3BJDA

Crystal structure of putative 3-oxoacyl-(acyl-carrier-protein) synthase from pseudomonas aeruginosa
Total Genus 132
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
132
sequence length
326
structure length
321
Chain Sequence
NTRNFSLPQLQNLPIEEARIVADALAVHATSRQIDSAASKLAALAEAGLKGDRQAYAAYQQLLYVLSLSDDVATAQTRRWLARAIYRVEERFMPAADLSRALSEEDFQKRLEQEIAAQERHPMSQYVFSGSASRAQLQVFLRHQWFRTFRLYRDAADLLVNLTDVDEAAALARYLYGELGEEDEKGSHPRLLAKLLEAIGLEADFQAVSTMPEEIAYLNNRARAFRHAEVGWGLAVFYITELVVPGNHEKLYRALLQAGLSEDQAEYYKVHISLVPKREWQLIARRIPDVQFQNAFLTSLSQHFRVERAYYDAIWEEMQSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of putative 3-oxoacyl-(acyl-carrier-protein) synthase from Pseudomonas aeruginosa.
rcsb
molecule tags Transferase
source organism Pseudomonas aeruginosa pao1
molecule keywords Putative 3-oxoacyl-(acyl-carrier-protein) synthase
total genus 132
structure length 321
sequence length 326
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2007-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14515 HOASN Haem-oxygenase-associated N-terminal helices
A PF14518 Haem_oxygenas_2 Iron-containing redox enzyme
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1240.20 Mainly Alpha Orthogonal Bundle Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 Lytic transglycosylase, superhelical linker domain 3bjdA01
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 3bjdA02
1OZWA 1IW0A 1OTVA 3TGMA 4G7LA 2A2OA 2GM8A 3RM5A 3I8RA 1IVJA 1XK0A 1DVGA 1XK2A 2RGZA 1IX3A 1XK3A 3MOOA 1SLYA 1DVEA 1RCWA 1OZRA 1VGIA 2Z68A 1P3TA 1T5PA 1QTEA 1WOVA 3MVUA 1P3UA 1QSAA 3HNHA 1NI6A 1ULXA 1WZDA 3B5PA 2ZVUA 4WWZA 4GPHA 3HMLA 1TO9A 1WWMA 2A2MA 1OZEA 3I9TA 4G7TA 1UDDA 4FN6A 3IBXA 1WOXA 1WOWA 4WWJA 1P3VA 4G8WA 2GM7A 1J02A 3K4FA 1TWNA 4MECA 1YAFA 1WNXA 1YAKA 1N3UA 1WZGA 2RD3A 3HOKA 1IRMA 4NY7A 4G8UA 1XK1A 1V8XA 4GPCA 1SK7A 3CZYA 3OQLA 1RTWA 3NO6A 4WMHA 2QPPA 2A6BA 3DDEA 1S13A 1Z72A 1WNWA 1OTWA 1TYHA 1J2CA 1IX4A 3I9UA 1S8CA 4WX0A 2DY5A 2QZCA 3B5OA 2Q32A 1IW1A 1OZLA 1WE1A 4G99A 1WZFA 1TO9B 1WNVA 4RAJA 4WD4A 3HLXA 4GPFA 2QCXA 1OYKA 1N45A 3BJDA 4G7UA 1TWRA 4G98A 4LQXA 5BTQA 2E7EA 2Q4XA 1OYLA 4G7PA 4G8PA 1UBBA 1XJZA 1J77A 2F2GA 4GOHA
chains in the Genus database with same CATH superfamily
1OZWA 1IW0A 1OTVA 3TGMA 4G7LA 1Q6AA 2A2OA 2GM8A 3RM5A 3I8RA 1IVJA 1XK0A 1DVGA 1XK2A 1W53A 2RGZA 1IX3A 1K7YA 1SV1A 1XK3A 3MOOA 1SLYA 1DVEA 1RCWA 1OZRA 1VGIA 5C8DA 3IV9A 2Z68A 1P3TA 1T5PA 1QTEA 1UZ3A 1WOVA 3MVUA 3BULA 3IVAA 1P3UA 1QSAA 5C5EA 3HNHA 1NI6A 2J6YA 1ULXA 1WZDA 2ZVUA 3B5PA 4GPHA 4WWZA 1K98A 3HMLA 1TO9A 1WWMA 2A2MA 1OZEA 3I9TA 4M0MA 4G7TA 1UDDA 1BMTA 4FN6A 3IBXA 1WOXA 1SUYA 1WOWA 4WWJA 1P3VA 4G8WA 2GM7A 1UTUA 4X8QA 1J02A 4HH3C 3K4FA 1TWNA 1Q6BA 4MECA 1YAFA 2J70A 2FMME 1WNXA 1YAKA 1N3UA 1WZGA 2RD3A 3HOKA 1IRMA 4NY7A 4G8UA 1XK1A 1V8XA 4GPCA 1SK7A 3CZYA 3OQLA 2LCUA 2PBIA 1RTWA 3NO6A 4WMHA 2QPPA 2A6BA 3DDEA 1S13A 3L9TA 3H20A 1Z72A 1WNWA 1OTWA 1TYHA 3EZXA 1V2ZA 1J2CA 1IX4A 3I9UA 2I2XB 1S8CA 4WX0A 2DY5A 2QZCA 3B5OA 2Q32A 1IW1A 1OZLA 1WE1A 4G99A 3M1MA 1WZFA 1TO9B 1WNVA 4RAJA 4WD4A 3HLXA 4GPFA 2QCXA 1OYKA 3BJDA 1N45A 4G7UA 1R8JA 4HEHA 3WHPA 1TWRA 4G98A 4LQXA 5BTQA 2J6ZA 2E7EA 2Q4XA 1R5QA 1OYLA 4G7PA 4G8PA 1UBBA 1XJZA 1J77A 2F2GA 4JGIA 4G86A 4GOHA
chains in the Genus database with same CATH topology
1OZWA 1IW0A 1OTVA 3TGMA 4G7LA 2A2OA 2GM8A 3RM5A 3I8RA 1IVJA 1XK0A 1DVGA 1XK2A 2RGZA 1IX3A 1XK3A 3MOOA 1SLYA 1DVEA 1RCWA 1OZRA 1VGIA 2Z68A 1P3TA 1T5PA 1QTEA 1WOVA 3MVUA 1P3UA 1QSAA 3HNHA 1NI6A 1ULXA 1WZDA 3B5PA 2ZVUA 4WWZA 4GPHA 3HMLA 1TO9A 1WWMA 2A2MA 1OZEA 3I9TA 4G7TA 1UDDA 4FN6A 3IBXA 1WOXA 1WOWA 4WWJA 1P3VA 4G8WA 2GM7A 1J02A 3K4FA 1TWNA 4MECA 1YAFA 1WNXA 1YAKA 1N3UA 1WZGA 2RD3A 3HOKA 1IRMA 4NY7A 4G8UA 1XK1A 1V8XA 4GPCA 1SK7A 3CZYA 3OQLA 1RTWA 3NO6A 4WMHA 2QPPA 2A6BA 3DDEA 1S13A 1Z72A 1WNWA 1OTWA 1TYHA 1J2CA 1IX4A 3I9UA 1S8CA 4WX0A 2DY5A 2QZCA 3B5OA 2Q32A 1IW1A 1OZLA 1WE1A 4G99A 1WZFA 1TO9B 1WNVA 4RAJA 4WD4A 3HLXA 4GPFA 2QCXA 1OYKA 1N45A 3BJDA 4G7UA 1TWRA 4G98A 4LQXA 5BTQA 2E7EA 2Q4XA 1OYLA 4G7PA 4G8PA 1UBBA 1XJZA 1J77A 2F2GA 4GOHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OZW A;  1IW0 A;  1OTV A;  3TGM A;  4G7L A;  2A2O A;  2GM8 A;  3RM5 A;  3I8R A;  1IVJ A;  1XK0 A;  1DVG A;  1XK2 A;  2RGZ A;  1IX3 A;  1XK3 A;  3MOO A;  1SLY A;  1DVE A;  1RCW A;  1OZR A;  1VGI A;  2Z68 A;  1P3T A;  1T5P A;  1QTE A;  1WOV A;  3MVU A;  1P3U A;  1QSA A;  3HNH A;  1NI6 A;  1ULX A;  1WZD A;  3B5P A;  2ZVU A;  4WWZ A;  4GPH A;  3HML A;  1TO9 A;  1WWM A;  2A2M A;  1OZE A;  3I9T A;  4G7T A;  1UDD A;  4FN6 A;  3IBX A;  1WOX A;  1WOW A;  4WWJ A;  1P3V A;  4G8W A;  2GM7 A;  1J02 A;  3K4F A;  1TWN A;  4MEC A;  1YAF A;  1WNX A;  1YAK A;  1N3U A;  1WZG A;  2RD3 A;  3HOK A;  1IRM A;  4NY7 A;  4G8U A;  1XK1 A;  1V8X A;  4GPC A;  1SK7 A;  3CZY A;  3OQL A;  1RTW A;  3NO6 A;  4WMH A;  2QPP A;  2A6B A;  3DDE A;  1S13 A;  1Z72 A;  1WNW A;  1OTW A;  1TYH A;  1J2C A;  1IX4 A;  3I9U A;  1S8C A;  4WX0 A;  2DY5 A;  2QZC A;  3B5O A;  2Q32 A;  1IW1 A;  1OZL A;  1WE1 A;  4G99 A;  1WZF A;  1TO9 B;  1WNV A;  4RAJ A;  4WD4 A;  3HLX A;  4GPF A;  2QCX A;  1OYK A;  1N45 A;  3BJD A;  4G7U A;  1TWR A;  4G98 A;  4LQX A;  5BTQ A;  2E7E A;  2Q4X A;  1OYL A;  4G7P A;  4G8P A;  1UBB A;  1XJZ A;  1J77 A;  2F2G A;  4GOH A; 
#chains in the Genus database with same CATH topology
 1OZW A;  1IW0 A;  1OTV A;  3TGM A;  4G7L A;  1Q6A A;  2A2O A;  2GM8 A;  3RM5 A;  3I8R A;  1IVJ A;  1XK0 A;  1DVG A;  1XK2 A;  1W53 A;  2RGZ A;  1IX3 A;  1K7Y A;  1SV1 A;  1XK3 A;  3MOO A;  1SLY A;  1DVE A;  1RCW A;  1OZR A;  1VGI A;  5C8D A;  3IV9 A;  2Z68 A;  1P3T A;  1T5P A;  1QTE A;  1UZ3 A;  1WOV A;  3MVU A;  3BUL A;  3IVA A;  1P3U A;  1QSA A;  5C5E A;  3HNH A;  1NI6 A;  2J6Y A;  1ULX A;  1WZD A;  2ZVU A;  3B5P A;  4GPH A;  4WWZ A;  1K98 A;  3HML A;  1TO9 A;  1WWM A;  2A2M A;  1OZE A;  3I9T A;  4M0M A;  4G7T A;  1UDD A;  1BMT A;  4FN6 A;  3IBX A;  1WOX A;  1SUY A;  1WOW A;  4WWJ A;  1P3V A;  4G8W A;  2GM7 A;  1UTU A;  4X8Q A;  1J02 A;  4HH3 C;  3K4F A;  1TWN A;  1Q6B A;  4MEC A;  1YAF A;  2J70 A;  2FMM E;  1WNX A;  1YAK A;  1N3U A;  1WZG A;  2RD3 A;  3HOK A;  1IRM A;  4NY7 A;  4G8U A;  1XK1 A;  1V8X A;  4GPC A;  1SK7 A;  3CZY A;  3OQL A;  2LCU A;  2PBI A;  1RTW A;  3NO6 A;  4WMH A;  2QPP A;  2A6B A;  3DDE A;  1S13 A;  3L9T A;  3H20 A;  1Z72 A;  1WNW A;  1OTW A;  1TYH A;  3EZX A;  1V2Z A;  1J2C A;  1IX4 A;  3I9U A;  2I2X B;  1S8C A;  4WX0 A;  2DY5 A;  2QZC A;  3B5O A;  2Q32 A;  1IW1 A;  1OZL A;  1WE1 A;  4G99 A;  3M1M A;  1WZF A;  1TO9 B;  1WNV A;  4RAJ A;  4WD4 A;  3HLX A;  4GPF A;  2QCX A;  1OYK A;  3BJD A;  1N45 A;  4G7U A;  1R8J A;  4HEH A;  3WHP A;  1TWR A;  4G98 A;  4LQX A;  5BTQ A;  2J6Z A;  2E7E A;  2Q4X A;  1R5Q A;  1OYL A;  4G7P A;  4G8P A;  1UBB A;  1XJZ A;  1J77 A;  2F2G A;  4JGI A;  4G86 A;  4GOH A; 
#chains in the Genus database with same CATH homology
 1OZW A;  1IW0 A;  1OTV A;  3TGM A;  4G7L A;  2A2O A;  2GM8 A;  3RM5 A;  3I8R A;  1IVJ A;  1XK0 A;  1DVG A;  1XK2 A;  2RGZ A;  1IX3 A;  1XK3 A;  3MOO A;  1SLY A;  1DVE A;  1RCW A;  1OZR A;  1VGI A;  2Z68 A;  1P3T A;  1T5P A;  1QTE A;  1WOV A;  3MVU A;  1P3U A;  1QSA A;  3HNH A;  1NI6 A;  1ULX A;  1WZD A;  3B5P A;  2ZVU A;  4WWZ A;  4GPH A;  3HML A;  1TO9 A;  1WWM A;  2A2M A;  1OZE A;  3I9T A;  4G7T A;  1UDD A;  4FN6 A;  3IBX A;  1WOX A;  1WOW A;  4WWJ A;  1P3V A;  4G8W A;  2GM7 A;  1J02 A;  3K4F A;  1TWN A;  4MEC A;  1YAF A;  1WNX A;  1YAK A;  1N3U A;  1WZG A;  2RD3 A;  3HOK A;  1IRM A;  4NY7 A;  4G8U A;  1XK1 A;  1V8X A;  4GPC A;  1SK7 A;  3CZY A;  3OQL A;  1RTW A;  3NO6 A;  4WMH A;  2QPP A;  2A6B A;  3DDE A;  1S13 A;  1Z72 A;  1WNW A;  1OTW A;  1TYH A;  1J2C A;  1IX4 A;  3I9U A;  1S8C A;  4WX0 A;  2DY5 A;  2QZC A;  3B5O A;  2Q32 A;  1IW1 A;  1OZL A;  1WE1 A;  4G99 A;  1WZF A;  1TO9 B;  1WNV A;  4RAJ A;  4WD4 A;  3HLX A;  4GPF A;  2QCX A;  1OYK A;  1N45 A;  3BJD A;  4G7U A;  1TWR A;  4G98 A;  4LQX A;  5BTQ A;  2E7E A;  2Q4X A;  1OYL A;  4G7P A;  4G8P A;  1UBB A;  1XJZ A;  1J77 A;  2F2G A;  4GOH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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