3BJDA

Crystal structure of putative 3-oxoacyl-(acyl-carrier-protein) synthase from pseudomonas aeruginosa
Total Genus 132
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
326
structure length
321
Chain Sequence
NTRNFSLPQLQNLPIEEARIVADALAVHATSRQIDSAASKLAALAEAGLKGDRQAYAAYQQLLYVLSLSDDVATAQTRRWLARAIYRVEERFMPAADLSRALSEEDFQKRLEQEIAAQERHPMSQYVFSGSASRAQLQVFLRHQWFRTFRLYRDAADLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEADFQAVSTMPEEIAYLNNRARAFRHAEVGWGLAVFYITELVVPGNHEKLYRALLQAGLSEDQAEYYKVHISLVPKREWQLIARRIPDVQFQNAFLTSLSQHFRVERAYYDAIWEEMQSV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of putative 3-oxoacyl-(acyl-carrier-protein) synthase from Pseudomonas aeruginosa.
rcsb
molecule tags Transferase
source organism Pseudomonas aeruginosa pao1
molecule keywords Putative 3-oxoacyl-(acyl-carrier-protein) synthase
total genus 132
structure length 321
sequence length 326
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2007-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14515 HOASN Haem-oxygenase-associated N-terminal helices
A PF14518 Haem_oxygenas_2 Iron-containing redox enzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1240.20 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 Lytic transglycosylase, superhelical linker domain 3bjdA01
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 3bjdA02
1WOXA 3CZYA 3I8RA 1S13A 1TO9B 1XK3A 1ULXA 1J77A 1WZFA 2A2MA 4G7TA 4FN6A 2RGZA 4WWJA 1NI6A 2Q4XA 1J2CA 1UBBA 1UDDA 1YAKA 4G7UA 2Q32A 1QTEA 3MVUA 3OQLA 1RTWA 4GOHA 1WZGA 4G8UA 4WX0A 1OTVA 2QZCA 5BTQA 2QPPA 1TWNA 1J02A 2GM8A 1IX4A 1WZDA 1YAFA 2QCXA 1XK1A 1SLYA 1WOVA 1XK0A 4LQXA 4RAJA 3DDEA 4G7LA 1WWMA 3K4FA 1IRMA 3HLXA 1T5PA 2F2GA 2GM7A 1OTWA 1P3TA 3B5OA 1DVEA 4NY7A 1OZRA 2RD3A 4WD4A 1OZEA 2A2OA 2DY5A 4WMHA 2ZVUA 1V8XA 3TGMA 3B5PA 1OYKA 1XJZA 4G7PA 3RM5A 2E7EA 1N45A 3I9TA 1WNVA 1Z72A 4GPFA 1SK7A 4G98A 1WNXA 3I9UA 2Z68A 3MOOA 1P3UA 1TYHA 4G8PA 4GPCA 3HNHA 3NO6A 1N3UA 4G99A 1DVGA 4GPHA 4MECA 4WWZA 1QSAA 1IX3A 3HMLA 1IW1A 3HOKA 1OYLA 1XK2A 1VGIA 1WNWA 3IBXA 1S8CA 1IW0A 3BJDA 1WE1A 1P3VA 1TO9A 1IVJA 1TWRA 1WOWA 1OZWA 1RCWA 2A6BA 1OZLA 4G8WA
chains in the Genus database with same CATH superfamily
1WOXA 3H20A 1R8JA 5C5EA 3CZYA 3I8RA 1S13A 4G86A 1TO9B 1XK3A 3BULA 1J77A 1ULXA 1WZFA 2A2MA 1SUYA 4G7TA 4FN6A 2RGZA 1UZ3A 4WWJA 1NI6A 2Q4XA 1J2CA 3IVAA 1UBBA 1UDDA 1YAKA 4G7UA 2LCUA 1QTEA 2Q32A 3MVUA 4HH3C 3OQLA 4X8QA 1RTWA 4GOHA 1WZGA 1Q6AA 4G8UA 4WX0A 1OTVA 1K98A 2QZCA 2QPPA 5BTQA 1R5QA 1V2ZA 1J02A 1TWNA 2GM8A 1IX4A 1WZDA 1YAFA 1K7YA 2QCXA 1XK1A 1SLYA 1WOVA 1XK0A 4LQXA 4RAJA 3DDEA 4G7LA 1WWMA 3K4FA 1IRMA 3HLXA 1T5PA 2F2GA 2GM7A 1OTWA 1P3TA 3EZXA 3B5OA 1DVEA 4NY7A 1OZRA 2RD3A 2FMME 1OZEA 2A2OA 2DY5A 3IV9A 4WD4A 2ZVUA 4WMHA 2J70A 1V8XA 3TGMA 3B5PA 3M1MA 1OYKA 1XJZA 4G7PA 2J6YA 3RM5A 2E7EA 1Q6BA 1N45A 4HEHA 3I9TA 1WNVA 1Z72A 4GPFA 1SK7A 4G98A 1WNXA 3I9UA 3WHPA 2Z68A 3MOOA 1W53A 1P3UA 1TYHA 4G8PA 4GPCA 2PBIA 2I2XB 3HNHA 3NO6A 4M0MA 1N3UA 2J6ZA 1DVGA 4G99A 4GPHA 4MECA 1QSAA 4WWZA 1IX3A 3HMLA 1IW1A 3HOKA 1OYLA 1XK2A 1VGIA 1WNWA 1UTUA 3IBXA 1SV1A 1S8CA 1IW0A 4JGIA 3BJDA 1WE1A 1P3VA 1BMTA 1TO9A 1IVJA 1TWRA 1WOWA 1OZWA 3L9TA 1RCWA 2A6BA 5C8DA 1OZLA 4G8WA
chains in the Genus database with same CATH topology
1WOXA 3CZYA 3I8RA 1S13A 1TO9B 1XK3A 1ULXA 1J77A 1WZFA 2A2MA 4G7TA 4FN6A 2RGZA 4WWJA 1NI6A 2Q4XA 1J2CA 1UBBA 1UDDA 1YAKA 4G7UA 2Q32A 1QTEA 3MVUA 3OQLA 1RTWA 4GOHA 1WZGA 4G8UA 4WX0A 1OTVA 2QZCA 5BTQA 2QPPA 1TWNA 1J02A 2GM8A 1IX4A 1WZDA 1YAFA 2QCXA 1XK1A 1SLYA 1WOVA 1XK0A 4LQXA 4RAJA 3DDEA 4G7LA 1WWMA 3K4FA 1IRMA 3HLXA 1T5PA 2F2GA 2GM7A 1OTWA 1P3TA 3B5OA 1DVEA 4NY7A 1OZRA 2RD3A 4WD4A 1OZEA 2A2OA 2DY5A 4WMHA 2ZVUA 1V8XA 3TGMA 3B5PA 1OYKA 1XJZA 4G7PA 3RM5A 2E7EA 1N45A 3I9TA 1WNVA 1Z72A 4GPFA 1SK7A 4G98A 1WNXA 3I9UA 2Z68A 3MOOA 1P3UA 1TYHA 4G8PA 4GPCA 3HNHA 3NO6A 1N3UA 4G99A 1DVGA 4GPHA 4MECA 4WWZA 1QSAA 1IX3A 3HMLA 1IW1A 3HOKA 1OYLA 1XK2A 1VGIA 1WNWA 3IBXA 1S8CA 1IW0A 3BJDA 1WE1A 1P3VA 1TO9A 1IVJA 1TWRA 1WOWA 1OZWA 1RCWA 2A6BA 1OZLA 4G8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WOX A;  3CZY A;  3I8R A;  1S13 A;  1TO9 B;  1XK3 A;  1ULX A;  1J77 A;  1WZF A;  2A2M A;  4G7T A;  4FN6 A;  2RGZ A;  4WWJ A;  1NI6 A;  2Q4X A;  1J2C A;  1UBB A;  1UDD A;  1YAK A;  4G7U A;  2Q32 A;  1QTE A;  3MVU A;  3OQL A;  1RTW A;  4GOH A;  1WZG A;  4G8U A;  4WX0 A;  1OTV A;  2QZC A;  5BTQ A;  2QPP A;  1TWN A;  1J02 A;  2GM8 A;  1IX4 A;  1WZD A;  1YAF A;  2QCX A;  1XK1 A;  1SLY A;  1WOV A;  1XK0 A;  4LQX A;  4RAJ A;  3DDE A;  4G7L A;  1WWM A;  3K4F A;  1IRM A;  3HLX A;  1T5P A;  2F2G A;  2GM7 A;  1OTW A;  1P3T A;  3B5O A;  1DVE A;  4NY7 A;  1OZR A;  2RD3 A;  4WD4 A;  1OZE A;  2A2O A;  2DY5 A;  4WMH A;  2ZVU A;  1V8X A;  3TGM A;  3B5P A;  1OYK A;  1XJZ A;  4G7P A;  3RM5 A;  2E7E A;  1N45 A;  3I9T A;  1WNV A;  1Z72 A;  4GPF A;  1SK7 A;  4G98 A;  1WNX A;  3I9U A;  2Z68 A;  3MOO A;  1P3U A;  1TYH A;  4G8P A;  4GPC A;  3HNH A;  3NO6 A;  1N3U A;  4G99 A;  1DVG A;  4GPH A;  4MEC A;  4WWZ A;  1QSA A;  1IX3 A;  3HML A;  1IW1 A;  3HOK A;  1OYL A;  1XK2 A;  1VGI A;  1WNW A;  3IBX A;  1S8C A;  1IW0 A;  3BJD A;  1WE1 A;  1P3V A;  1TO9 A;  1IVJ A;  1TWR A;  1WOW A;  1OZW A;  1RCW A;  2A6B A;  1OZL A;  4G8W A; 
#chains in the Genus database with same CATH topology
