKS A;  3MM8 B;  3MMB B;  2XSJ B;  2XSJ A;  2Y0F A;  3MM7 B;  4S3D A;  4G39 A;  3VM0 A;  3B0H A;  3VLX A;  4GEP A;  3B0L A;  3MM5 A;  3MMC A;  5AOP A;  3MMA A;  3MMC B;  3MM5 B;  2AOP A;  4S3E A;  4HTR A;  3MMA B;  1ZJ9 A;  4G9P A;  3B0J A;  3VLY A;  4S39 A;  3OR2 B;  3OR2 A;  4S3F A;  3VKR A;  3VKP A;  1AOP A;  3VLZ A;  3GEO A;  2AKJ A;  4G38 A;  4S3A A;  3NOY A;  2V4J B;  2V4J A;  3MM9 A;  3MM9 B;  3OR1 A;  3B0M A;  3OR1 B;  4S3C A;  3VKQ A;  3VKT A;  7GEP A;  1ZJ8 A;  4S3B A;  3VM1 A;  2GEP A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AOPA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations