3DNJA

The structure of the caulobacter crescentus clps protease adaptor protein in complex with a n-end rule peptide
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
80
structure length
80
Chain Sequence
LYRVLILNDDYTPMEFVVYVLERFFNKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQCTMEKD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The molecular basis of N-end rule recognition.
pubmed doi rcsb
molecule tags Peptide binding protein
source organism Caulobacter vibrioides
molecule keywords ATP-dependent Clp protease adapter protein clpS
total genus 24
structure length 80
sequence length 80
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02617 ClpS ATP-dependent Clp protease adaptor protein ClpS
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1390.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30; Chain: A, Ribosomal Protein L30; Chain: A, 3dnjA00
1R6QC 2WA9A 1RQVA 3DNJA 3O2BA 1DD3A 1R6OC 3O2HA 1MBUC 3G19A 3GQ1A 3G1BA 3O1FA 4YJXA 4YKAA 1LZWA 3G3PA 1DD4A 1MBVB 1RQSA 4YJMA 1MG9A 3GQ0A 1CTFA 2W9RA 1RQUA 3O1FB 1MBXC 2WA8A 3O2OA 3GW1A
chains in the Genus database with same CATH superfamily
3G4SW 1MWTA 1Q86X 2WA9A 1Q81X 3DNJA 4CPKA 1N8RX 3O2HA 1YI2W 3W7TA 3W7UA 3G1BA 4YJXA 3ZG0A 2OTLW 1YJWW 5GAHa 3CCRW 3I55W 1QVGV 3GQ0A 4DKIA 1CTFA 1VQ6W 1Q82X 3G71W 3W7XA 1MWRA 4IO9W 3O2OA 3GW1A 5GAEa 1VQ8W 1VQ9W 1RQVA 1VQLW 1VQ5W 3PIPW 3O2BA 4WFAW 1S72W 5GW7A 4BL3A 5CA3A 4BL2A 1MBUC 4WFNW 3I56W 1YJNW 3CCMW 5JVGW 4WCEW 1VQMW 4WFBW 4CJNA 3G6EW 2QA4W 5M19A 3W7SA 1DD4A 1RQSA 4YJMA 3CCUW 3CCQW 2WA8A 4U67W 1MWUA 1M1KX 4IOAW 1YHQW 1YJ9W 1VQQA 3CMAW 3CC4W 3W7WA 1Q7YX 1R6OC 2ZJRW 2QEXW 1M90X 5GADa 1YITW 3PIOW 3G19A 4IOCW 3GQ1A 3CC7W 3CCVW 2OTJW 3CC2W 5DM7W 3O1FA 3J7ZZ 5DM6W 1BXYA 1K73X 3G3PA 3CMEW 1MBVB 1NJIX 2ZJQW 1KD1X 1VQ4W 1VQNW 3CF5W 2W9RA 3CCLW 1MBXC 3CXCV 1W2BV 1K9MX 3CCEW 5M18A 1R6QC 3CD6W 1K8AX 1QVFV 3DLLW 3ZFZA 5HL7W 1DD3A 1YIJW 3CCSW 1VQ7W 3CPWV 1VQPW 1VQOW 1KC8X 5M1AA 4YKAA 3CCJW 1LZWA 3OW2V 2ZJPW 3D3IA 1MWSA 4UY8Z 1MG9A 5GAGa 4WF9W 1VQKW 5JVHW 1JJ2V 1RQUA 3O1FB 1KQSV 3ZG5A
chains in the Genus database with same CATH topology
1R6QC 2WA9A 1RQVA 3DNJA 3O2BA 1DD3A 1R6OC 3O2HA 1MBUC 3G19A 3GQ1A 3G1BA 3O1FA 4YJXA 4YKAA 1LZWA 3G3PA 1DD4A 1MBVB 1RQSA 4YJMA 1MG9A 3GQ0A 1CTFA 2W9RA 1RQUA 3O1FB 1MBXC 2WA8A 3O2OA 3GW1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R6Q C;  2WA9 A;  1RQV A;  3DNJ A;  3O2B A;  1DD3 A;  1R6O C;  3O2H A;  1MBU C;  3G19 A;  3GQ1 A;  3G1B A;  3O1F A;  4YJX A;  4YKA A;  1LZW A;  3G3P A;  1DD4 A;  1MBV B;  1RQS A;  4YJM A;  1MG9 A;  3GQ0 A;  1CTF A;  2W9R A;  1RQU A;  3O1F B;  1MBX C;  2WA8 A;  3O2O A;  3GW1 A; 
#chains in the Genus database with same CATH topology
 3G4S W;  1MWT A;  1Q86 X;  2WA9 A;  1Q81 X;  3DNJ A;  4CPK A;  1N8R X;  3O2H A;  1YI2 W;  3W7T A;  3W7U A;  3G1B A;  4YJX A;  3ZG0 A;  2OTL W;  1YJW W;  5GAH a;  3CCR W;  3I55 W;  1QVG V;  3GQ0 A;  4DKI A;  1CTF A;  1VQ6 W;  1Q82 X;  3G71 W;  3W7X A;  1MWR A;  4IO9 W;  3O2O A;  3GW1 A;  5GAE a;  1VQ8 W;  1VQ9 W;  1RQV A;  1VQL W;  1VQ5 W;  3PIP W;  3O2B A;  4WFA W;  1S72 W;  5GW7 A;  4BL3 A;  5CA3 A;  4BL2 A;  1MBU C;  4WFN W;  3I56 W;  1YJN W;  3CCM W;  5JVG W;  4WCE W;  1VQM W;  4WFB W;  4CJN A;  3G6E W;  2QA4 W;  5M19 A;  3W7S A;  1DD4 A;  1RQS A;  4YJM A;  3CCU W;  3CCQ W;  2WA8 A;  4U67 W;  1MWU A;  1M1K X;  4IOA W;  1YHQ W;  1YJ9 W;  1VQQ A;  3CMA W;  3CC4 W;  3W7W A;  1Q7Y X;  1R6O C;  2ZJR W;  2QEX W;  1M90 X;  5GAD a;  1YIT W;  3PIO W;  3G19 A;  4IOC W;  3GQ1 A;  3CC7 W;  3CCV W;  2OTJ W;  3CC2 W;  5DM7 W;  3O1F A;  3J7Z Z;  5DM6 W;  1BXY A;  1K73 X;  3G3P A;  3CME W;  1MBV B;  1NJI X;  2ZJQ W;  1KD1 X;  1VQ4 W;  1VQN W;  3CF5 W;  2W9R A;  3CCL W;  1MBX C;  3CXC V;  1W2B V;  1K9M X;  3CCE W;  5M18 A;  1R6Q C;  3CD6 W;  1K8A X;  1QVF V;  3DLL W;  3ZFZ A;  5HL7 W;  1DD3 A;  1YIJ W;  3CCS W;  1VQ7 W;  3CPW V;  1VQP W;  1VQO W;  1KC8 X;  5M1A A;  4YKA A;  3CCJ W;  1LZW A;  3OW2 V;  2ZJP W;  3D3I A;  1MWS A;  4UY8 Z;  1MG9 A;  5GAG a;  4WF9 W;  1VQK W;  5JVH W;  1JJ2 V;  1RQU A;  3O1F B;  1KQS V;  3ZG5 A; 
#chains in the Genus database with same CATH homology
 1R6Q C;  2WA9 A;  1RQV A;  3DNJ A;  3O2B A;  1DD3 A;  1R6O C;  3O2H A;  1MBU C;  3G19 A;  3GQ1 A;  3G1B A;  3O1F A;  4YJX A;  4YKA A;  1LZW A;  3G3P A;  1DD4 A;  1MBV B;  1RQS A;  4YJM A;  1MG9 A;  3GQ0 A;  1CTF A;  2W9R A;  1RQU A;  3O1F B;  1MBX C;  2WA8 A;  3O2O A;  3GW1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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