 1WOX A;  3H20 A;  1R8J A;  5C5E A;  3CZY A;  3I8R A;  1S13 A;  4G86 A;  1TO9 B;  1XK3 A;  3BUL A;  1J77 A;  1ULX A;  1WZF A;  2A2M A;  1SUY A;  4G7T A;  4FN6 A;  2RGZ A;  1UZ3 A;  4WWJ A;  1NI6 A;  2Q4X A;  1J2C A;  3IVA A;  1UBB A;  1UDD A;  1YAK A;  4G7U A;  2LCU A;  1QTE A;  2Q32 A;  3MVU A;  4HH3 C;  3OQL A;  4X8Q A;  1RTW A;  4GOH A;  1WZG A;  1Q6A A;  4G8U A;  4WX0 A;  1OTV A;  1K98 A;  2QZC A;  2QPP A;  5BTQ A;  1R5Q A;  1V2Z A;  1J02 A;  1TWN A;  2GM8 A;  1IX4 A;  1WZD A;  1YAF A;  1K7Y A;  2QCX A;  1XK1 A;  1SLY A;  1WOV A;  1XK0 A;  4LQX A;  4RAJ A;  3DDE A;  4G7L A;  1WWM A;  3K4F A;  1IRM A;  3HLX A;  1T5P A;  2F2G A;  2GM7 A;  1OTW A;  1P3T A;  3EZX A;  3B5O A;  1DVE A;  4NY7 A;  1OZR A;  2RD3 A;  2FMM E;  1OZE A;  2A2O A;  2DY5 A;  3IV9 A;  4WD4 A;  2ZVU A;  4WMH A;  2J70 A;  1V8X A;  3TGM A;  3B5P A;  3M1M A;  1OYK A;  1XJZ A;  4G7P A;  2J6Y A;  3RM5 A;  2E7E A;  1Q6B A;  1N45 A;  4HEH A;  3I9T A;  1WNV A;  1Z72 A;  4GPF A;  1SK7 A;  4G98 A;  1WNX A;  3I9U A;  3WHP A;  2Z68 A;  3MOO A;  1W53 A;  1P3U A;  1TYH A;  4G8P A;  4GPC A;  2PBI A;  2I2X B;  3HNH A;  3NO6 A;  4M0M A;  1N3U A;  2J6Z A;  1DVG A;  4G99 A;  4GPH A;  4MEC A;  1QSA A;  4WWZ A;  1IX3 A;  3HML A;  1IW1 A;  3HOK A;  1OYL A;  1XK2 A;  1VGI A;  1WNW A;  1UTU A;  3IBX A;  1SV1 A;  1S8C A;  1IW0 A;  4JGI A;  3BJD A;  1WE1 A;  1P3V A;  1BMT A;  1TO9 A;  1IVJ A;  1TWR A;  1WOW A;  1OZW A;  3L9T A;  1RCW A;  2A6B A;  5C8D A;  1OZL A;  4G8W A; 
#chains in the Genus database with same CATH homology
 1WOX A;  3CZY A;  3I8R A;  1S13 A;  1TO9 B;  1XK3 A;  1ULX A;  1J77 A;  1WZF A;  2A2M A;  4G7T A;  4FN6 A;  2RGZ A;  4WWJ A;  1NI6 A;  2Q4X A;  1J2C A;  1UBB A;  1UDD A;  1YAK A;  4G7U A;  2Q32 A;  1QTE A;  3MVU A;  3OQL A;  1RTW A;  4GOH A;  1WZG A;  4G8U A;  4WX0 A;  1OTV A;  2QZC A;  5BTQ A;  2QPP A;  1TWN A;  1J02 A;  2GM8 A;  1IX4 A;  1WZD A;  1YAF A;  2QCX A;  1XK1 A;  1SLY A;  1WOV A;  1XK0 A;  4LQX A;  4RAJ A;  3DDE A;  4G7L A;  1WWM A;  3K4F A;  1IRM A;  3HLX A;  1T5P A;  2F2G A;  2GM7 A;  1OTW A;  1P3T A;  3B5O A;  1DVE A;  4NY7 A;  1OZR A;  2RD3 A;  4WD4 A;  1OZE A;  2A2O A;  2DY5 A;  4WMH A;  2ZVU A;  1V8X A;  3TGM A;  3B5P A;  1OYK A;  1XJZ A;  4G7P A;  3RM5 A;  2E7E A;  1N45 A;  3I9T A;  1WNV A;  1Z72 A;  4GPF A;  1SK7 A;  4G98 A;  1WNX A;  3I9U A;  2Z68 A;  3MOO A;  1P3U A;  1TYH A;  4G8P A;  4GPC A;  3HNH A;  3NO6 A;  1N3U A;  4G99 A;  1DVG A;  4GPH A;  4MEC A;  4WWZ A;  1QSA A;  1IX3 A;  3HML A;  1IW1 A;  3HOK A;  1OYL A;  1XK2 A;  1VGI A;  1WNW A;  3IBX A;  1S8C A;  1IW0 A;  3BJD A;  1WE1 A;  1P3V A;  1TO9 A;  1IVJ A;  1TWR A;  1WOW A;  1OZW A;  1RCW A;  2A6B A;  1OZL A;  4G8W A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...